CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - PDB - MCFold



2K5Z_A (ext) [ FASTA input ] GGUCUACAUUGCUGUUGUCGUGUGUGACC
[ reference std structure ] (((((((((.((....)).))))).))))
[ reference ext structure ] (((((((((.((....)).))))).))))
[ predicted structure ] ((((((((((((....)))))))).))))
2K5Z_A [ FASTA input ] GGUCUACAUUGCUGUUGUCGUGUGUGACC
[ reference std structure ] (((((((((.((....)).))))).))))
[ reference ext structure ] (((((((((.((....)).))))).))))
[ predicted structure ] (((((((((.((....)).))))).))))
2K63_A [ FASTA input ] GGAGUAUGUAUUGGCACUGAGCAUACUCC
[ reference std structure ] (((((((((...........)))))))))
[ reference ext structure ] ((((((((((.........))))))))))
[ predicted structure ] (((((((((.((((..)))))))))))))
2K63_A (ext) [ FASTA input ] GGAGUAUGUAUUGGCACUGAGCAUACUCC
[ reference std structure ] (((((((((...........)))))))))
[ reference ext structure ] ((((((((((.........))))))))))
[ predicted structure ] (((((((((.((((..)))))))))))))
2K66_A [ FASTA input ] GGAGUAUGUGAAAGCAUACUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] ((((((((((..))))))))))
[ predicted structure ] (((((((((....)))))))))
2K66_A (ext) [ FASTA input ] GGAGUAUGUGAAAGCAUACUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] ((((((((((..))))))))))
[ predicted structure ] ((((((((((..))))))))))
2KD8_A [ FASTA input ] GGAUGGUUGGGGUUAGCCAUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] (((((((((....)))))))))
[ predicted structure ] ((((((((((..))))))))))
2KD8_A (ext) [ FASTA input ] GGAUGGUUGGGGUUAGCCAUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] (((((((((....)))))))))
[ predicted structure ] ((((((((((..))))))))))
2KDQ_B [ FASTA input ] GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
[ reference std structure ] ((((((...((((......))))))))))
[ reference ext structure ] (((((([..(]((......)).)))))))
          (          )       
[ predicted structure ] ((((((...(((((...).))))))))))
2KDQ_B (ext) [ FASTA input ] GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
[ reference std structure ] ((((((...((((......))))))))))
[ reference ext structure ] (((((([..(]((......)).)))))))
          (          )       
[ predicted structure ] ((((((...(((((...).))))))))))
2KE6_A [ FASTA input ] GGCUUGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUUAAGCC
[ reference std structure ] (((((.(((((((((((((........))))))).))).))).)))))
[ reference ext structure ] (((((.(((((((((((((.(....).))))))).))).))).)))))
[ predicted structure ] (((((((((((((((((((........))))))).))).)))))))))
2KE6_A (ext) [ FASTA input ] GGCUUGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUUAAGCC
[ reference std structure ] (((((.(((((((((((((........))))))).))).))).)))))
[ reference ext structure ] (((((.(((((((((((((.(....).))))))).))).))).)))))
[ predicted structure ] (((((((((((((((((((((....))))))))).))).)))))))))
2KEZ_A (ext) [ FASTA input ] GGUUCCCCUGCAUAAGGAUGAACC
[ reference std structure ] (((((.(((.....)))..)))))
[ reference ext structure ] ((((((((((...)))).))))))
[ predicted structure ] ((((((((((...))))).)))))
2KEZ_A [ FASTA input ] GGUUCCCCUGCAUAAGGAUGAACC
[ reference std structure ] (((((.(((.....)))..)))))
[ reference ext structure ] ((((((((((...)))).))))))
[ predicted structure ] (((((.(((.....)))..)))))
2KFC_A [ FASTA input ] GGAGAGGUUCUAGUUAUACCCUCUAUAAAAAACUAA
[ reference std structure ] ..(((((...[[[......)))))........]].]
[ reference ext structure ] ..({a((.(.<<(.....)))(})..A)...).>.>
            (                   )   
                   (          )     
                    (       )       
               (                 )  
                       ()           
      (                      )      
    (                )              
                      (   )         
            (    )                  
      ( )                           
[ predicted structure ] ..(((((.(.((..)).).))))).((......)).
2KFC_A (ext) [ FASTA input ] GGAGAGGUUCUAGUUAUACCCUCUAUAAAAAACUAA
[ reference std structure ] ..(((((...[[[......)))))........]].]
[ reference ext structure ] ..({a((.(.<<(.....)))(})..A)...).>.>
            (                   )   
                   (          )     
                    (       )       
               (                 )  
                       ()           
      (                      )      
    (                )              
                      (   )         
            (    )                  
      ( )                           
[ predicted structure ] .(((((((((((..)))))))))))(((....))).
2KGP_A [ FASTA input ] GGCAGUGUGAGUACCUUCACACGUC
[ reference std structure ] (((.((((((......)))))))))
[ reference ext structure ] (((.((((((......)))))))))
[ predicted structure ] (((.(((((((....))))))))))
2KGP_A (ext) [ FASTA input ] GGCAGUGUGAGUACCUUCACACGUC
[ reference std structure ] (((.((((((......)))))))))
[ reference ext structure ] (((.((((((......)))))))))
[ predicted structure ] (((.(((((((....))))))))))
2KMJ_A [ FASTA input ] GGCCAGAUUGAGCUUCGGCUCUCUGGUC
[ reference std structure ] (((((((..((((....)))))))))))
[ reference ext structure ] (((((((..((((....)))))))))))
[ predicted structure ] (((((((..(((((..))))))))))))
2KMJ_A (ext) [ FASTA input ] GGCCAGAUUGAGCUUCGGCUCUCUGGUC
[ reference std structure ] (((((((..((((....)))))))))))
[ reference ext structure ] (((((((..((((....)))))))))))
[ predicted structure ] (((((((..(((((..))))))))))))
2KPV_A [ FASTA input ] GGAGGUAGUAGGUCGAAAGACCGUUCUACACUCC
[ reference std structure ] ((((((((.(((((....)))).).)))).))))
[ reference ext structure ] ((((((((.(((((....)))).).)))).))))
[ predicted structure ] ((((((((.(((((....)))).).)))).))))
2KPV_A (ext) [ FASTA input ] GGAGGUAGUAGGUCGAAAGACCGUUCUACACUCC
[ reference std structure ] ((((((((.(((((....)))).).)))).))))
[ reference ext structure ] ((((((((.(((((....)))).).)))).))))
[ predicted structure ] (((((((((((((((..))))).)))))).))))
2KU0_A (ext) [ FASTA input ] GGAGGAACUACUGUCUUCCUUCGGGUCGUGCAGCCUCC
[ reference std structure ] (((((.....(((((..((....))..).)))))))))
[ reference ext structure ] ((((((..).((((((((((..)))))).)))))))))
[ predicted structure ] (((((.....((((((((((..)))))).)))))))))
2KU0_A [ FASTA input ] GGAGGAACUACUGUCUUCCUUCGGGUCGUGCAGCCUCC
[ reference std structure ] (((((.....(((((..((....))..).)))))))))
[ reference ext structure ] ((((((..).((((((((((..)))))).)))))))))
[ predicted structure ] (((((.....(((((..(((..)))..).)))))))))
2KUR_A [ FASTA input ] GGCUUGAUUGUAUUAUUAAAUUAAUUCUUAAUAACUACAAAUUAAGCC
[ reference std structure ] (((((((((((((((((((........))))))).))).)))))))))
[ reference ext structure ] (((((((((((((((((((((....))))))))).))).)))))))))
[ predicted structure ] (((((((((((((((((((........))))))).))).)))))))))
2KUR_A (ext) [ FASTA input ] GGCUUGAUUGUAUUAUUAAAUUAAUUCUUAAUAACUACAAAUUAAGCC
[ reference std structure ] (((((((((((((((((((........))))))).))).)))))))))
[ reference ext structure ] (((((((((((((((((((((....))))))))).))).)))))))))
[ predicted structure ] (((((((((((((((((((((....))))))))).))).)))))))))
2KUU_A [ FASTA input ] GGCUUGAUUGUAUGUGUAAAUUAAUUCUUACACACUACAAAUUAAGCC
[ reference std structure ] (((((.(((((((((((((........))))))).))).))).)))))
[ reference ext structure ] (((((.(((((((((((((((....))))))))).))).))).)))))
                    (     )                     
[ predicted structure ] (((((((((((((((((((........))))))).))).)))))))))
2KUU_A (ext) [ FASTA input ] GGCUUGAUUGUAUGUGUAAAUUAAUUCUUACACACUACAAAUUAAGCC
[ reference std structure ] (((((.(((((((((((((........))))))).))).))).)))))
[ reference ext structure ] (((((.(((((((((((((((....))))))))).))).))).)))))
                    (     )                     
[ predicted structure ] (((((((((((((((((((((....))))))))).))).)))))))))
2KUV_A [ FASTA input ] GGCUCGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUCGAGCC
[ reference std structure ] (((((((((((((((((((........))))))).))).)))))))))
[ reference ext structure ] (((((((((((((((((((((....))))))))).))).)))))))))
                    (     )                     
[ predicted structure ] (((((((((((((((((((........))))))).))).)))))))))
2KUV_A (ext) [ FASTA input ] GGCUCGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUCGAGCC
[ reference std structure ] (((((((((((((((((((........))))))).))).)))))))))
[ reference ext structure ] (((((((((((((((((((((....))))))))).))).)))))))))
                    (     )                     
[ predicted structure ] (((((((((((((((((((((....))))))))).))).)))))))))
2KUW_A [ FASTA input ] GGGGUUGGUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAUCAGCUCC
[ reference std structure ] (((((((((((.(((((((........)))))))..)).)))))))))
[ reference ext structure ] (((((((((((((((((((.(....).))))))).))).)))))))))
                    (     )                     
[ predicted structure ] (((((((((((((((((((........))))))).))).)))))))))
2KUW_A (ext) [ FASTA input ] GGGGUUGGUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAUCAGCUCC
[ reference std structure ] (((((((((((.(((((((........)))))))..)).)))))))))
[ reference ext structure ] (((((((((((((((((((.(....).))))))).))).)))))))))
                    (     )                     
[ predicted structure ] (((((((((((((((((((((....))))))))).))).)))))))))
2KX8_A (ext) [ FASTA input ] GGGAAAUGAGGCGCUGCAUGUGGCAGUCUGCCUUUCUUUCCC
[ reference std structure ] ((((((.((((((((((.....)))))..)))))..))))))
[ reference ext structure ] (((((((((((((((((.....)))))..))))).)))))))
         (                 )              
[ predicted structure ] ((((((((((((((((((...))))))..)))))).))))))
2KX8_A [ FASTA input ] GGGAAAUGAGGCGCUGCAUGUGGCAGUCUGCCUUUCUUUCCC
[ reference std structure ] ((((((.((((((((((.....)))))..)))))..))))))
[ reference ext structure ] (((((((((((((((((.....)))))..))))).)))))))
         (                 )              
[ predicted structure ] ((((((.((((((((((.....)))))..)))))..))))))
2KXM_A [ FASTA input ] GGCUGCUUGUCCUUUAAUGGUCCAGUC
[ reference std structure ] (((((...(.((......)).))))))
[ reference ext structure ] (((((...(((((....))))))))))
[ predicted structure ] (((((...(.((.(..).)).))))))
2KXM_A (ext) [ FASTA input ] GGCUGCUUGUCCUUUAAUGGUCCAGUC
[ reference std structure ] (((((...(.((......)).))))))
[ reference ext structure ] (((((...(((((....))))))))))
[ predicted structure ] (((((...((((((..)))))))))))
2KZL_A [ FASTA input ] GGGAGUAAAGAUUGAGACAAGUAGGACUUCGGUCCGAAUACACUCAUGAACUCCC
[ reference std structure ] .(((((......((((.......((((....)))).......))))...))))).
[ reference ext structure ] ((((((...((.((((...(.((((((....)))))))....)))).))))))))
[ predicted structure ] ((((((..(...((((...(.(.(((((..))))).).)...)))))..))))))
2KZL_A (ext) [ FASTA input ] GGGAGUAAAGAUUGAGACAAGUAGGACUUCGGUCCGAAUACACUCAUGAACUCCC
[ reference std structure ] .(((((......((((.......((((....)))).......))))...))))).
[ reference ext structure ] ((((((...((.((((...(.((((((....)))))))....)))).))))))))
[ predicted structure ] (((((((((...((((((((((((((((..)))))))))))))))))))))))))
2L1F_B [ FASTA input ] GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGGG
[ reference std structure ] .((((..(((.(((((((((....)))))....)))))))))))..((((((((....))))))))
[ reference ext structure ] .((((.()((.(((((((((....)))))....)))))).))))..((((((((....))))))))
       (                               )                          
[ predicted structure ] .((((..(((.((((...(.(((..))).)...)))))))))))..((((((((....))))))))
2L1F_A (ext) [ FASTA input ] GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGG
[ reference std structure ] .((((..(((.(((((((((....)))))....)))))))))))...(((((((....)))))))
[ reference ext structure ] .((((.()((.(((((((((....)))))....)))))).))))...(((((((....)))))))
       (                               )                         
[ predicted structure ] (((((..(((.((((((((((((..))))))))))))))))))))..(((((((....)))))))
2L1F_A [ FASTA input ] GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGG
[ reference std structure ] .((((..(((.(((((((((....)))))....)))))))))))...(((((((....)))))))
[ reference ext structure ] .((((.()((.(((((((((....)))))....)))))).))))...(((((((....)))))))
       (                               )                         
[ predicted structure ] .((((..(((.((((...(.(((..))).)...)))))))))))...(((((((....)))))))
2L1F_B (ext) [ FASTA input ] GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGGG
[ reference std structure ] .((((..(((.(((((((((....)))))....)))))))))))..((((((((....))))))))
[ reference ext structure ] .((((.()((.(((((((((....)))))....)))))).))))..((((((((....))))))))
       (                               )                          
[ predicted structure ] (((((..(((.((((((((((((..)))))))))))))))))))).((((((((....))))))))
2L2K_A (ext) [ FASTA input ] GGUAAGGUGGGUGGAAUCCUUCGGGAUCCCACCUACCCUGCC
[ reference std structure ] ((((.(((((((((.((((....)))).))))))))).))))
[ reference ext structure ] ((((((((((((((.(((((..))))).))))))))))))))
[ predicted structure ] ((((((((((((((((((((..))))))))))))))))))))
2L2K_A [ FASTA input ] GGUAAGGUGGGUGGAAUCCUUCGGGAUCCCACCUACCCUGCC
[ reference std structure ] ((((.(((((((((.((((....)))).))))))))).))))
[ reference ext structure ] ((((((((((((((.(((((..))))).))))))))))))))
[ predicted structure ] ((((.(((((((((.(((((..))))).))))))))).))))
2L3C_B (ext) [ FASTA input ] GGUAGUAUAACAAUAUCCGUGUUGUUAUAGUACC
[ reference std structure ] ((((.((((((((((....)))))))))).))))
[ reference ext structure ] ((((((((((((((((..))))))))))))))))
               (   )              
[ predicted structure ] ((((((((((((((((..))))))))))))))))
2L3C_B [ FASTA input ] GGUAGUAUAACAAUAUCCGUGUUGUUAUAGUACC
[ reference std structure ] ((((.((((((((((....)))))))))).))))
[ reference ext structure ] ((((((((((((((((..))))))))))))))))
               (   )              
[ predicted structure ] ((((.(((((((((((..))))))))))).))))
2L3E_A (ext) [ FASTA input ] GGCUUUUGCUCCCCGUGCUUCGGCACGGAAAAGCC
[ reference std structure ] (((((((......(((((....))))).)))))))
[ reference ext structure ] (((((((......((((((..)))))).)))))))
[ predicted structure ] (((((((.....(((((((..))))))))))))))
2L3E_A [ FASTA input ] GGCUUUUGCUCCCCGUGCUUCGGCACGGAAAAGCC
[ reference std structure ] (((((((......(((((....))))).)))))))
[ reference ext structure ] (((((((......((((((..)))))).)))))))
[ predicted structure ] (((((((.....(((((((..))))))))))))))
2L3J_B [ FASTA input ] GGCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGCUAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGCC
[ reference std structure ] (((((((.(((((((((.(((.(((((((((((.....))))))))))).))).))))))))).)))))))
[ reference ext structure ] ((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))
[ predicted structure ] (((((((.(((((((((.(((.(((((((((((.....))))))))))).))).))))))))).)))))))
2L3J_B (ext) [ FASTA input ] GGCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGCUAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGCC
[ reference std structure ] (((((((.(((((((((.(((.(((((((((((.....))))))))))).))).))))))))).)))))))
[ reference ext structure ] ((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))
[ predicted structure ] ((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))
2L5Z_A [ FASTA input ] GAGCUGCAGCACGAAAGUGACGGCUC
[ reference std structure ] ((((((...(((....))).))))))
[ reference ext structure ] (((((((.)((((..)))).))))))
        (          )      
[ predicted structure ] ((((((...(((....))).))))))
2L5Z_A (ext) [ FASTA input ] GAGCUGCAGCACGAAAGUGACGGCUC
[ reference std structure ] ((((((...(((....))).))))))
[ reference ext structure ] (((((((.)((((..)))).))))))
        (          )      
[ predicted structure ] ((((((..(((((..)))))))))))
2L94_A (ext) [ FASTA input ] GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC
[ reference std structure ] ((((((((.((((((((((....))))))))))....))))))))
[ reference ext structure ] ((((((((((((((((((((..))))))))))))...))))))))
[ predicted structure ] (((((((((((((((((((....)))))))))))...))))))))
2L94_A [ FASTA input ] GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC
[ reference std structure ] ((((((((.((((((((((....))))))))))....))))))))
[ reference ext structure ] ((((((((((((((((((((..))))))))))))...))))))))
[ predicted structure ] (((((((((((((((((((....)))))))))))...))))))))
2LA5_A (ext) [ FASTA input ] GCUGCGGUGUGGAAGGAGUGGCUGGGUUGCGCAGCG
[ reference std structure ] (((((.((....................))))))).
[ reference ext structure ] ((((((<<).[(..{a.(.}A..]))..>>))))).
        (                )          
                    (   )           
     (           )                  
                   (   )            
           (   )                    
          (   )                     
[ predicted structure ] ((((((((...))))))))(((((((...)))))))
2LA5_A [ FASTA input ] GCUGCGGUGUGGAAGGAGUGGCUGGGUUGCGCAGCG
[ reference std structure ] (((((.((....................))))))).
[ reference ext structure ] ((((((<<).[(..{a.(.}A..]))..>>))))).
        (                )          
                    (   )           
     (           )                  
                   (   )            
           (   )                    
          (   )                     
[ predicted structure ] (((.(..(...)..).))).((((.(...).)))).
2LBS_A (ext) [ FASTA input ] GGGAUACCAUGUUCAAGUGAACGUGGUAUCUC
[ reference std structure ] ((((((((((((((....))))))))))))))
[ reference ext structure ] ((((((((((((((....))))))))))))))
[ predicted structure ] (((((((((((((((..)))))))))))))))
2LBS_A [ FASTA input ] GGGAUACCAUGUUCAAGUGAACGUGGUAUCUC
[ reference std structure ] ((((((((((((((....))))))))))))))
[ reference ext structure ] ((((((((((((((....))))))))))))))
[ predicted structure ] (((((((((((((((..)))))))))))))))
2LC8_A (ext) [ FASTA input ] GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA
[ reference std structure ] .(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]].
[ reference ext structure ] .((((((((((((({{{{{.[)))).))))).))).............])}}}}}.
                   (                             )      
[ predicted structure ] .(((((((((((((((..))))))).))))))))((((((((((..))))))))))
2LC8_A [ FASTA input ] GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA
[ reference std structure ] .(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]].
[ reference ext structure ] .((((((((((((({{{{{.[)))).))))).))).............])}}}}}.
                   (                             )      
[ predicted structure ] ..((.((((((((.(....).)))).)))).)).(..(((((.(..).)))))..)
2LDL_A (ext) [ FASTA input ] GGAUCCAUUCGAUUAGUGAACGGAUCC
[ reference std structure ] ((((((.(((.......))).))))))
[ reference ext structure ] ((((((((((.......))))))))))
     (                )    
[ predicted structure ] ((((((((((((...))))))))))))
2LDL_A [ FASTA input ] GGAUCCAUUCGAUUAGUGAACGGAUCC
[ reference std structure ] ((((((.(((.......))).))))))
[ reference ext structure ] ((((((((((.......))))))))))
     (                )    
[ predicted structure ] ((((((.((((.....)))).))))))
2LDT_A [ FASTA input ] GGGGAGUACGGCCGCAAGGUUAAAACUCCCC
[ reference std structure ] (((((((..((((....))))...)))))))
[ reference ext structure ] ((((((.(.(((((..))))).).).)))))
     (                   )     
            (     )            
      (                 )      
[ predicted structure ] (((((((...(((....)))....)))))))
2LDT_A (ext) [ FASTA input ] GGGGAGUACGGCCGCAAGGUUAAAACUCCCC
[ reference std structure ] (((((((..((((....))))...)))))))
[ reference ext structure ] ((((((.(.(((((..))))).).).)))))
     (                   )     
            (     )            
      (                 )      
[ predicted structure ] ((((((((((((((..)))).))))))))))
2LHP_A [ FASTA input ] GGGUGAAAUGGAGGACUUCGGUCCUCAAAUUUCACCC
[ reference std structure ] (((((((((.((((((....))))))..)))))))))
[ reference ext structure ] (((((((((.(((((((..)))))))..)))))))))
[ predicted structure ] (((((((((.(((((((..)))))))..)))))))))
2LHP_A (ext) [ FASTA input ] GGGUGAAAUGGAGGACUUCGGUCCUCAAAUUUCACCC
[ reference std structure ] (((((((((.((((((....))))))..)))))))))
[ reference ext structure ] (((((((((.(((((((..)))))))..)))))))))
[ predicted structure ] (((((((((((((((((..)))))))).)))))))))
2LI4_A (ext) [ FASTA input ] GGACCGAUAAGGUAGAAAUGCCUUAUCGGUCC
[ reference std structure ] ((((((((((((((....))))))))))))))
[ reference ext structure ] (((((((((((((((..)))))))))))))))
              ( )               
[ predicted structure ] (((((((((((((((..)))))))))))))))
2LI4_A [ FASTA input ] GGACCGAUAAGGUAGAAAUGCCUUAUCGGUCC
[ reference std structure ] ((((((((((((((....))))))))))))))
[ reference ext structure ] (((((((((((((((..)))))))))))))))
              ( )               
[ predicted structure ] ((((((((((((((....))))))))))))))
2LJJ_A (ext) [ FASTA input ] GGCCUCAGCACUACCCCAGUGUAGGUC
[ reference std structure ] ((((...(.((.......)).).))))
[ reference ext structure ] ((((...((((.......)))).))))
[ predicted structure ] (((((..(((((.....))))))))))
2LJJ_A [ FASTA input ] GGCCUCAGCACUACCCCAGUGUAGGUC
[ reference std structure ] ((((...(.((.......)).).))))
[ reference ext structure ] ((((...((((.......)))).))))
[ predicted structure ] (((((..(((((.....))))))))))
2LK3_A [ FASTA input ] GGCUUAGAUCAGAAAUGAUCAGCC
[ reference std structure ] ((((..(((((....)))))))))
[ reference ext structure ] ((((..((((((..))))))))))
[ predicted structure ] ((((..(((((....)))))))))
2LK3_A (ext) [ FASTA input ] GGCUUAGAUCAGAAAUGAUCAGCC
[ reference std structure ] ((((..(((((....)))))))))
[ reference ext structure ] ((((..((((((..))))))))))
[ predicted structure ] ((((..((((((..))))))))))
2LKR_A (ext) [ FASTA input ] GGCAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUCUUCGGGAAUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUC
[ reference std structure ] ((...((.......(((((((..(((.(((.....)))..)))........((((((((((((....)))))))))))).......)))..))))........))....))
[ reference ext structure ] ((((.(((.....((((((((.((((.((((...))))..)))).......((((((((.((((..))))).))))))).......)))..)))))......)))..))))
                                                          (            )                                       
                          (              )                                                                     
                                                           (          )                                        
                                                   (                           )                               
[ predicted structure ] (((((((((((((((((((((.(((((((((...))))).))))((((((((((((((((((((..)))))))))))))))))))))))..)))))).)))))))).))))
2LKR_A [ FASTA input ] GGCAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUCUUCGGGAAUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUC
[ reference std structure ] ((...((.......(((((((..(((.(((.....)))..)))........((((((((((((....)))))))))))).......)))..))))........))....))
[ reference ext structure ] ((((.(((.....((((((((.((((.((((...))))..)))).......((((((((.((((..))))).))))))).......)))..)))))......)))..))))
                                                          (            )                                       
                          (              )                                                                     
                                                           (          )                                        
                                                   (                           )                               
[ predicted structure ] ((((((((.(.(.((((((((.((((.(((.....)))..))))((.....(((((((((((((..))))))))))))).....)))))..)))))..).).)))).))))
2LQZ_A (ext) [ FASTA input ] GGACUUCCAUUGCUUCGGCAAAAGUCC
[ reference std structure ] (((((.....(((....)))..)))))
[ reference ext structure ] (((((...)(((((..)))))..))))
    (                 )    
[ predicted structure ] ((((((...(((((..)))))))))))
2LQZ_A [ FASTA input ] GGACUUCCAUUGCUUCGGCAAAAGUCC
[ reference std structure ] (((((.....(((....)))..)))))
[ reference ext structure ] (((((...)(((((..)))))..))))
    (                 )    
[ predicted structure ] ((((((...(((((..)))))))))))
2LU0_A [ FASTA input ] GGAAUAUGCUCAACGAAAGUGAAUCAGCUUCGGCUGAGAGCUAAGUUCC
[ reference std structure ] (((((..((((.((....))...(((((....)))))))))...)))))
[ reference ext structure ] (((((..((((.((....))...(((((....)))))))))...)))))
[ predicted structure ] (((((.(((((.((....))...((((((..)))))))))).).)))))
2LU0_A (ext) [ FASTA input ] GGAAUAUGCUCAACGAAAGUGAAUCAGCUUCGGCUGAGAGCUAAGUUCC
[ reference std structure ] (((((..((((.((....))...(((((....)))))))))...)))))
[ reference ext structure ] (((((..((((.((....))...(((((....)))))))))...)))))
[ predicted structure ] (((((((((((((((..))))..((((((..)))))))))).)))))))
2LUN_A [ FASTA input ] GGGCAGUGAUGCUUCGGCAUAUCAGCCC
[ reference std structure ] ((((.(...(((....)))...).))))
[ reference ext structure ] ((((.(.(((((....))))).).))))
[ predicted structure ] ((((.(..(((((..)))))..).))))
2LUN_A (ext) [ FASTA input ] GGGCAGUGAUGCUUCGGCAUAUCAGCCC
[ reference std structure ] ((((.(...(((....)))...).))))
[ reference ext structure ] ((((.(.(((((....))))).).))))
[ predicted structure ] (((((((((((((..)))))))))))))
2LV0_A [ FASTA input ] GGGCUAAUGUUGAAAAAUUAGCCC
[ reference std structure ] (((((((..........)))))))
[ reference ext structure ] (((((((.(......).)))))))
[ predicted structure ] ((((((((.((..)).))))))))
2LV0_A (ext) [ FASTA input ] GGGCUAAUGUUGAAAAAUUAGCCC
[ reference std structure ] (((((((..........)))))))
[ reference ext structure ] (((((((.(......).)))))))
[ predicted structure ] (((((((((((..)))))))))))
2LWK_A (ext) [ FASTA input ] GAGUAGAAACAAGGCUUCGGCCUGCUUUUGCU
[ reference std structure ] .(((((((.(..(((....))).).)))))))
[ reference ext structure ] .((((((((((.(((....)))))))))))))
[ predicted structure ] .(((((((((.(((((..))))))))))))))
2LWK_A [ FASTA input ] GAGUAGAAACAAGGCUUCGGCCUGCUUUUGCU
[ reference std structure ] .(((((((.(..(((....))).).)))))))
[ reference ext structure ] .((((((((((.(((....)))))))))))))
[ predicted structure ] .(((((((.(.(((((..)))))).)))))))
2M12_A (ext) [ FASTA input ] GGGUGUAUUGGAAAUGAGCACCC
[ reference std structure ] ((((((...........))))))
[ reference ext structure ] ((((((...........))))))
[ predicted structure ] ((((((.((((..))))))))))
2M12_A [ FASTA input ] GGGUGUAUUGGAAAUGAGCACCC
[ reference std structure ] ((((((...........))))))
[ reference ext structure ] ((((((...........))))))
[ predicted structure ] ((((((.(((....)))))))))
2M58_A (ext) [ FASTA input ] GAAGAAAGGGCUUCGGCCACUCAAACUACAGAGACGCCAGUCACUCAGAUAUCCUGGU
[ reference std structure ] ...((...(((....)))..))........(((...[[[[...))).......]]]].
[ reference ext structure ] ((.((((.((((..)))))))).)).....(((...[[[[...))).......]]]].
[ predicted structure ] ((((((((((((..)))))))...)))))(((((((..)))))))((((...))))..
2M58_A [ FASTA input ] GAAGAAAGGGCUUCGGCCACUCAAACUACAGAGACGCCAGUCACUCAGAUAUCCUGGU
[ reference std structure ] ...((...(((....)))..))........(((...[[[[...))).......]]]].
[ reference ext structure ] ((.((((.((((..)))))))).)).....(((...[[[[...))).......]]]].
[ predicted structure ] (.((.(..((((..))))..)....)).)((.(((....))).))(((.....)))..
2M8K_A [ FASTA input ] GGUUUCUUUUUAGUGAUUUUUCCAAACCCCUUUGUGCAAAAAUCAUUA
[ reference std structure ] (((((......[[[[[[[[[[[[))))).....].].]]]]]]]]]].
[ reference ext structure ] ((((([{<abcddddd......d))))).....D.].}>ABCDDDDD.
                  (                    )        
                (                        )      
                     (             )            
                   (                  )         
                 (                      )       
                    (                )          
[ predicted structure ] ..........((((((((((((((((....)))).).)))))))))))
2M8K_A (ext) [ FASTA input ] GGUUUCUUUUUAGUGAUUUUUCCAAACCCCUUUGUGCAAAAAUCAUUA
[ reference std structure ] (((((......[[[[[[[[[[[[))))).....].].]]]]]]]]]].
[ reference ext structure ] ((((([{<abcddddd......d))))).....D.].}>ABCDDDDD.
                  (                    )        
                (                        )      
                     (             )            
                   (                  )         
                 (                      )       
                    (                )          
[ predicted structure ] ..........(((((((((((((((((..))))).).)))))))))))
2MHI_A (ext) [ FASTA input ] GGAAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUUCGUCUCUGUUGUUUCC
[ reference std structure ] ((((((((...((.((((...))))))..(...((.....)).)).)))))))
[ reference ext structure ] ((((((((..(((.((((...))))))).(..(((.....))))).)))))))
[ predicted structure ] (((((((((((((.((((...))))))))).(((((...)))))).)))))))
2MHI_A [ FASTA input ] GGAAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUUCGUCUCUGUUGUUUCC
[ reference std structure ] ((((((((...((.((((...))))))..(...((.....)).)).)))))))
[ reference ext structure ] ((((((((..(((.((((...))))))).(..(((.....))))).)))))))
[ predicted structure ] (((((((((((((.((((...))))))))).((((.....))))).)))))))
2RP0_A [ FASTA input ] UCCGGUCGACUCCGGAGAAACAAAGUC
[ reference std structure ] (((((..[.[.)))))........].]
[ reference ext structure ] ((([{<a(....])))......}>A.)
            (        )     
    (      )               
         (              )  
           (           )   
[ predicted structure ] (((((......)))))((.......))
2RP0_A (ext) [ FASTA input ] UCCGGUCGACUCCGGAGAAACAAAGUC
[ reference std structure ] (((((..[.[.)))))........].]
[ reference ext structure ] ((([{<a(....])))......}>A.)
            (        )     
    (      )               
         (              )  
           (           )   
[ predicted structure ] ((((((....))))))((((...))))
2RPT_A (ext) [ FASTA input ] GGCCCGCCGAAAGGCCGGCC
[ reference std structure ] ((((.(((....))).))))
[ reference ext structure ] ((((.(((....))).))))
[ predicted structure ] (((((((((..)))))))))
2RPT_A [ FASTA input ] GGCCCGCCGAAAGGCCGGCC
[ reference std structure ] ((((.(((....))).))))
[ reference ext structure ] ((((.(((....))).))))
[ predicted structure ] ((((.(((....))).))))
2RRC_A [ FASTA input ] GGACCCACCACGGCGAGGUCCA
[ reference std structure ] ((((((.(....).).))))).
[ reference ext structure ] (((((((((..)))).))))).
              ()      
[ predicted structure ] ((((((.((..)).).))))).
2RRC_A (ext) [ FASTA input ] GGACCCACCACGGCGAGGUCCA
[ reference std structure ] ((((((.(....).).))))).
[ reference ext structure ] (((((((((..)))).))))).
              ()      
[ predicted structure ] (((((((((..)))).))))).
2WRQ_Y (ext) [ FASTA input ] GCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUGAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCA
[ reference std structure ] .((...(..(..............)..((((.......)))).......(.............).)...)).....
[ reference ext structure ] .((.(.({<(...}....(..(>.)..((((.......))))...)...[...[.).].....].)..))).....
           (          )                                                     
       (            )                                                       
[ predicted structure ] ((((...)))).(((((((((((((((((((((...))))))))))))((((((...)..))))))))))))))..
2WRQ_Y [ FASTA input ] GCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUGAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCA
[ reference std structure ] .((...(..(..............)..((((.......)))).......(.............).)...)).....
[ reference ext structure ] .((.(.({<(...}....(..(>.)..((((.......))))...)...[...[.).].....].)..))).....
           (          )                                                     
       (            )                                                       
[ predicted structure ] ((((...))))...(((((((((.(.(((((((...))))))).).))(((((.......))))))))))))....
2WW9_F (ext) [ FASTA input ] CCACGUCAACAGCAGUUGGACGUGG
[ reference std structure ] ((((((...((.....)).))))))
[ reference ext structure ] (((((((...(.....)).))))))
        (          )     
         (       )       
[ predicted structure ] ((((((((((....))).)))))))
2WW9_D [ FASTA input ] AGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUG
[ reference std structure ] .((((............).....(.((....(((....)))..........))..)...))).
[ reference ext structure ] (((({([<(.(.)..].}..)>((((((...(((..).))).......)..)).)).).))))
                  (                                        )   
                               (              )                
     (          )                                              
             (       )                                         
          ()                                                   
                      (                                 )      
                 ()                                            
[ predicted structure ] (..(((.(.((.....)).).)))..)((((.((((.((..)).)))).))))((((..))))
2WW9_E [ FASTA input ] UGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUAC
[ reference std structure ] ......(..((((....))))............)
[ reference ext structure ] [(..])(.((((((..))))))({(..}.))..)
    (                      )      
     (                       )    
[ predicted structure ] (..((((..))))..)..(.(..(....)..).)
2WW9_E (ext) [ FASTA input ] UGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUAC
[ reference std structure ] ......(..((((....))))............)
[ reference ext structure ] [(..])(.((((((..))))))({(..}.))..)
    (                      )      
     (                       )    
[ predicted structure ] (((((((..)))))))..(((((((..)))))))
2WW9_F [ FASTA input ] CCACGUCAACAGCAGUUGGACGUGG
[ reference std structure ] ((((((...((.....)).))))))
[ reference ext structure ] (((((((...(.....)).))))))
        (          )     
         (       )       
[ predicted structure ] ((((((((((....))).)))))))
2WW9_D (ext) [ FASTA input ] AGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUG
[ reference std structure ] .((((............).....(.((....(((....)))..........))..)...))).
[ reference ext structure ] (((({([<(.(.)..].}..)>((((((...(((..).))).......)..)).)).).))))
                  (                                        )   
                               (              )                
     (          )                                              
             (       )                                         
          ()                                                   
                      (                                 )      
                 ()                                            
[ predicted structure ] ((((((((((((...))))))))))))((((((((((((..))))))))))))((((..))))
2WWQ_V [ FASTA input ] CGGCACGUAGCGCAGCCUGGUAGCGCACCGUCAUGGGGUGUCGGGGGUCGGAGGUUCAAAUCCUCUCGUGCCGACCA
[ reference std structure ] (((((((..((((.........)))).(((.(.......).))).....((.((.......)).)))))))))....
[ reference ext structure ] ((((((((.[[[[)(.......]]].((((.((....).).))))]..)((.(((...)..)).)))))))))....
                               (        )                                    
             (       )                                                       
                      (                       )                              
         (               )                                                   
[ predicted structure ] ((..(((..((((.((...)).))))..)))..))((.((.((.(((..(((..(..)..))).))).)).)).)).
2WWQ_V (ext) [ FASTA input ] CGGCACGUAGCGCAGCCUGGUAGCGCACCGUCAUGGGGUGUCGGGGGUCGGAGGUUCAAAUCCUCUCGUGCCGACCA
[ reference std structure ] (((((((..((((.........)))).(((.(.......).))).....((.((.......)).)))))))))....
[ reference ext structure ] ((((((((.[[[[)(.......]]].((((.((....).).))))]..)((.(((...)..)).)))))))))....
                               (        )                                    
             (       )                                                       
                      (                       )                              
         (               )                                                   
[ predicted structure ] ((((((((((((((((...))))))))))))))))(((((((((((((.((((((..))))))))))))))))))).
2XKV_B [ FASTA input ] CUCUGUUGGUUCUCUGUGCUCUGUGCUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAGACGCAGAGCAGGCAGAUGUAGCUGGC
[ reference std structure ] .........(....(....((.......(((......((.....((......)).....))...)))........).)......)....)......
[ reference ext structure ] .........(...(((...(((.....((((......((....(((.(.)..)).)...))...))).).....)).).....)))...)......
                                           (          )                                         
                           (                                       )                            
                                             (       )                                          
[ predicted structure ] .((.((((..(((.(.((((((((((((((.((....)).))).(((....)))..(.(((..))).))).))))))))).).)))..)))).)).
2XKV_B (ext) [ FASTA input ] CUCUGUUGGUUCUCUGUGCUCUGUGCUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAGACGCAGAGCAGGCAGAUGUAGCUGGC
[ reference std structure ] .........(....(....((.......(((......((.....((......)).....))...)))........).)......)....)......
[ reference ext structure ] .........(...(((...(((.....((((......((....(((.(.)..)).)...))...))).).....)).).....)))...)......
                                           (          )                                         
                           (                                       )                            
                                             (       )                                          
[ predicted structure ] .((((((((((((((((((((((((((((((((....))))))(((((..))))).(((((..))))))).)))))))))))))))))))))))).
2XQD_Y [ FASTA input ] AGGGGCGUAGUUCAAUUGGUAGAACACCGGUCUCCAAAACCGGGUGUUGGGAGUUCGAGUCUCUCCGCCCCUGCCA
[ reference std structure ] ((.((((..((((........))))((((((.......))))).)...(((((.......))))))))).))....
[ reference ext structure ] ((((((((({{.[)(......])}.(((((((.....))))))})..)(((((.......))))))))))))....
           (          )                                                     
         (              )                                                   
[ predicted structure ] (((((((.(((((.((..)).))).(((((.((((((.((...)).))).))).))).))..)).)))))))....
2XQD_Y (ext) [ FASTA input ] AGGGGCGUAGUUCAAUUGGUAGAACACCGGUCUCCAAAACCGGGUGUUGGGAGUUCGAGUCUCUCCGCCCCUGCCA
[ reference std structure ] ((.((((..((((........))))((((((.......))))).)...(((((.......))))))))).))....
[ reference ext structure ] ((((((((({{.[)(......])}.(((((((.....))))))})..)(((((.......))))))))))))....
           (          )                                                     
         (              )                                                   
[ predicted structure ] ((((((((((((((((..))))))((((((((((((((((...)))))).))))))).))).))))))))))....
2XXA_G [ FASTA input ] GCAUUGCUGGUGCAGCGCAGCGCGGACGCCCGAACCUGGUCAGAGCCGGAAGGCAGCAGCCAUAAGGGAUGCUUUGCGGGUGCCGUUGCCUUCCGGCAAUGC
[ reference std structure ] (.((((((((.((((((((.(((((((((((.....((((....(((....)))....))))...))).)).))))))..)).))))))...)))))))).)
[ reference ext structure ] ((((((((((.((((((((((((((((((((((...((((...(((((..)))))...))))).))).))).))))))).)).))))))...))))))))))
                            (                                      )                                  
[ predicted structure ] ((((((((((...((.((((((.(..((((((...(((((....)))))((((((.(..((....))).)))))).))))))))))))))).))))))))))
2XXA_G (ext) [ FASTA input ] GCAUUGCUGGUGCAGCGCAGCGCGGACGCCCGAACCUGGUCAGAGCCGGAAGGCAGCAGCCAUAAGGGAUGCUUUGCGGGUGCCGUUGCCUUCCGGCAAUGC
[ reference std structure ] (.((((((((.((((((((.(((((((((((.....((((....(((....)))....))))...))).)).))))))..)).))))))...)))))))).)
[ reference ext structure ] ((((((((((.((((((((((((((((((((((...((((...(((((..)))))...))))).))).))).))))))).)).))))))...))))))))))
                            (                                      )                                  
[ predicted structure ] (((((((((((..((.((((((.(..(((((((..(((((....)))))((((((((..((....)))))))))))))))))))))))))))))))))))))
2Y8W_B (ext) [ FASTA input ] UCCCCACGCGUGUGGGGAUG
[ reference std structure ] .((((((....))))))...
[ reference ext structure ] .((((((....))))))...
[ predicted structure ] ((((((((..))))))))..
2Y8W_B [ FASTA input ] UCCCCACGCGUGUGGGGAUG
[ reference std structure ] .((((((....))))))...
[ reference ext structure ] .((((((....))))))...
[ predicted structure ] ((((((((..))))))))..
2Y9C_V [ FASTA input ] GCCGUGACGACUGAAAAGUCGGCAUUGGCAAUUUUUGACAGUCUCUAUGGGUAACCUAAGGAGACUGG
[ reference std structure ] ((..((.(((((....))))).))..).)..........(((((((..((....))...)))))))..
[ reference ext structure ] (((.(((((((((..))))))))).)).)..........((((((((.(((..))))..)))))))..
                                              (           )         
[ predicted structure ] .(((((.(((((....))))).)).((.(((...))).))((((((.((((...)))).)))))))))
2Y9C_V (ext) [ FASTA input ] GCCGUGACGACUGAAAAGUCGGCAUUGGCAAUUUUUGACAGUCUCUAUGGGUAACCUAAGGAGACUGG
[ reference std structure ] ((..((.(((((....))))).))..).)..........(((((((..((....))...)))))))..
[ reference ext structure ] (((.(((((((((..))))))))).)).)..........((((((((.(((..))))..)))))))..
                                              (           )         
[ predicted structure ] .((((((((((((..))))))))).((((((...))))))(((((((((((...))))))))))))))
2YIE_X (ext) [ FASTA input ] GAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU
[ reference std structure ] .............(((.......))).....((((......))))........
[ reference ext structure ] .........(.(.((((...)..))))..).(((((..)..))))........
            (             )                          
[ predicted structure ] ((((((((((((((((((..)))))))))))))))..((((..)))))))...
2YIE_Z (ext) [ FASTA input ] GAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG
[ reference std structure ] ......(((((.......))))).....(((......)))................
[ reference ext structure ] ....(.((((((...)..)))))..).(((((..)..))))...............
[ predicted structure ] ((((((((((((...)..)))))))))))((((((((((((...))))))))))))
2YIE_X [ FASTA input ] GAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU
[ reference std structure ] .............(((.......))).....((((......))))........
[ reference ext structure ] .........(.(.((((...)..))))..).(((((..)..))))........
            (             )                          
[ predicted structure ] (((((.(.((.(.(((......))).).)).).))..(.((..)).))))...
2YIE_Z [ FASTA input ] GAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG
[ reference std structure ] ......(((((.......))))).....(((......)))................
[ reference ext structure ] ....(.((((((...)..)))))..).(((((..)..))))...............
[ predicted structure ] (.(.(.(((((.......))))).).).).(.(...(((.......)))...).).
2ZY6_A (ext) [ FASTA input ] GCCCGGAUAGUGUCCUUGGGAAACCGAGUCCGGGCACC
[ reference std structure ] (((((((..(.(...........))...)))))))...
[ reference ext structure ] ((((((((((.(......).....))).)))))))...
           (           )              
[ predicted structure ] (((((((((((((((...))))))..)))))))))...
2ZY6_A [ FASTA input ] GCCCGGAUAGUGUCCUUGGGAAACCGAGUCCGGGCACC
[ reference std structure ] (((((((..(.(...........))...)))))))...
[ reference ext structure ] ((((((((((.(......).....))).)))))))...
           (           )              
[ predicted structure ] ((((((((.((.(((...))).))...))))))))...
2ZZN_D [ FASTA input ] GCCGGGGUAGUCUAGGGGCUAGGCAGCGGACUGCAGAUCCGCCUUACGUGGGUUCAAAUCCCACCCCCGGC
[ reference std structure ] (((((((..((([....(..]))).(((((.......))))).....(((((..)....))))))))))))
[ reference ext structure ] ((((((((.[[[[)<.{(..]]]].((((((.....))))))....>((((((}).)..))))))))))))
[ predicted structure ] (((((((((((((..))))))(..((((((((..)).)))).))..)(((((.......))))))))))))
2ZZN_D (ext) [ FASTA input ] GCCGGGGUAGUCUAGGGGCUAGGCAGCGGACUGCAGAUCCGCCUUACGUGGGUUCAAAUCCCACCCCCGGC
[ reference std structure ] (((((((..((([....(..]))).(((((.......))))).....(((((..)....))))))))))))
[ reference ext structure ] ((((((((.[[[[)<.{(..]]]].((((((.....))))))....>((((((}).)..))))))))))))
[ predicted structure ] (((((((((((((..))))))(((((((((((..)).)))).)))))((((((...)..))))))))))))
3A2K_C [ FASTA input ] GGACCUUUAGCUCAGUUGGUUAGAGCAGACGGCUCAUAACCGUCCGGCCGUAGGUUCGAGUCCUACAAGGUCCACCA
[ reference std structure ] (((((((..((([.....(...]))).(((((.......))))).....(((((..)....))))))))))))....
[ reference ext structure ] ((((((((.{{{)a...[(..A(}}}.(((((.......)))))..).(<<<<<(]).)).>>>>>)))))))....
            (         )                                                      
[ predicted structure ] (((((((..(.((.(.((((((((((.....)))).)))))).).)).)(((((.......))))))))))))....
3A2K_C (ext) [ FASTA input ] GGACCUUUAGCUCAGUUGGUUAGAGCAGACGGCUCAUAACCGUCCGGCCGUAGGUUCGAGUCCUACAAGGUCCACCA
[ reference std structure ] (((((((..((([.....(...]))).(((((.......))))).....(((((..)....))))))))))))....
[ reference ext structure ] ((((((((.{{{)a...[(..A(}}}.(((((.......)))))..).(<<<<<(]).)).>>>>>)))))))....
            (         )                                                      
[ predicted structure ] (((((((..((((((((((((((((((...))))).)))))))))))))((((((...)..))))))))))))....
3A3A_A [ FASTA input ] GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGC
[ reference std structure ] (((((((.(..((((([..(.])))))((((((.......)))))).(((((....))))).((((..)....))))).)))))))
[ reference ext structure ] (((((((((..(((((({[{.))))))(((((((..)...))))))((((((....))))))(((((]}.)}.)))))))))))))
                   ()                                                                 
[ predicted structure ] (((((((.(..((((((....))))))((((((.......)))))).(((((....))))).((((.......))))).)))))))
3A3A_A (ext) [ FASTA input ] GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGC
[ reference std structure ] (((((((.(..((((([..(.])))))((((((.......)))))).(((((....))))).((((..)....))))).)))))))
[ reference ext structure ] (((((((((..(((((({[{.))))))(((((((..)...))))))((((((....))))))(((((]}.)}.)))))))))))))
                   ()                                                                 
[ predicted structure ] (((((((((..(((((((..)))))))((((((((...))))))))((((((....))))))(((((...)..)))))))))))))
3AKZ_H [ FASTA input ] UGGGAGGUCGUCUAACGGUAGGACGGCGGACUCUGGAUCCGCUGGUGGAGGUUCGAGUCCUCCCCUCCCAGCCA
[ reference std structure ] .((((((..((((.......)))).(((((.......)))))....(((((.......))))))))))).....
[ reference ext structure ] ((((((((.[[[[)(.....]]]].((((((.....))))))...)((((((...)..))))))))))))....
             (     )                                                      
       (                                    )                             
                    (                       )                             
[ predicted structure ] (((((((.(((((.(...).)))))(.((((((..((.((.((...)).)).)))))))).).)))))))....
3AKZ_H (ext) [ FASTA input ] UGGGAGGUCGUCUAACGGUAGGACGGCGGACUCUGGAUCCGCUGGUGGAGGUUCGAGUCCUCCCCUCCCAGCCA
[ reference std structure ] .((((((..((((.......)))).(((((.......)))))....(((((.......))))))))))).....
[ reference ext structure ] ((((((((.[[[[)(.....]]]].((((((.....))))))...)((((((...)..))))))))))))....
             (     )                                                      
       (                                    )                             
                    (                       )                             
[ predicted structure ] (((((((((((((((...)))))))((((((((..((((((((...))))))))))))))))))))))))....
3AM1_B (ext) [ FASTA input ] GGCGCGGGGUACCGGGCUUGGUAGCCCGGGGCUUCGGCCGAGGGCGAGAGCCCUCGGGGUUCGAUUCCCCCCCUGCGCCGC
[ reference std structure ] (((((((((..(((((((....)))))))(((....)))((((((....))))))((((.......)))))))))))))..
[ reference ext structure ] (((((((((..((((((([[())))))))(((....)))(((((((..)))))))(((((]..)].)))))))))))))..
                    (                                        )                   
[ predicted structure ] (((((((((..((((((((..))))))))((((..))))(((((((..)))))))(((((...)..)))))))))))))..
3AM1_B [ FASTA input ] GGCGCGGGGUACCGGGCUUGGUAGCCCGGGGCUUCGGCCGAGGGCGAGAGCCCUCGGGGUUCGAUUCCCCCCCUGCGCCGC
[ reference std structure ] (((((((((..(((((((....)))))))(((....)))((((((....))))))((((.......)))))))))))))..
[ reference ext structure ] (((((((((..((((((([[())))))))(((....)))(((((((..)))))))(((((]..)].)))))))))))))..
                    (                                        )                   
[ predicted structure ] (((((((((..(((((((....)))))))((((..))))((((((....))))))((((.......)))))))))))))..
3AMU_B [ FASTA input ] GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCACCA
[ reference std structure ] (((((.(..((((..........)))).((((.........)))).....(((((.......)))))).)))))....
[ reference ext structure ] ((((((((({{.[)<....(...])}}.((((.........))))....>((((((.).)..))))))))))))....
           (            )                                                     
                       (                       )                              
             (        )                                                       
[ predicted structure ] (((((((..(..(.(((.(((.((((((..).)))).).))).))).).)(((((.......))))))))))))....
3AMU_B (ext) [ FASTA input ] GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCACCA
[ reference std structure ] (((((.(..((((..........)))).((((.........)))).....(((((.......)))))).)))))....
[ reference ext structure ] ((((((((({{.[)<....(...])}}.((((.........))))....>((((((.).)..))))))))))))....
           (            )                                                     
                       (                       )                              
             (        )                                                       
[ predicted structure ] (((((((..(.(((((((((((((((((..).)))).)))))))))))))((((((...)..))))))))))))....
3DW4_A (ext) [ FASTA input ] UGCUCCUAGUACGAGAGGACCGGAGUG
[ reference std structure ] .(((((.....(....)....))))).
[ reference ext structure ] .(((((..()(((..)))...))))).
         (        )        
[ predicted structure ] (((((((.(((((..))))))))))))
3DW4_A [ FASTA input ] UGCUCCUAGUACGAGAGGACCGGAGUG
[ reference std structure ] .(((((.....(....)....))))).
[ reference ext structure ] .(((((..()(((..)))...))))).
         (        )        
[ predicted structure ] ((((((..((.(....).)).))))))
3GCA_A [ FASTA input ] CUGGGUCGCAGUAACCCCAGUUAACAAAACAAG
[ reference std structure ] (((((...[.[....))))).........]..]
[ reference ext structure ] ((((<((({{)....>)))).......)..)}}
          (                  )   
                   ()            
               (           )     
    (                     )      
                (        )       
            (                 )  
          (  )                   
[ predicted structure ] ((.(.(.....((((....))))....).).))
3GCA_A (ext) [ FASTA input ] CUGGGUCGCAGUAACCCCAGUUAACAAAACAAG
[ reference std structure ] (((((...[.[....))))).........]..]
[ reference ext structure ] ((((<((({{)....>)))).......)..)}}
          (                  )   
                   ()            
               (           )     
    (                     )      
                (        )       
            (                 )  
          (  )                   
[ predicted structure ] ((((((((((.((((....))))))))))))))
3GX2_A [ FASTA input ] GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG
[ reference std structure ] ((((((((......(((...(((...[[)))......))).(((..(((....))).)))...(]]..(((((....)))))..))))))))).
[ reference ext structure ] ((((((((..({(.((((.((((.<<<<.))...).)))))(})..((((..))))...).).(>>>>((((((..))))))..))))))))).
                                           (             )                                    
                      (     )                                                                 
                                          (               )                                   
                             (                              )                                 
              (                         )                                                     
[ predicted structure ] ((((((((..(.(((.(((.(((..(.((..).).)..)))..(.((((....)))))))).))))(.(((((....))))).).)))))))).
3GX2_A (ext) [ FASTA input ] GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG
[ reference std structure ] ((((((((......(((...(((...[[)))......))).(((..(((....))).)))...(]]..(((((....)))))..))))))))).
[ reference ext structure ] ((((((((..({(.((((.((((.<<<<.))...).)))))(})..((((..))))...).).(>>>>((((((..))))))..))))))))).
                                           (             )                                    
                      (     )                                                                 
                                          (               )                                   
                             (                              )                                 
              (                         )                                                     
[ predicted structure ] (((((((((.(.(((((((((((((((((..).))))))))).(.(((((..))))))))))))))((((((((..))))))))))))))))).
3HAY_E [ FASTA input ] GGCUGCCUGGGUCCGCCUUGAGUGCCCGGGUGAGAAGCAUGAUCCCGGGUAAUUAUGGCGGACCCACA
[ reference std structure ] ........(((((((.(.......((((((.............)))))).......).)))))))...
[ reference ext structure ] ........(((((((((.......(((((((((.......))))))))).......)))))))))...
[ predicted structure ] ...((..((((((((((.(((.((((((((...(.....)...)))))))).))).))))))))))))
3HAY_E (ext) [ FASTA input ] GGCUGCCUGGGUCCGCCUUGAGUGCCCGGGUGAGAAGCAUGAUCCCGGGUAAUUAUGGCGGACCCACA
[ reference std structure ] ........(((((((.(.......((((((.............)))))).......).)))))))...
[ reference ext structure ] ........(((((((((.......(((((((((.......))))))))).......)))))))))...
[ predicted structure ] ...((..(((((((((((((((((((((((((((.....)))))))))))))))))))))))))))))
3HJW_D (ext) [ FASTA input ] GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA
[ reference std structure ] (((((((((.......(((((((.........)))))))......)))))))))....
[ reference ext structure ] (((((((((.......(((((((((.....)))))))))......)))))))))....
[ predicted structure ] (((((((((.((((((((((((((((..)).)))))))))))))))))))))))....
3HJW_D [ FASTA input ] GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA
[ reference std structure ] (((((((((.......(((((((.........)))))))......)))))))))....
[ reference ext structure ] (((((((((.......(((((((((.....)))))))))......)))))))))....
[ predicted structure ] (((((((((..(.((.(((((((.((..))..))))))).)).).)))))))))....
3IAB_R [ FASTA input ] GGACUCAGUAAUAUGCUUUGGAAACGAAGCUUACAAAAUGGAGUCC
[ reference std structure ] ((((((........((((((....))))))..........))))))
[ reference ext structure ] ((((((...(..).(((((((..)))))))..........))))))
[ predicted structure ] ((((((.((..((.((((((....)))))).))....)).))))))
3IAB_R (ext) [ FASTA input ] GGACUCAGUAAUAUGCUUUGGAAACGAAGCUUACAAAAUGGAGUCC
[ reference std structure ] ((((((........((((((....))))))..........))))))
[ reference ext structure ] ((((((...(..).(((((((..)))))))..........))))))
[ predicted structure ] (((((((((((((((((((((..)))))))))))..))))))))))
3ID5_D (ext) [ FASTA input ] GGGGCGCCCUCUGAGCGUUCGCGCUGUGAUGA
[ reference std structure ] ..........(...(((....)))......).
[ reference ext structure ] ..........(((((((....)))...)))).
          (                    )
              (         )       
[ predicted structure ] (((...)))(((((((((..)))))))))...
3ID5_D [ FASTA input ] GGGGCGCCCUCUGAGCGUUCGCGCUGUGAUGA
[ reference std structure ] ..........(...(((....)))......).
[ reference ext structure ] ..........(((((((....)))...)))).
          (                    )
              (         )       
[ predicted structure ] (((...)))((..(((((..)))))..))...
3IVN_B [ FASTA input ] GGCCAGUAUAACCUCAAUGAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGACUACUGGUC
[ reference std structure ] (((((((({..((((((......[[.))))))(.....})(((((.]]......)))))..))))))))
[ reference ext structure ] (((((((([(.(((((((.{{..{{)))))))).(...].(((((.}}().}}.))))).)))))))))
                                    (                        )       
                                (      )                             
                                  (  )                               
[ predicted structure ] ((((((((.....(((((..((((((((...((((..))))..))))))))..))..))).))))))))
3IVN_B (ext) [ FASTA input ] GGCCAGUAUAACCUCAAUGAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGACUACUGGUC
[ reference std structure ] (((((((({..((((((......[[.))))))(.....})(((((.]]......)))))..))))))))
[ reference ext structure ] (((((((([(.(((((((.{{..{{)))))))).(...].(((((.}}().}}.))))).)))))))))
                                    (                        )       
                                (      )                             
                                  (  )                               
[ predicted structure ] (((((((((....(((((((((((((((.((((((..))))))))))))))))))..))))))))))))
3IWN_A (ext) [ FASTA input ] CACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACGGCAUUGCACUCCGCCGUAGGUAGCGGGGUUACCGAUGG
[ reference std structure ] ((((......([...((((((....))))))..(])...(((.((((((((..((((..........))))))))).)))))))...)).)).
[ reference ext structure ] ((((......({...(((((((..)))))))..(}).(.(((.([[(((((..((((..........)))))))))))]].))))..)).)).
                        (                                                )                   
                                  (   )                                                      
                                           (                                    )            
[ predicted structure ] ...(((((((((((((((((((..)))))))(((((((((((...))))))).))))))))))))))))((((((((((...)))))))))).
3IWN_A [ FASTA input ] CACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACGGCAUUGCACUCCGCCGUAGGUAGCGGGGUUACCGAUGG
[ reference std structure ] ((((......([...((((((....))))))..(])...(((.((((((((..((((..........))))))))).)))))))...)).)).
[ reference ext structure ] ((((......({...(((((((..)))))))..(}).(.(((.([[(((((..((((..........)))))))))))]].))))..)).)).
                        (                                                )                   
                                  (   )                                                      
                                           (                                    )            
[ predicted structure ] ...((..((.((((.((((((....))))))(.((..(.(((...))).)...)).).)))).))..))(((.((((((...)))))).))).
3IZF_C [ FASTA input ] GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGGUAGAGCCUGACCGAGUAGUGUAUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
[ reference std structure ] (((((((((....(((((((......((.(((...(....)...)))...)).....))))))).(((((.......((((((((....)))))))).....))))).))))))))).
[ reference ext structure ] (((((((((....((((((((....(((.(((...[(...].).)))...)))...)))))))).((((((((.()((((((((((..)))))))))).)))))))).))))))))).
                          (                           )                                                               
                                  (         )                                                                         
                         (                             )                                                              
                                                                           (                      )                   
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                                        (  )                                                                          
 (                      )                                                                                             
                                 (           )                                                                        
                               ( )                                                                                    
                    (                                  )                                                              
[ predicted structure ] (((((((((....((((((((..(((((.(((...((..))...))).)))))...))))))))((((((..(..(.((((((((....)))))))).)..)))))))))))))))).
3IZF_C (ext) [ FASTA input ] GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGGUAGAGCCUGACCGAGUAGUGUAUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
[ reference std structure ] (((((((((....(((((((......((.(((...(....)...)))...)).....))))))).(((((.......((((((((....)))))))).....))))).))))))))).
[ reference ext structure ] (((((((((....((((((((....(((.(((...[(...].).)))...)))...)))))))).((((((((.()((((((((((..)))))))))).)))))))).))))))))).
                          (                           )                                                               
                                  (         )                                                                         
                         (                             )                                                              
                                                                           (                      )                   
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                                        (  )                                                                          
 (                      )                                                                                             
                                 (           )                                                                        
                               ( )                                                                                    
                    (                                  )                                                              
[ predicted structure ] (((((((((....(((((((((.((((((((((((((..))))))))))))))..)))))))))((((((..((.(((((((((((..)))))))))))).)))))))))))))))).
3J0L_7 [ FASTA input ] GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU
[ reference std structure ] (.(.(.((((.(...((.......))...).))))...)).)........
[ reference ext structure ] (((.((((((.(.(((((.....)))))..)))))..)))))........
                     (    )                       
           (                 )                    
[ predicted structure ] (((((.......)))))..(((.(((((..))))).)..((....)))).
3J0L_g (ext) [ FASTA input ] GAACCUGCGGCUUAAUUUGACUCAACACGGG
[ reference std structure ] .................((........))..
[ reference ext structure ] ......(.........[[[......).]].]
[ predicted structure ] ..(((((((((((((..)))))))))).)))
3J0L_2 (ext) [ FASTA input ] GCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACG
[ reference std structure ] (((..((((((.(...((.....((((....)))).....)).)))))..))))).((((.........))).)....................(((((.......))))).
[ reference ext structure ] ((([.(.((((.(...((....((((((..))))))....)).)))))..]))))(((((.(....)..))).))..........(...().).(((((.......))))).
      (                                           )                                                             
                                                         (              )                                       
[ predicted structure ] (((..).))(((((((((((((((((((..))))((((...((((((...))))))))).).)))))))))))))))(((((((..)))))))(((((.(((..))))))))
3J0L_1 [ FASTA input ] GAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACU
[ reference std structure ] ....((..(.(((.(.(.(.(((.....))).).))))).)..)).....
[ reference ext structure ] .((((((((.(((.(.(.(((((.....))))).))))).))))))..))
         (                              )         
[ predicted structure ] (..(((..(.((((..(((((((.....))))))))))).)..)))..).
3J0L_8 (ext) [ FASTA input ] GACCGUCGUGAGACAGGUUA
[ reference std structure ] (((((((....))).)))).
[ reference ext structure ] ((((((((..)))).)))).
[ predicted structure ] ((((((((..)))).)))).
3J0L_2 [ FASTA input ] GCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACG
[ reference std structure ] (((..((((((.(...((.....((((....)))).....)).)))))..))))).((((.........))).)....................(((((.......))))).
[ reference ext structure ] ((([.(.((((.(...((....((((((..))))))....)).)))))..]))))(((((.(....)..))).))..........(...().).(((((.......))))).
      (                                           )                                                             
                                                         (              )                                       
[ predicted structure ] (((..).))(..((..((((.((((((....)))(.((...(((.(.....).)))))..).))).))))..))..)(((((......)))))(((((.(((..))))))))
3J0L_1 (ext) [ FASTA input ] GAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACU
[ reference std structure ] ....((..(.(((.(.(.(.(((.....))).).))))).)..)).....
[ reference ext structure ] .((((((((.(((.(.(.(((((.....))))).))))).))))))..))
         (                              )         
[ predicted structure ] ((.(((((((((((..((((((((..).))))))))))))))))))).).
3J0L_h (ext) [ FASTA input ] CACCGCCCGUCGCUUGUAGUAACGAAUGGUCUGGUGAACCUUCUGGACUGCGACAGCAAUGUUGCGGAAAAAUAAGUAAACCCUACCAUUUGGAACAACAAGAAGUCGUAA
[ reference std structure ] .......((.(.(((((.....((((((((..(((..((.(..(...((((((((....))))))))...)..).))..)))..)))))))).....)))))..).))...
[ reference ext structure ] .....((((.(((((((....(((((((((((((((((((((((...((((((((....))))))))...)))))))))))))))))))))))....)))))).).)).))
                                                (                 )                                            
[ predicted structure ] ....((((((((((((((((((((((((((((((((((((((((((((((((((((..)))))))))))))))))))))))))))))))))))))))))))).))))))))
3J0L_g [ FASTA input ] GAACCUGCGGCUUAAUUUGACUCAACACGGG
[ reference std structure ] .................((........))..
[ reference ext structure ] ......(.........[[[......).]].]
[ predicted structure ] ...((((..(..(.(..).)..)..)).)).
3J0L_h [ FASTA input ] CACCGCCCGUCGCUUGUAGUAACGAAUGGUCUGGUGAACCUUCUGGACUGCGACAGCAAUGUUGCGGAAAAAUAAGUAAACCCUACCAUUUGGAACAACAAGAAGUCGUAA
[ reference std structure ] .......((.(.(((((.....((((((((..(((..((.(..(...((((((((....))))))))...)..).))..)))..)))))))).....)))))..).))...
[ reference ext structure ] .....((((.(((((((....(((((((((((((((((((((((...((((((((....))))))))...)))))))))))))))))))))))....)))))).).)).))
                                                (                 )                                            
[ predicted structure ] .......((.(.(((((.((..((((((((..(((..((.(..(...((((((((....))))))))...)..).))..)))..))))))))..)).)))))..).))...
3J0L_7 (ext) [ FASTA input ] GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU
[ reference std structure ] (.(.(.((((.(...((.......))...).))))...)).)........
[ reference ext structure ] (((.((((((.(.(((((.....)))))..)))))..)))))........
                     (    )                       
           (                 )                    
[ predicted structure ] ((((((...)..))))).((((((((((..)))))))..(((..))))))
3J0L_a (ext) [ FASTA input ] GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA
[ reference std structure ] .((((....[.[.[[[.....[[..))]].......]]]]])).....
[ reference ext structure ] (([[[.())(.(.((((...(((..]])))...)..)))))].)....
 (                                        )     
[ predicted structure ] (((.((((.(.(.(((..)))))))))((((((..)))))))))....
3J0L_8 [ FASTA input ] GACCGUCGUGAGACAGGUUA
[ reference std structure ] (((((((....))).)))).
[ reference ext structure ] ((((((((..)))).)))).
[ predicted structure ] (((((((....))).)))).
3J0L_a [ FASTA input ] GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA
[ reference std structure ] .((((....[.[.[[[.....[[..))]].......]]]]])).....
[ reference ext structure ] (([[[.())(.(.((((...(((..]])))...)..)))))].)....
 (                                        )     
[ predicted structure ] (((.(((..(.(.(((..))))).)))((.(.(..).).)))))....
3J16_L [ FASTA input ] UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA
[ reference std structure ] (((((((..((((........)))).(((((.......)))))....(((((.......))))))))))))....
[ reference ext structure ] (((((((((<<.[)({.{...])>>((((((.(..)..))))))..)((((((}..)}.))))))))))))....
           (          )                                                    
                     (                      )                              
[ predicted structure ] ((((((((.(...(.(((((.((.(.(((((.(...).))))).).)).))..))).)...).))))))))....
3J16_L (ext) [ FASTA input ] UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA
[ reference std structure ] (((((((..((((........)))).(((((.......)))))....(((((.......))))))))))))....
[ reference ext structure ] (((((((((<<.[)({.{...])>>((((((.(..)..))))))..)((((((}..)}.))))))))))))....
           (          )                                                    
                     (                      )                              
[ predicted structure ] (((((((((((((((((((((((((((((((((...)))))))))))))))..))))))))))))))))))....
3J20_0 (ext) [ FASTA input ] GCCGCCGUAGCUUAGCUGGUGGAGCGCCGGACUGUUAAUCCGGCGGUCCCCGGUUCGAAUCCGGGCGGCGGCGCCA
[ reference std structure ] (((((((..((([.....(..]))).(((((.......))))).....((.((..)....)).)))))))))....
[ reference ext structure ] ((((((((.{{{{)<..[(..}}}}.((((((.....))))))....>((((((]).)..))))))))))))....
         (                                  )                               
       (            )                                                       
                     (                       )                              
[ predicted structure ] (((((((((((...))))..(((((((((((.((..)))))))))))))(((((...)..)))).)))))))....
3J20_0 [ FASTA input ] GCCGCCGUAGCUUAGCUGGUGGAGCGCCGGACUGUUAAUCCGGCGGUCCCCGGUUCGAAUCCGGGCGGCGGCGCCA
[ reference std structure ] (((((((..((([.....(..]))).(((((.......))))).....((.((..)....)).)))))))))....
[ reference ext structure ] ((((((((.{{{{)<..[(..}}}}.((((((.....))))))....>((((((]).)..))))))))))))....
         (                                  )                               
       (            )                                                       
                     (                       )                              
[ predicted structure ] (((((((((((...))))..(((.(((((((.(....)))))))).)))((((.......)))).)))))))....
3J2L_3 (ext) [ FASTA input ] CGGCGGCCAUAGCGGGGGGGCCACACCCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCAGCGAUCCCGGUUGUACUGCCCUCCGAGAGGGGGCGGGAAGCCGGGGACGCCGCCGGCCACUAUC
[ reference std structure ] .((((((....(((.((((.....(.((((...(.....)...))))...)....)))).).))..(((((((....((((((.((....))))))))...)))))))..))))))..........
[ reference ext structure ] .((((((.(..(((.(({(}...(((((((.).[.(...])...)))..))...)).)).).)))((((((((..((((((((.(((..))))))))))).)))))))).)))))).(.)......
                                   (     )                                                                                    
                         (                          )                                                                         
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                             (             )                                                                                  
                          (                     )                                                                             
                        (                            )                                                                        
                                                  ( )                                                                         
[ predicted structure ] (((((((((((((((((((((((((((((((((((...))))))))))))))..)))))))))))))(((((((.((((((((.(((..))))))))))))))))))..)))))))).........
3J2L_3 [ FASTA input ] CGGCGGCCAUAGCGGGGGGGCCACACCCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCAGCGAUCCCGGUUGUACUGCCCUCCGAGAGGGGGCGGGAAGCCGGGGACGCCGCCGGCCACUAUC
[ reference std structure ] .((((((....(((.((((.....(.((((...(.....)...))))...)....)))).).))..(((((((....((((((.((....))))))))...)))))))..))))))..........
[ reference ext structure ] .((((((.(..(((.(({(}...(((((((.).[.(...])...)))..))...)).)).).)))((((((((..((((((((.(((..))))))))))).)))))))).)))))).(.)......
                                   (     )                                                                                    
                         (                          )                                                                         
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                 (                                      )                                                                     
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                                       (  )                                                                                   
                             (             )                                                                                  
                          (                     )                                                                             
                        (                            )                                                                        
                                                  ( )                                                                         
[ predicted structure ] (((((((.((.((.(((((((.((..((((..((.....))..))))..))...))))))).)).))(((((((.(.((((((.((....)))))))).))))))))...))))))).........
3J3D_C [ FASTA input ] AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA
[ reference std structure ] (((((((..(([.....(...])).(((((.......))))).......(((..)....)))..)))))))....
[ reference ext structure ] ((((((((({{..)(<a<..()}}((((((.......)))))).).)(((((A.>..>.))))))))))))....
           (         )                                                     
[ predicted structure ] (((((((((((((.((....)))))(((((.......)))))...(((((..)))))..)))..)))))))....
3J3D_C (ext) [ FASTA input ] AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA
[ reference std structure ] (((((((..(([.....(...])).(((((.......))))).......(((..)....)))..)))))))....
[ reference ext structure ] ((((((((({{..)(<a<..()}}((((((.......)))))).).)(((((A.>..>.))))))))))))....
           (         )                                                     
[ predicted structure ] (((((((((((((.(((..))))))(((((((...))))))).(((((((..))))))))))..)))))))....
3J3E_8 [ FASTA input ] AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG
[ reference std structure ] ........................................((((((.[[.....))).....(.((((.....]]...........))))..)...)))....((.....))...........
[ reference ext structure ] ..................................().<((((((((.{{(.).{))).[.}(].(((..(((.}}).)......).).))....).))))>).((.....))...........
                                                                  (                    )                                   
                                                                       (     )                                             
                                   (                                                                  )                    
                                                              (                             )                              
                                                                           ()                                              
                                                        ()                                                                 
                                                                   (                  )                                    
                                                          (                                  )                             
                                     (                                                                )                    
[ predicted structure ] .(((((.(((.(.(.....).).))).).))))((((((.(..(((((....)))))).)))))).(((..((..))..)))(((..)))(((.((.........)).)))((((....))))
3J3E_7 (ext) [ FASTA input ] GCCAACGACCAUACCACGCUGAAUACAUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUCGCGGGCGGUUAGUACUUAGAUGGGGGACCGCUUGGGAACACCGCGUGUUGUUGGCCU
[ reference std structure ] (((((((((.....(((((((.....(.((((...(....)...))))...)....)))))).).(.(((((.....((.((..((....)).)).))....))))).))))))))))..
[ reference ext structure ] (([[[[[[(...)[[[[[[[[.)..(<(((((...{(...}..)))))...>.).)]]]]]].]](((((((((()(((((((.(((..)))))))))).))))))))).]]]]]].)..
                          (                           )                                                                 
        (                                                                                                    )          
 (                                                                                                                  )   
                                                                           (                       )                    
                            (                    )                                                                      
                                 (           )                                                                          
         (  )                                                                                                           
                                        (  )                                                                            
[ predicted structure ] ((((((((((.......(((((((..(((((((((((..)))))))))))))))))).).)))(((((((((..(((((((((((((..)))))))))))))))))))))).))))))..
3J3E_8 (ext) [ FASTA input ] AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG
[ reference std structure ] ........................................((((((.[[.....))).....(.((((.....]]...........))))..)...)))....((.....))...........
[ reference ext structure ] ..................................().<((((((((.{{(.).{))).[.}(].(((..(((.}}).)......).).))....).))))>).((.....))...........
                                                                  (                    )                                   
                                                                       (     )                                             
                                   (                                                                  )                    
                                                              (                             )                              
                                                                           ()                                              
                                                        ()                                                                 
                                                                   (                  )                                    
                                                          (                                  )                             
                                     (                                                                )                    
[ predicted structure ] .((((((((((((((...)))))))))).))))((((((((..((((((..)))))))))))))).(((((((..)))))))(((..)))((((((((...)..)))))))((((....))))
3J3E_7 [ FASTA input ] GCCAACGACCAUACCACGCUGAAUACAUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUCGCGGGCGGUUAGUACUUAGAUGGGGGACCGCUUGGGAACACCGCGUGUUGUUGGCCU
[ reference std structure ] (((((((((.....(((((((.....(.((((...(....)...))))...)....)))))).).(.(((((.....((.((..((....)).)).))....))))).))))))))))..
[ reference ext structure ] (([[[[[[(...)[[[[[[[[.)..(<(((((...{(...}..)))))...>.).)]]]]]].]](((((((((()(((((((.(((..)))))))))).))))))))).]]]]]].)..
                          (                           )                                                                 
        (                                                                                                    )          
 (                                                                                                                  )   
                                                                           (                       )                    
                            (                    )                                                                      
                                 (           )                                                                          
         (  )                                                                                                           
                                        (  )                                                                            
[ predicted structure ] ((((((((((.......(((.(((...(((((..(((..)))..))))).))).))).).)))(((.(((((..((.(((((.(((....))).))))).))))))).))).))))))..
3J3F_8 (ext) [ FASTA input ] CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU
[ reference std structure ] ..........................................((.((.[[.....))......(.(((......]].............)))..)...)).....((....))(((((.((.......)).))))).....................
[ reference ext structure ] ....................................(.{(((((.((.[[....[))).(.].(((((.(((..]].)........)).)))).))...)))}))((....))(((((((((.....))))))))).....................
                                                         ()                                                                                                  
                                           (                                                      )                                                          
                                                                       (      )                                                                              
                                            (            )                                                                                                   
[ predicted structure ] ((((((((((((((((((((((((((((((((((((((((..((((((((..))))))))..(((((((((((....))))))))))))))))))))).)))).((((..)))))))))))))))))))..((((...))))).))))))))))...
3J3F_8 [ FASTA input ] CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU
[ reference std structure ] ..........................................((.((.[[.....))......(.(((......]].............)))..)...)).....((....))(((((.((.......)).))))).....................
[ reference ext structure ] ....................................(.{(((((.((.[[....[))).(.].(((((.(((..]].)........)).)))).))...)))}))((....))(((((((((.....))))))))).....................
                                                         ()                                                                                                  
                                           (                                                      )                                                          
                                                                       (      )                                                                              
                                            (            )                                                                                                   
[ predicted structure ] ((((.((((((((.(((.(.(..((((((.(.((((((((....((((((..))))))....((((((((..(....)..)))))))))))))))).)..))).((((..)))))))..).).))).))..((((...))))).))))).))))...
3J3F_7 [ FASTA input ] GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGGGUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUUU
[ reference std structure ] (((((((((....((((((((.....(.((((...(....)...))))...)....)))))).))(((((((.....((.((..((....)).)).))....))))))))))))))))...
[ reference ext structure ] ((((((((((..)((((((((....(((((((...(....)...))))..))...))))))).))(((((((.(()(((.(((.(((..)))))).))).).))))))))))))))))...
                          (                           )                                                                  
                                                ( )                                                                      
                            (                    )                                                                       
                           (                         )                                                                   
                                                                           (                       )                     
                                 (           )                                                                           
[ predicted structure ] (((((((((.((.(.((((((.(.((..((((..(((..)))..))))..)))...)))))).).)((((((...(.((.((..((....)).)).)).)..))))))))))))))))...
3J3F_7 (ext) [ FASTA input ] GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGGGUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUUU
[ reference std structure ] (((((((((....((((((((.....(.((((...(....)...))))...)....)))))).))(((((((.....((.((..((....)).)).))....))))))))))))))))...
[ reference ext structure ] ((((((((((..)((((((((....(((((((...(....)...))))..))...))))))).))(((((((.(()(((.(((.(((..)))))).))).).))))))))))))))))...
                          (                           )                                                                  
                                                ( )                                                                      
                            (                    )                                                                       
                           (                         )                                                                   
                                                                           (                       )                     
                                 (           )                                                                           
[ predicted structure ] (((((((((.(((((((((((((.(((((((((((((..))))))))))))))..)))))))))))((((((((.((((((((.(((..)))))))))))))))))))))))))))))...
3J45_4 [ FASTA input ] CGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGU
[ reference std structure ] ....(((((..(((........(((((..((....))...)))))........))))))))
              (                                      )       
[ reference ext structure ] ....(((((..(((...(((((((((((((((..))))).))))))))))...))))))))
              (                                      )       
[ predicted structure ] (((.(((....))((...(.(.(((.((.((....)).)).))).).)...)).).)))..
3J45_4 (ext) [ FASTA input ] CGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGU
[ reference std structure ] ....(((((..(((........(((((..((....))...)))))........))))))))
              (                                      )       
[ reference ext structure ] ....(((((..(((...(((((((((((((((..))))).))))))))))...))))))))
              (                                      )       
[ predicted structure ] ((((((((..)))(((((((((((((((((((..))))))))))))))))))).)))))..
3J46_4 (ext) [ FASTA input ] CUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAA
[ reference std structure ] ..(((((((((((.(.((.(...........(((...........(((.(((......))).)))..................)))..).)).).)))))))))))...
[ reference ext structure ] ..(((((((((((.((((((.(.([.{.).<.<<<.(.(...).((((.(((.....).)).))))....).......).]}>>>>..)))))).)))))))))))...
                               (                                                     )                       
                                                    (    )                                                   
                                                (             )                                              
                                                                            (   )                            
                              (                                                       )                      
                            (                                                )                               
                                                                      ()                                     
                                                   (      )                                                  
[ predicted structure ] .(((((((((((((((((((((((((((((((((((((((((...(((((((((..)))))))))))))))))))))).))))))))))))))))))))))))))))..
3J46_p [ FASTA input ] GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA
[ reference std structure ] (((((((...((..........)).....(.........)........((((.........)))))))))))....
[ reference ext structure ] ((((((((.[[[..{.<...)<]]](((.((.......)).))).>.}aaaaaa..>A..AAAAA)))))))....
              (                                           )                 
                         (                  )                               
[ predicted structure ] (((((((..((((.((..)).)))).((((((.....))))))(((.(.(((..))).).)))..)))))))....
3J46_1 (ext) [ FASTA input ] AAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUU
[ reference std structure ] ....((((.[..[[[.))).....{{{{{{...{{{]]]..].}}}.......}}}}}}...)
[ reference ext structure ] ....(((([{..{{.{)))...}<<<<<<<<<<<<<]}}..}.>>>>....>>>>>>>>>..)
      (              )                                         
              (                     )                          
                  ()                                           
                                 (                 )           
[ predicted structure ] .((((((((((((((...))))))))((((((((((((...)))))))....)))))))))))
3J46_4 [ FASTA input ] CUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAA
[ reference std structure ] ..(((((((((((.(.((.(...........(((...........(((.(((......))).)))..................)))..).)).).)))))))))))...
[ reference ext structure ] ..(((((((((((.((((((.(.([.{.).<.<<<.(.(...).((((.(((.....).)).))))....).......).]}>>>>..)))))).)))))))))))...
                               (                                                     )                       
                                                    (    )                                                   
                                                (             )                                              
                                                                            (   )                            
                              (                                                       )                      
                            (                                                )                               
                                                                      ()                                     
                                                   (      )                                                  
[ predicted structure ] ..(((((((((((.((((.(.((.(.((..(.((..((((((...((((((((....))))))))))))))..)).)...)).).)).).)))).)))))))))))...
3J46_2 (ext) [ FASTA input ] AAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGA
[ reference std structure ] .......((((((...((.....)).))))))....
[ reference ext structure ] .....(.(((((((...(.....)).)))))).)..
               (          )         
                (       )           
[ predicted structure ] ...(((((((((((..(((...))))))))))))))
3J46_2 [ FASTA input ] AAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGA
[ reference std structure ] .......((((((...((.....)).))))))....
[ reference ext structure ] .....(.(((((((...(.....)).)))))).)..
               (          )         
                (       )           
[ predicted structure ] ......((((((((..((.....))))))))))...
3J46_p (ext) [ FASTA input ] GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA
[ reference std structure ] (((((((...((..........)).....(.........)........((((.........)))))))))))....
[ reference ext structure ] ((((((((.[[[..{.<...)<]]](((.((.......)).))).>.}aaaaaa..>A..AAAAA)))))))....
              (                                           )                 
                         (                  )                               
[ predicted structure ] ((((((((((((((((..))))))))(((((((...)))))))(((((((((..))))))))).))))))))....
3J46_1 [ FASTA input ] AAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUU
[ reference std structure ] ....((((.[..[[[.))).....{{{{{{...{{{]]]..].}}}.......}}}}}}...)
[ reference ext structure ] ....(((([{..{{.{)))...}<<<<<<<<<<<<<]}}..}.>>>>....>>>>>>>>>..)
      (              )                                         
              (                     )                          
                  ()                                           
                                 (                 )           
[ predicted structure ] .(((.((((((.(((...))).))))((((((.(((.......))).)....))))))).)))
3J5B_1 (ext) [ FASTA input ] GGGUGAUUAGCUCAGCUGGGAGAGCACCUCCCUUACAAGGAGGGGGUCGGCGGUUCGAUCCCGUCAUCACCCACCA
[ reference std structure ] (((((.(..((((........))))...(((.......))).......(((((.......)))))).)))))....
[ reference ext structure ] (((((((([{{.{)<..ab..}]}}((((((.......))))))...>ccccccAB.C..CCCCC)))))))....
           (          )                                                     
                     (                       )                              
[ predicted structure ] (((((..((((...))))(((((((((((.((((..)))))))))(((((((((..))))))))))))))))))))
3J5B_1 [ FASTA input ] GGGUGAUUAGCUCAGCUGGGAGAGCACCUCCCUUACAAGGAGGGGGUCGGCGGUUCGAUCCCGUCAUCACCCACCA
[ reference std structure ] (((((.(..((((........))))...(((.......))).......(((((.......)))))).)))))....
[ reference ext structure ] (((((((([{{.{)<..ab..}]}}((((((.......))))))...>ccccccAB.C..CCCCC)))))))....
           (          )                                                     
                     (                       )                              
[ predicted structure ] .((((..((((...))))((.((.(.(((.((((..))))))).)(.(((.(.(..).).))).).)).)))))).
3J5N_W [ FASTA input ] GGCUACGUAGCUCAGUUGGUUAGAGCACAUCACUCAUAAUGAUGGGGUCACAGGUUCGAAUCCCGUCGUAGCCACCA
[ reference std structure ] (((((((..(((...........))).(((((.......)))))......(.((.......)).).)))))))....
[ reference ext structure ] (((((((([{{..)<..ab...b]}}((((((.......)))))).B.>cc.cccAB.C..CC.CC)))))))....
                                                  (              )           
           (           )                                                     
[ predicted structure ] (((((..)))))..(.((((((((.(.(((((.......))))).).))((.((.......)).))..)))))).).
3J5N_W (ext) [ FASTA input ] GGCUACGUAGCUCAGUUGGUUAGAGCACAUCACUCAUAAUGAUGGGGUCACAGGUUCGAAUCCCGUCGUAGCCACCA
[ reference std structure ] (((((((..(((...........))).(((((.......)))))......(.((.......)).).)))))))....
[ reference ext structure ] (((((((([{{..)<..ab...b]}}((((((.......)))))).B.>cc.cccAB.C..CC.CC)))))))....
                                                  (              )           
           (           )                                                     
[ predicted structure ] (((((..))))).(((((((((((((((((((((...))))))))))))((((((...)..)))))..)))))))))
3JYV_7 (ext) [ FASTA input ] GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
[ reference std structure ] .((((((..((([.....(..]))).((((.........)))).....(((((..)....))))))))))).....
[ reference ext structure ] (((((((((aa.{)(<.[<..})A.(((((((.....)))))))A..)((((((]>.)>.))))))))))))....
           (          )                                                     
         (              )                                                   
                     (                       )                              
[ predicted structure ] (((((((.((((((((((((((..))))))))))).)))((((((((((((..)))))))))))))))))))....
3JYV_7 [ FASTA input ] GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
[ reference std structure ] .((((((..((([.....(..]))).((((.........)))).....(((((..)....))))))))))).....
[ reference ext structure ] (((((((((aa.{)(<.[<..})A.(((((((.....)))))))A..)((((((]>.)>.))))))))))))....
           (          )                                                     
         (              )                                                   
                     (                       )                              
[ predicted structure ] (((((((.(.(((((((.((.(..).)).)))))).).)(((..((((..(..)..))))..))))))))))....
3JYX_3 (ext) [ FASTA input ] GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGUAGAGCCGACAGUAGUGUAGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
[ reference std structure ] (((((((......((..........(.........(....).........)..........)).(.........(..(..(...)..)..).........)....))))))).
[ reference ext structure ] ((((((((.....([.....((..)(((.......{(...})......)))...)....(.])((.......(((.((..(...)..)).))).......))).)))))))).
                                                  ( )                                                            
[ predicted structure ] (((((((((...((((((((((((((...)))))))))))))).(((((((((...((((((...))))))((((((((((...)))))))))))))))))))))))))))).
3JYX_4 [ FASTA input ] AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUAGGUUGCAGAAUUCCGUGAAUCAUCGAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
[ reference std structure ] ..........................................(.(((........))).......(..........................)......)................(((((((....))))))).......................
[ reference ext structure ] .(..)..............................().<((((({(([.....[.).}..)..(.(((.((..]].......))......))).)...))))>)...(....)...((((((((..)))))))).......................
                                                                                                            (   )                                            
                                             (          )                                                                                                    
                                      (                                                                 )                                                    
                                                                    (                     )                                                                  
                                                                                                           (     )                                           
[ predicted structure ] .....(((((....(((((((.((((((((((((((.((.......)).))..)))))..................))))..))).))......))))))))))(((.((..(((((((((((....)))))))))..)).....)).)))......
3JYX_3 [ FASTA input ] GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGUAGAGCCGACAGUAGUGUAGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
[ reference std structure ] (((((((......((..........(.........(....).........)..........)).(.........(..(..(...)..)..).........)....))))))).
[ reference ext structure ] ((((((((.....([.....((..)(((.......{(...})......)))...)....(.])((.......(((.((..(...)..)).))).......))).)))))))).
                                                  ( )                                                            
[ predicted structure ] (((((((((...(((...(.(.((((...)))).).)...))).(.(((.(((...((((.(...).))))(.(((((.((...)).))))).)))).))).)))))))))).
3JYX_4 (ext) [ FASTA input ] AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUAGGUUGCAGAAUUCCGUGAAUCAUCGAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
[ reference std structure ] ..........................................(.(((........))).......(..........................)......)................(((((((....))))))).......................
[ reference ext structure ] .(..)..............................().<((((({(([.....[.).}..)..(.(((.((..]].......))......))).)...))))>)...(....)...((((((((..)))))))).......................
                                                                                                            (   )                                            
                                             (          )                                                                                                    
                                      (                                                                 )                                                    
                                                                    (                     )                                                                  
                                                                                                           (     )                                           
[ predicted structure ] .....(((((....((((((((((((((((((((((((((.....))))))..)))))..................))))..))))))......))))))))))((((((((((((((((((((..))))))))))..))))...))))))......
3KTW_C [ FASTA input ] AGAUAGUCGUGGGUUCCCUUUCUGGAGGGAGAGGGAAUUCCACGUUGACCGGGGGAACCGGCCAGGCCCGGAAGGGAGCAACCGUGCCCGGCUAUC
[ reference std structure ] .(((....((..((((.((((((....)))))).))))...))......((((.....(((.....(((....))).....)))..))))...)))
[ reference ext structure ] .((..((.(((<((((.((((([..{(]))))).))))(>))).)....(((((.(...((.(..(((....})))).)..))))))))))..).)
                                                                     (  )                       
                                                          (                        )            
                                                               (              )                 
                                                              (                )                
  (                                                                                           ) 
                                                                    (    )                      
                                                (                                         )     
   (                                                                                         )  
                                                      (                            )            
                          (                                             )                       
[ predicted structure ] .(((((.((((((((((((((((....))))))))))).)))))(((.((((.....)))).))).((.((.(.((.....)).).)).)))))))
3KTW_C (ext) [ FASTA input ] AGAUAGUCGUGGGUUCCCUUUCUGGAGGGAGAGGGAAUUCCACGUUGACCGGGGGAACCGGCCAGGCCCGGAAGGGAGCAACCGUGCCCGGCUAUC
[ reference std structure ] .(((....((..((((.((((((....)))))).))))...))......((((.....(((.....(((....))).....)))..))))...)))
[ reference ext structure ] .((..((.(((<((((.((((([..{(]))))).))))(>))).)....(((((.(...((.(..(((....})))).)..))))))))))..).)
                                                                     (  )                       
                                                          (                        )            
                                                               (              )                 
                                                              (                )                
  (                                                                                           ) 
                                                                    (    )                      
                                                (                                         )     
   (                                                                                         )  
                                                      (                            )            
                          (                                             )                       
[ predicted structure ] .(((((.((((((((((((((((....))))))))))).)))))(((((((((...))))))))).((((((((((.(..))))))))))))))))
3LA5_A [ FASTA input ] GGCUUCAUAUAAUCCGAAUGAUAUGGUUUCGGAGCUUCCACCAAGAGCCUUAAACUCUUGACUAUGGAGUC
[ reference std structure ] ((((((((([..((((((......{{.))))))(.....])((((((}}.....))))))..)))))))))
[ reference ext structure ] (((((((((((.(((((((.[[[.[[)))))))).....).((((((]]..]]]))))))..)))))))))
                                                (   )                  
                         (                           )                 
                                     (                        )        
                                 (      )                              
                                    (                          )       
[ predicted structure ] (((((((((...((.(.(...((.(((((.((.(....).)).).)))).))...).).)).)))))))))
3LA5_A (ext) [ FASTA input ] GGCUUCAUAUAAUCCGAAUGAUAUGGUUUCGGAGCUUCCACCAAGAGCCUUAAACUCUUGACUAUGGAGUC
[ reference std structure ] ((((((((([..((((((......{{.))))))(.....])((((((}}.....))))))..)))))))))
[ reference ext structure ] (((((((((((.(((((((.[[[.[[)))))))).....).((((((]]..]]]))))))..)))))))))
                                                (   )                  
                         (                           )                 
                                     (                        )        
                                 (      )                              
                                    (                          )       
[ predicted structure ] ((((((((((..((((((((((((((((((((((....)))))).))))))))))))))))))))))))))
3NDB_M (ext) [ FASTA input ] GUCUCGUCCCGUGGGGCUCGGCGGUGGGGGAGCAUCUCCUGUAGGGGAGAUGUAACCCCCUUUACCUGCCGAACCCCGCCAGGCCCGGAAGGGAGCAACGGUAGGCAGGACGUCGGCGCUCACGGGGGUGCGGGAC
[ reference std structure ] .(((.(..(((((((((.(((((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).))))))).))))))).....).))).
[ reference ext structure ] .(((((.((((((((((.((((((((((([.((((((((({.(}))))))))).(])))))...((((((((....((((..((((...))))).).)))))))))))))))))))).)))))))....)))))).
                                                                               (                )                                       
                                           (                                              )                                             
                                                                                (              )                                        
                                                                           (                        )                                   
                                                                                      (  )                                              
                                                      (                    )                                                            
[ predicted structure ] ((((((((((((((((((((((((((((((((((((((((....)))))))))))))))....))).)))))))))))))...(((((((((((.(((((((((..)))))))))))))))))))))).)))))))
3NDB_M [ FASTA input ] GUCUCGUCCCGUGGGGCUCGGCGGUGGGGGAGCAUCUCCUGUAGGGGAGAUGUAACCCCCUUUACCUGCCGAACCCCGCCAGGCCCGGAAGGGAGCAACGGUAGGCAGGACGUCGGCGCUCACGGGGGUGCGGGAC
[ reference std structure ] .(((.(..(((((((((.(((((..(((((.(((((((((....)))))))))..)))))....((((((.....(((.....(((....))).....)))..)))))).))))))).))))))).....).))).
[ reference ext structure ] .(((((.((((((((((.((((((((((([.((((((((({.(}))))))))).(])))))...((((((((....((((..((((...))))).).)))))))))))))))))))).)))))))....)))))).
                                                                               (                )                                       
                                           (                                              )                                             
                                                                                (              )                                        
                                                                           (                        )                                   
                                                                                      (  )                                              
                                                      (                    )                                                            
[ predicted structure ] (((((((((.((((((.((((((((((((..(((((((((....)))))))))..))))....))).))))).))))))....((((..((.(..(.(((.(......).))).).).))..)))))).)))))))
3NKB_B (ext) [ FASTA input ] GGUCCGCAGCCUCCUCGCGGCGCAAGCUGGGCAACAUUCCGAAAGGUAAUGGCGAAUGCGGACC
[ reference std structure ] (((((((((((.[[....))).......]]....((((((....)).)))).....))))))))
[ reference ext structure ] (((((((((((({{..).))).......}..[}(.((((((..))).)))])....))))))))
            (                )                                  
                              ( )                               
                                  (               )             
                   (                                   )        
[ predicted structure ] (((((((((((((.((((((((..))))))).).(((((((..))).)))))))))))))))))
3NKB_B [ FASTA input ] GGUCCGCAGCCUCCUCGCGGCGCAAGCUGGGCAACAUUCCGAAAGGUAAUGGCGAAUGCGGACC
[ reference std structure ] (((((((((((.[[....))).......]]....((((((....)).)))).....))))))))
[ reference ext structure ] (((((((((((({{..).))).......}..[}(.((((((..))).)))])....))))))))
            (                )                                  
                              ( )                               
                                  (               )             
                   (                                   )        
[ predicted structure ] ((((((((..(.(.((.((((....)))).).).((((((....)).))))).)..))))))))
3NMU_E (ext) [ FASTA input ] GCCGUUGAAGCUCUGACCGAAAGGCGUGAUGAGC
[ reference std structure ] ............(...((....))......)...
[ reference ext structure ] ............((((((....))...))))...
[ predicted structure ] ((((((..)))((((((((..)))))))).).))
3NMU_E [ FASTA input ] GCCGUUGAAGCUCUGACCGAAAGGCGUGAUGAGC
[ reference std structure ] ............(...((....))......)...
[ reference ext structure ] ............((((((....))...))))...
[ predicted structure ] ((((((..)))((...((....))...)).).))
3O58_2 [ FASTA input ] GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
[ reference std structure ] (((((((((....((((((((.....((.......................))....)))))).)).(((((.......(((((..((....)).))))).....))))).))))))))).
[ reference ext structure ] (((((((((....((((((((....({((........[...(.]..)....)}.).))))))).)).(((((......(((((((.((....)))))))))....))))).))))))))).
                           (                       )                                                                     
[ predicted structure ] ((((((((((.((.((((..((..(.((.(....).)).)..))....)))).)).)(.(((....))).)(((..(.(((.(.(((.(((..))).))).).)))).)))))))))))).
3O58_3 (ext) [ FASTA input ] AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
[ reference std structure ] .........................................((((([..(.....]))....((..((.........)............))...).).)))....(((...))).((((((((....))))))))......................
[ reference ext structure ] ....................................(.{((((([((.<<....<).]..)>((.(.(.........>.>..........))...))..))))}))(((...)))(((((((((....))))))))).....................
                                                         ()                                                                                                   
                                      (                                                                  )                                                    
                                             (          )                                                                                                     
                                                                  (                        )                                                                  
                                                              (                                  )                                                            
                                                (                             )                                                                               
[ predicted structure ] .....(((((....(((((....)))))..((((((((((.....))))))..))))((((((..(((.(((((....)))))))).......)))))).)))))((((((((((((((((((((..))))))))))..))))...))))))......
3O58_3 [ FASTA input ] AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
[ reference std structure ] .........................................((((([..(.....]))....((..((.........)............))...).).)))....(((...))).((((((((....))))))))......................
[ reference ext structure ] ....................................(.{((((([((.<<....<).]..)>((.(.(.........>.>..........))...))..))))}))(((...)))(((((((((....))))))))).....................
                                                         ()                                                                                                   
                                      (                                                                  )                                                    
                                             (          )                                                                                                     
                                                                  (                        )                                                                  
                                                              (                                  )                                                            
                                                (                             )                                                                               
[ predicted structure ] .....(((((....(((((....)))))..((((((.((.......)).))..))))(((.((..(((.(((((....)))))))).......)).))).)))))(((.((..(((((((((((....)))))))))..)).....)).)))......
3O58_2 (ext) [ FASTA input ] GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
[ reference std structure ] (((((((((....((((((((.....((.......................))....)))))).)).(((((.......(((((..((....)).))))).....))))).))))))))).
[ reference ext structure ] (((((((((....((((((((....({((........[...(.]..)....)}.).))))))).)).(((((......(((((((.((....)))))))))....))))).))))))))).
                           (                       )                                                                     
[ predicted structure ] ((((((((((((((((((((((((((((((....))))))))))).).)))))))))(((((....)))))((((.(.(((((((((((((..))))))))))))))))))))))))))).
3OVB_D [ FASTA input ] GGAAGUAGAUGGUUCAAGUCCAUUUACUUCCACCA
[ reference std structure ] ((((.(((((((.......))))))).))))....
[ reference ext structure ] ((((.(((((((.......))))))).))))....
[ predicted structure ] ((((((((((((.......))))))))))))....
3OVB_D (ext) [ FASTA input ] GGAAGUAGAUGGUUCAAGUCCAUUUACUUCCACCA
[ reference std structure ] ((((.(((((((.......))))))).))))....
[ reference ext structure ] ((((.(((((((.......))))))).))))....
[ predicted structure ] (((((((((((((...)..))))))))))))....
3OVS_D [ FASTA input ] GGAAGUAGAUGGUUCAAGUCCAUUUACUUCCACC
[ reference std structure ] ((((((((((((.......))))))))))))...
[ reference ext structure ] (((((((((((((...)..))))))))))))...
[ predicted structure ] ((((((((((((.......))))))))))))...
3OVS_D (ext) [ FASTA input ] GGAAGUAGAUGGUUCAAGUCCAUUUACUUCCACC
[ reference std structure ] ((((((((((((.......))))))))))))...
[ reference ext structure ] (((((((((((((...)..))))))))))))...
[ predicted structure ] (((((((((((((...)..))))))))))))...
3P22_G (ext) [ FASTA input ] GCUGGGUUUUUCCUUCGAAAGAAGGUUUUUAUCCCAGUC
[ reference std structure ] ((((((.....(((((....))))).......)))))).
[ reference ext structure ] ((((((.....((((((..)))))).......)))))).
[ predicted structure ] (((((((((((((((((..)))))))..)))))))))).
3P22_G [ FASTA input ] GCUGGGUUUUUCCUUCGAAAGAAGGUUUUUAUCCCAGUC
[ reference std structure ] ((((((.....(((((....))))).......)))))).
[ reference ext structure ] ((((((.....((((((..)))))).......)))))).
[ predicted structure ] ((((((.(...(((((....))))).....).)))))).
3PDR_A [ FASTA input ] GGGCUUCGUUAGGUGAGGCUCCUGUAUGGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAAUGCAGCUGGAUGCUUGUCCUAUGCCAUACAGUGCUAAAGCUCUACGAUUGAAGCCCA
[ reference std structure ] ((((((((((.[[[..[[[..[[[[[[[[......[[[[[[(((((....((((....))))....))))).....[[[[[[[[[......)]]]]]]]]]..].]]]]].((........))....]]]]]]]].]]]...]]]..))....))))))).
[ reference ext structure ] (((((((([(.<<<<<<<<<.<<<<<<<<<a(.A.<<<<<<[[[[[[...[[[[..)(]]]]...]]]]]].{...{{{{{{{{b.{...))B}}}}}}}}}.>.>>>>>(((........)))).>>>>>>>>>>>>>>.>>>>..].().}))))))).
                                                                     (                                )                                                          
                   ()                                                                                                                                            
                                 (                                                                                           )                                   
       (                                                                                                                                            )            
                                                                                        (                                                               )        
                                                                                            (                                               )                    
                                                                                     (     )                                                                     
                               (                                                                                            )                                    
                                                                         (                                                              )                        
                                 (                                                                            )                                                  
[ predicted structure ] ((((((((.(.(..((.((((((((((((.(..(.(((((.(((((....((((....))))....)))))....((((((((((.......))))))))))...))))))((((....))))..).)))))))).)....)))))..).).)))))))).
3PDR_A (ext) [ FASTA input ] GGGCUUCGUUAGGUGAGGCUCCUGUAUGGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAAUGCAGCUGGAUGCUUGUCCUAUGCCAUACAGUGCUAAAGCUCUACGAUUGAAGCCCA
[ reference std structure ] ((((((((((.[[[..[[[..[[[[[[[[......[[[[[[(((((....((((....))))....))))).....[[[[[[[[[......)]]]]]]]]]..].]]]]].((........))....]]]]]]]].]]]...]]]..))....))))))).
[ reference ext structure ] (((((((([(.<<<<<<<<<.<<<<<<<<<a(.A.<<<<<<[[[[[[...[[[[..)(]]]]...]]]]]].{...{{{{{{{{b.{...))B}}}}}}}}}.>.>>>>>(((........)))).>>>>>>>>>>>>>>.>>>>..].().}))))))).
                                                                     (                                )                                                          
                   ()                                                                                                                                            
                                 (                                                                                           )                                   
       (                                                                                                                                            )            
                                                                                        (                                                               )        
                                                                                            (                                               )                    
                                                                                     (     )                                                                     
                               (                                                                                            )                                    
                                                                         (                                                              )                        
                                 (                                                                            )                                                  
[ predicted structure ] ((((((((((((((((.(((((((((((((((((.(((((((((((....((((....))))....)))))....(((((((((((.....)))))))))))..)))))))((((....)))))))))))))))).)....))))))))))))))))))).
3R4F_A [ FASTA input ] GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC
[ reference std structure ] ((((.((((((((.......((((......)))).))))))))...((((((....))))))))))
[ reference ext structure ] ((((((((((((((......(((((....)))))))))))))))..((((((....))))))))))
[ predicted structure ] ((((.(((((((((....))((((.(..).))))..)))))))...(((((((..)))))))))))
3R4F_A (ext) [ FASTA input ] GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC
[ reference std structure ] ((((.((((((((.......((((......)))).))))))))...((((((....))))))))))
[ reference ext structure ] ((((((((((((((......(((((....)))))))))))))))..((((((....))))))))))
[ predicted structure ] (((((((((((((((..)))((((((..))))))..))))))))..(((((((..)))))))))))
3R9X_C [ FASTA input ] CAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCU
[ reference std structure ] (((((((.(......).)))))))...........
[ reference ext structure ] (((((((.(.(...)).)))))))...........
          ( )                      
[ predicted structure ] .(((((((((....)))))))))(((.....))).
3R9X_C (ext) [ FASTA input ] CAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCU
[ reference std structure ] (((((((.(......).)))))))...........
[ reference ext structure ] (((((((.(.(...)).)))))))...........
          ( )                      
[ predicted structure ] .((((((((((..))))))))))((((...)))).
3RKF_A [ FASTA input ] GGCCAUAUAACUGCGUGGAUAUAGCACGCAGGUUUCUACCGGGCACUGUAAAUGUCCGACUAUGGUC
[ reference std structure ] ((((((([..(((((((.....{{)))))))(.....])((((((}}.....))))))..)))))))
[ reference ext structure ] (((((((((.(((((((.[[[.[[)))))))).....).((((((]]()]]]))))))..)))))))
                                   (                        )      
                                              (    )               
                               (      )                            
                                  (                          )     
                                              (   )                
                       (                           )               
[ predicted structure ] (((((((...(((((((.(..)..)))))))((....))((((((.(....)))))))..)))))))
3RKF_A (ext) [ FASTA input ] GGCCAUAUAACUGCGUGGAUAUAGCACGCAGGUUUCUACCGGGCACUGUAAAUGUCCGACUAUGGUC
[ reference std structure ] ((((((([..(((((((.....{{)))))))(.....])((((((}}.....))))))..)))))))
[ reference ext structure ] (((((((((.(((((((.[[[.[[)))))))).....).((((((]]()]]]))))))..)))))))
                                   (                        )      
                                              (    )               
                               (      )                            
                                  (                          )     
                                              (   )                
                       (                           )               
[ predicted structure ] (((((((((.(((((((((..)).)))))))(((..)))((((((.((..)))))))))))))))))
3SD1_A (ext) [ FASTA input ] GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCA
[ reference std structure ] ((((....((((((((((((......(((((((...[[[[....))))))).....((....))))).)))))))))..]]]].)))).
[ reference ext structure ] ((((((.({{{{{{{{{{{{..{{.{{{{{{{{.[.)((((].)}}}}}}}}.}}.(((..)))}}}.}}}}}}}}}.)))).))))).
                                                       (        )                        
                      (                                           )                      
                                 (         )                                             
                  (  )                                                                   
                                    (                                             )      
[ predicted structure ] ((((((((((((((((((((((((((((((((((((..)))))).))))))))))))((((..))))))))))))))...)))))))).
3SD1_A [ FASTA input ] GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCA
[ reference std structure ] ((((....((((((((((((......(((((((...[[[[....))))))).....((....))))).)))))))))..]]]].)))).
[ reference ext structure ] ((((((.({{{{{{{{{{{{..{{.{{{{{{{{.[.)((((].)}}}}}}}}.}}.(((..)))}}}.}}}}}}}}}.)))).))))).
                                                       (        )                        
                      (                                           )                      
                                 (         )                                             
                  (  )                                                                   
                                    (                                             )      
[ predicted structure ] ((((.(.(((((((((((.((...(((((((((........))).))))))...)).((.(..).))))))))))))...).).)))).
3SIU_F (ext) [ FASTA input ] CUGUCCAAUGAGCGCAUAGUGAGGGCAG
[ reference std structure ] ((((((.....((.....))..))))))
[ reference ext structure ] ((((((...(((((..).))))))))))
[ predicted structure ] ((((((((((((..)))))))..)))))
3SIU_F [ FASTA input ] CUGUCCAAUGAGCGCAUAGUGAGGGCAG
[ reference std structure ] ((((((.....((.....))..))))))
[ reference ext structure ] ((((((...(((((..).))))))))))
[ predicted structure ] (((((((.((.(..).)).))..)))))
3SN2_B (ext) [ FASTA input ] GAUUAUCGGAAGCAGUGCCUUCCAUAAUC
[ reference std structure ] ((((((.((((((...).)))))))))))
[ reference ext structure ] ((((((.((((((...).)))))))))))
[ predicted structure ] (((((((((((((...)))))))))))))
3SN2_B [ FASTA input ] GAUUAUCGGAAGCAGUGCCUUCCAUAAUC
[ reference std structure ] ((((((.((((((...).)))))))))))
[ reference ext structure ] ((((((.((((((...).)))))))))))
[ predicted structure ] ((((((.(((.((...)).))).))))))
3TRZ_Z (ext) [ FASTA input ] GGGCAGGGAUUUUGCCCGGAG
[ reference std structure ] (((((.......)))))....
[ reference ext structure ] (((((.......)))))(.).
[ predicted structure ] .(((((((((..)))))))))
3TRZ_Z [ FASTA input ] GGGCAGGGAUUUUGCCCGGAG
[ reference std structure ] (((((.......)))))....
[ reference ext structure ] (((((.......)))))(.).
[ predicted structure ] ...(.(((......))).)..
3TS0_U [ FASTA input ] GGGGUAGUGAUUUUACCCUGGAG
[ reference std structure ] ((((((.......))))))....
[ reference ext structure ] ((((((.......))))))....
[ predicted structure ] (((((((.....)))))))....
3TS0_U (ext) [ FASTA input ] GGGGUAGUGAUUUUACCCUGGAG
[ reference std structure ] ((((((.......))))))....
[ reference ext structure ] ((((((.......))))))....
[ predicted structure ] ((((((((...))))))))....
3TS2_V (ext) [ FASTA input ] GGGGUCUAUGAUACCACCCCGGAG
[ reference std structure ] (((((..........)))))....
[ reference ext structure ] (((((..........)))))....
[ predicted structure ] ((((((...))))))(((..))).
3TS2_V [ FASTA input ] GGGGUCUAUGAUACCACCCCGGAG
[ reference std structure ] (((((..........)))))....
[ reference ext structure ] (((((..........)))))....
[ predicted structure ] ((.(((...))).)).((..))..
3U4M_B [ FASTA input ] GGGAUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUUCCC
[ reference std structure ] ((((.(......(..[[[[[..(((......((((((((....))))))))...)))..........).]]]]]).))))
[ reference ext structure ] (((((((..(<.[[){{{{{{{{{{...{{{{{{{{{{....)]}}}}}}}}}}}}}}........>]}}}}}}))))))
                      (                                             )           
                                      (    )                                    
                                       (  )                                     
              (                                                )                
                                                             (     )            
                                                              (   )             
[ predicted structure ] ((((.(.((.(.((..((.((.((((.....(((((((((..)))))))))..)))).)).))...)).).)).).))))
3U4M_B (ext) [ FASTA input ] GGGAUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUUCCC
[ reference std structure ] ((((.(......(..[[[[[..(((......((((((((....))))))))...)))..........).]]]]]).))))
[ reference ext structure ] (((((((..(<.[[){{{{{{{{{{...{{{{{{{{{{....)]}}}}}}}}}}}}}}........>]}}}}}}))))))
                      (                                             )           
                                      (    )                                    
                                       (  )                                     
              (                                                )                
                                                             (     )            
                                                              (   )             
[ predicted structure ] ((((((((((((((((((((((((((...(((((((((((..)))))))))))))))))))))).)))))))))))))))
3VJR_D [ FASTA input ] GGGGGCUAAGCGGUUCGAUCCCGCUUAGCUCCACCA
[ reference std structure ] .((((((((((((.......))))))))))))....
[ reference ext structure ] .(((((((((((((...)..))))))))))))....
[ predicted structure ] (((((((((((((.......)))))))))))).)..
3VJR_D (ext) [ FASTA input ] GGGGGCUAAGCGGUUCGAUCCCGCUUAGCUCCACCA
[ reference std structure ] .((((((((((((.......))))))))))))....
[ reference ext structure ] .(((((((((((((...)..))))))))))))....
[ predicted structure ] ((((((((((((((...)..)))))))))))).)..
3WC1_P [ FASTA input ] GCCAUCAUAGUAUAGUGGUCAUUAUAAAUCGUUGUGGCCGAUUAGACCCAAGUUCGAUUCUUGGUGAUGGCAC
[ reference std structure ] .((((((..((............))..(..(.......)..).....(((((.......)))))))))))...
[ reference ext structure ] .((((((.([[.(.({{<..)))]]..((.(..()...).)).....aaaaaa}>.A}.AAAAA))))))...
[ predicted structure ] (((((((..((.((((((((((.((.....)).)))))).)))).))(((((.......))))))))))))..
3WC1_P (ext) [ FASTA input ] GCCAUCAUAGUAUAGUGGUCAUUAUAAAUCGUUGUGGCCGAUUAGACCCAAGUUCGAUUCUUGGUGAUGGCAC
[ reference std structure ] .((((((..((............))..(..(.......)..).....(((((.......)))))))))))...
[ reference ext structure ] .((((((.([[.(.({{<..)))]]..((.(..()...).)).....aaaaaa}>.A}.AAAAA))))))...
[ predicted structure ] (((((((..((((((((((((((((.....))))))))).)))))))((((((...)..))))))))))))..
3ZEX_D (ext) [ FASTA input ] GGGUACGACCAUACUUGGCCGAAUGCACCAUAUCCCGUCCGAUUUGUGAAGUUAAGCGGCCACAGGCCUCGUUAGUACGGCGAUCAGUGAUGGCGCUGGAACCCGGGGUGUUGUACUCU
[ reference std structure ] (((((((((....((((((((.....((.(((...(....)...)))...))....)))))).))((((((......((....(((....)))...)).....))))))))))))))).
[ reference ext structure ] (((((((((..[.((((((((.....((((((...{.(..})..)))..)))....)))))).))(.(((((.(.(((((((.((((..)))))))))))).)))))])))))))))).
                          (                           )                                                                
       (                                                                                                       )       
                                                                  (                                        )           
                                        (  )                                                                           
        (                                                                                                     )        
[ predicted structure ] ((((((((((((((((((((((((((((.(((((......))))))))))(((((((((((...)))))))))))))))))))..))).)))(((((((...)))))))))))))))).
3ZEX_C (ext) [ FASTA input ] AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG
[ reference std structure ] .........................................((((((.[[.....)))....(((((((...(.]].).........).)))).).).)))....((.....))(((((.(.(..((((....))))..).).))))).....................
[ reference ext structure ] ...................................[(..(.(((.((.{.(.){.)))(..}((((((..((..}..).......).)..))).))..))))].)(((..).))(((((((((.(((((....))))).))))))))).....................
                                                                                                                     (                           )                       
                                                         ()                                                                                                              
                                                 (                        )                                                                                              
                                      (                                                               )                                                                  
                                                                    (                  )                                                                                 
                                                                   (                     )                                                                               
                                       (                                                               )                                                                 
                                           (                                                      )                                                                      
                                                (                          )                                                                                             
                                                                        (    )                                                                                           
                                        (                                                            )                                                                   
                                             (              )                                                                                                            
                                                              (                                 )                                                                        
                                            (            )                                                                                                               
                                      (                                                                 )                                                                
[ predicted structure ] ......((((........((((((((........((((....)))).))))))))))))...(((((((.....................(((..................)))(((((((.(((((((....)))).)))))))))))))))))..............
3ZEX_H (ext) [ FASTA input ] UUUUGUCCCUCUCCAAACGAGAGUACAUGCAUGGGCUGGCAUGAGCGGCACGCUCCACGACCGUGGGGCUCGAGGGGCACUUUACGUCCCGAGGCGCUGAACCUUGAUGCUUGGAAUUUCAUGCUCAGGGACUUU
[ reference std structure ] .....(....(.......)......(.....(..(...(......(((...(((((((....))))))).......(...(...........)...)......))).....)......)...)....).).....
[ reference ext structure ] ...(((...[(](....))...(..(..((((.((...(.(...((((..((((((((....)))))))).(...((((.(...........).))))...).))))..).)......))..)))).)))).)..
                                             (                                                            )                            
                                                                                (            )                                         
    (                                                                                                                              )   
         (        )                                                                                                                    
[ predicted structure ] ....((((((((((..(((((((((((((((((((((((((((((((((((((((((((..)))))))..))))))))))))))))))))((((((...)))))).))))))))))))))))))))))))))...
3ZEX_G [ FASTA input ] GUGAGAUUGUGAAGGGAUCUCGCAGGCAUCGUGAGGGAAGUAUGGGGUAGUACGAGAGGAACUCCCAUGCCGUGCCUCUGGUUUCUGGAGUUUGUCGAAGGGCAAGUGCUCCGACGCUAUCGCACGGUGGUUCUCGGCUGAACGCCUCUAAGCCAGAAACCAGUCCCAAGACCGGGUGCCCG
[ reference std structure ] ...(((((.(...).)))))....((((((....(((..(..((((......(....).....))))..)((.((...((((....((((((((((....)))))..)))))...))))..)).)).((((....(.(.............).)....))))..))).......))))))..
[ reference ext structure ] ...((((((....).)))))....(((((((..(((((.(.(((((.((.((((..)))))).)))))).((((((...((((...((((((((((....)))))..))))).).))))..))))).((((((.(((((()((.))..)..)))))).)))).))))).....)))))))..
                                          (                        )                                                                                                                  
                                                                              (                                       )                                                               
                                                                                                                                             (    )                                   
                                                                                                                                     (                     )                          
                                                                                                                                                    ( )                               
                                                                        (                                                   )                                                         
         (   )                                                                                                                                                                        
                                       (                             )                                                                                                                
                                                                                                                                           (         )                                
                                                                                                                                            (     )                                   
[ predicted structure ] ..............................................................................((((((((((..(...........................................................).))))))))))(((....)))..........
3ZEX_D [ FASTA input ] GGGUACGACCAUACUUGGCCGAAUGCACCAUAUCCCGUCCGAUUUGUGAAGUUAAGCGGCCACAGGCCUCGUUAGUACGGCGAUCAGUGAUGGCGCUGGAACCCGGGGUGUUGUACUCU
[ reference std structure ] (((((((((....((((((((.....((.(((...(....)...)))...))....)))))).))((((((......((....(((....)))...)).....))))))))))))))).
[ reference ext structure ] (((((((((..[.((((((((.....((((((...{.(..})..)))..)))....)))))).))(.(((((.(.(((((((.((((..)))))))))))).)))))])))))))))).
                          (                           )                                                                
       (                                                                                                       )       
                                                                  (                                        )           
                                        (  )                                                                           
        (                                                                                                     )        
[ predicted structure ] ((((((((((((((((.((((.((.(((.(.(((......))).)))).).(.(.(.((((...)))).).).).).)))).)..))).)))((.((((...)))).))))))))))).
3ZEX_H [ FASTA input ] UUUUGUCCCUCUCCAAACGAGAGUACAUGCAUGGGCUGGCAUGAGCGGCACGCUCCACGACCGUGGGGCUCGAGGGGCACUUUACGUCCCGAGGCGCUGAACCUUGAUGCUUGGAAUUUCAUGCUCAGGGACUUU
[ reference std structure ] .....(....(.......)......(.....(..(...(......(((...(((((((....))))))).......(...(...........)...)......))).....)......)...)....).).....
[ reference ext structure ] ...(((...[(](....))...(..(..((((.((...(.(...((((..((((((((....)))))))).(...((((.(...........).))))...).))))..).)......))..)))).)))).)..
                                             (                                                            )                            
                                                                                (            )                                         
    (                                                                                                                              )   
         (        )                                                                                                                    
[ predicted structure ] ....((((((...(..(.((((.(.((.(((((((.((..(.(.((..(.(((((((((..)))))))..)).)..)).).)..)).)))((((.......)))).)))).)).).)))).))...))))))...
3ZEX_F [ FASTA input ] CGAAUCGCCACUUCUCUUAUCUGGGUGCUCUGCCCGCCCUUGUCGGCGCCCAGUACCUUCAUUUUCACAAGAU
[ reference std structure ] ..................................((((......)))).........................
[ reference ext structure ] ..................(..(.........[(((((((.().))))))].)..).)................
                   (                                    )                
[ predicted structure ] .(((.......)))((((((..(((((((..(((((.(...).))).))..)))))))..))......)))).
3ZEX_C [ FASTA input ] AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG
[ reference std structure ] .........................................((((((.[[.....)))....(((((((...(.]].).........).)))).).).)))....((.....))(((((.(.(..((((....))))..).).))))).....................
[ reference ext structure ] ...................................[(..(.(((.((.{.(.){.)))(..}((((((..((..}..).......).)..))).))..))))].)(((..).))(((((((((.(((((....))))).))))))))).....................
                                                                                                                     (                           )                       
                                                         ()                                                                                                              
                                                 (                        )                                                                                              
                                      (                                                               )                                                                  
                                                                    (                  )                                                                                 
                                                                   (                     )                                                                               
                                       (                                                               )                                                                 
                                           (                                                      )                                                                      
                                                (                          )                                                                                             
                                                                        (    )                                                                                           
                                        (                                                            )                                                                   
                                             (              )                                                                                                            
                                                              (                                 )                                                                        
                                            (            )                                                                                                               
                                      (                                                                 )                                                                
[ predicted structure ] ......((((........((((.(((........((((....)))).))).))))))))...(((((((.....................(((..................)))(((((((.((.((((....))))..))))))))))))))))..............
3ZEX_F (ext) [ FASTA input ] CGAAUCGCCACUUCUCUUAUCUGGGUGCUCUGCCCGCCCUUGUCGGCGCCCAGUACCUUCAUUUUCACAAGAU
[ reference std structure ] ..................................((((......)))).........................
[ reference ext structure ] ..................(..(.........[(((((((.().))))))].)..).)................
                   (                                    )                
[ predicted structure ] .(((((...)))))((((((((((((((((((((((((...))))).)))))))))))))))......)))).
3ZEX_G (ext) [ FASTA input ] GUGAGAUUGUGAAGGGAUCUCGCAGGCAUCGUGAGGGAAGUAUGGGGUAGUACGAGAGGAACUCCCAUGCCGUGCCUCUGGUUUCUGGAGUUUGUCGAAGGGCAAGUGCUCCGACGCUAUCGCACGGUGGUUCUCGGCUGAACGCCUCUAAGCCAGAAACCAGUCCCAAGACCGGGUGCCCG
[ reference std structure ] ...(((((.(...).)))))....((((((....(((..(..((((......(....).....))))..)((.((...((((....((((((((((....)))))..)))))...))))..)).)).((((....(.(.............).)....))))..))).......))))))..
[ reference ext structure ] ...((((((....).)))))....(((((((..(((((.(.(((((.((.((((..)))))).)))))).((((((...((((...((((((((((....)))))..))))).).))))..))))).((((((.(((((()((.))..)..)))))).)))).))))).....)))))))..
                                          (                        )                                                                                                                  
                                                                              (                                       )                                                               
                                                                                                                                             (    )                                   
                                                                                                                                     (                     )                          
                                                                                                                                                    ( )                               
                                                                        (                                                   )                                                         
         (   )                                                                                                                                                                        
                                       (                             )                                                                                                                
                                                                                                                                           (         )                                
                                                                                                                                            (     )                                   
[ predicted structure ] ..............................................................................(((((((((((.(...........................................................))))))))))))(((....)))..........
3ZND_W (ext) [ FASTA input ] GGGCCCUUAGCUUAGUCUGGUUAAAGCGAUCGGCUCAUAACCGAUUGGGCGCUGGUUCGAAUCCGGCAGGGCCCACCA
[ reference std structure ] ..(........(.............)..(((...........))).......(((.......))).......).....
[ reference ext structure ] .((((..(..{.{<(.......>)}}..(((([(.....])))))....)(((((.......)))))...))))....
           (             )                                                    
                       (                       )                              
          (               )                                                   
[ predicted structure ] (((((((..((((((((.((((((((((..).)))).)))))))))))))((((((...)..))))))))))))....
3ZND_W [ FASTA input ] GGGCCCUUAGCUUAGUCUGGUUAAAGCGAUCGGCUCAUAACCGAUUGGGCGCUGGUUCGAAUCCGGCAGGGCCCACCA
[ reference std structure ] ..(........(.............)..(((...........))).......(((.......))).......).....
[ reference ext structure ] .((((..(..{.{<(.......>)}}..(((([(.....])))))....)(((((.......)))))...))))....
           (             )                                                    
                       (                       )                              
          (               )                                                   
[ predicted structure ] (((((((..((((((((.(((((.((((..).)))..)))))))))))))(((((.......))))))))))))....
4A1C_2 (ext) [ FASTA input ] AGAAAAUUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGGAA
[ reference std structure ] ............................................((((((.[[.....))).....(.((((.....]]..........).)))..)...)))....((.....))(((((........)))))....................
[ reference ext structure ] .......................................(.<((((({((.[[....[).}..)](((((((.((..]]...)....).).)))).))..))))>))((.....))(((((........)))))....................
                                                            ()                                                                                            
                                         (                                                                )                                               
                                                                         (         )                                                                      
                                                (          )                                                                                              
[ predicted structure ] ........((((((((((((..(((((((((.........((((((((((((...((((((((((((...)))))))))))).)))))).)))))))))))))))..((((((.((((((((((..))))))))))))))))))))))))))))
4A1C_3 [ FASTA input ] GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAGCCU
[ reference std structure ] (((((((((....((((((((.....((((((...(....)...))))..))....)))))).))((((((......(((((..((....)).))))).....)))))))))))))))..
[ reference ext structure ] ((((((((({(.}((((((((....(<(((((...([[..)]].))))...>.).))))))).)))(((((..(.((((((((.(((..))))))))))))..))))).)))))))))..
                            (                    )                                                                      
                                  (         )                                                                           
                           (                      )                                                                     
                                                                 (                                          )           
                                        (  )                                                                            
                                 (           )                                                                          
                                                                                  (          )                          
                                   (        )                                                                           
[ predicted structure ] ((((((((((.(..(((((((..(((..((((...(....)...))))..)))...)))))))).)(((((.(..(.(((((.(((....)))))))).).).))))).)))))))))..
4A1C_2 [ FASTA input ] AGAAAAUUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGGAA
[ reference std structure ] ............................................((((((.[[.....))).....(.((((.....]]..........).)))..)...)))....((.....))(((((........)))))....................
[ reference ext structure ] .......................................(.<((((({((.[[....[).}..)](((((((.((..]]...)....).).)))).))..))))>))((.....))(((((........)))))....................
                                                            ()                                                                                            
                                         (                                                                )                                               
                                                                         (         )                                                                      
                                                (          )                                                                                              
[ predicted structure ] ........(((.(((.((((..((.(((.((.........(((.((.(((.(.....((((((.(((...))).))))))...).)))..)).))))).))).))..((((((.((((((((.(..).)))))))))))))))))).))).)))
4A1C_3 (ext) [ FASTA input ] GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAGCCU
[ reference std structure ] (((((((((....((((((((.....((((((...(....)...))))..))....)))))).))((((((......(((((..((....)).))))).....)))))))))))))))..
[ reference ext structure ] ((((((((({(.}((((((((....(<(((((...([[..)]].))))...>.).))))))).)))(((((..(.((((((((.(((..))))))))))))..))))).)))))))))..
                            (                    )                                                                      
                                  (         )                                                                           
                           (                      )                                                                     
                                                                 (                                          )           
                                        (  )                                                                            
                                 (           )                                                                          
                                                                                  (          )                          
                                   (        )                                                                           
[ predicted structure ] ((((((((((((..((((((((((((((((((((((....)))))))))))))).)))))))))))((((((((.(((((((.((((..))))))))))))))))))).)))))))))..
4A4U_A (ext) [ FASTA input ] GGACCCGGCUGACGCUGGGUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] (((((((((....)))))))))
[ predicted structure ] (((((((((....)))))))))
4A4U_A [ FASTA input ] GGACCCGGCUGACGCUGGGUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] (((((((((....)))))))))
[ predicted structure ] (((((((((....)))))))))
4ATO_G (ext) [ FASTA input ] AAAUUGGUGUAACCUUACCGUAGUAGGUGCUAA
[ reference std structure ] .....(((...[[[[.))).....]]]].....
[ reference ext structure ] .....(((...[[[[[)))....]]]]].....
      (              )           
                      ()         
[ predicted structure ] ...(((((...(((.(((....)))))))))))
4ATO_G [ FASTA input ] AAAUUGGUGUAACCUUACCGUAGUAGGUGCUAA
[ reference std structure ] .....(((...[[[[.))).....]]]].....
[ reference ext structure ] .....(((...[[[[[)))....]]]]].....
      (              )           
                      ()         
[ predicted structure ] ...(((((...(((.(((....)))))))))))
4BW0_A [ FASTA input ] GGGGGAGCCGAAAGGCGAAGAACCCA
[ reference std structure ] (((...(((....)))......))).
[ reference ext structure ] ((((((((((..)))))...))))).
     (             )      
[ predicted structure ] .(((..(((....)))......))).
4BW0_A (ext) [ FASTA input ] GGGGGAGCCGAAAGGCGAAGAACCCA
[ reference std structure ] (((...(((....)))......))).
[ reference ext structure ] ((((((((((..)))))...))))).
     (             )      
[ predicted structure ] ((((((((((..)))))....)))))
4BY9_A [ FASTA input ] GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
[ reference std structure ] ((((((....................(...((((....))))......).................))))))
[ reference ext structure ] ((((((...((((.............(((((((((..)))))...)))).............))))))))))
                          (                      )                      
[ predicted structure ] .(.(.((.(.((.(.((.(...(((.(...).)))....).)).).)).).)).).)((((.(...).))))
4BY9_A (ext) [ FASTA input ] GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
[ reference std structure ] ((((((....................(...((((....))))......).................))))))
[ reference ext structure ] ((((((...((((.............(((((((((..)))))...)))).............))))))))))
                          (                      )                      
[ predicted structure ] .((((((((((((((((((((((((((...)))))))).))))))))))))))))))((((((...))))))
4C7O_E (ext) [ FASTA input ] UGUUGGUUCUCCCGCAACGCGGAAGCGUGUGCCGGGAUGUAGCUGGCA
[ reference std structure ] (((((((.((((((((((((....)))).))).)))).)..)))))))
[ reference ext structure ] (((((((.(((((((((((((..))))).))).)))).)..)))))))
[ predicted structure ] (((((((((((((((((((((..))))).))).)))).).))))))))
4C7O_E [ FASTA input ] UGUUGGUUCUCCCGCAACGCGGAAGCGUGUGCCGGGAUGUAGCUGGCA
[ reference std structure ] (((((((.((((((((((((....)))).))).)))).)..)))))))
[ reference ext structure ] (((((((.(((((((((((((..))))).))).)))).)..)))))))
[ predicted structure ] ((((((((((((((((((((....)))).))).)))).).))))))))
4ENB_A [ FASTA input ] GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
[ reference std structure ] ((((..[[[[[[))))......(((((....)))))....]]]]]].....
[ reference ext structure ] {((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....
 (            )                                    
[ predicted structure ] ..((..((((((......(.(.(((((....))))).).)))))))..).)
4ENB_A (ext) [ FASTA input ] GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
[ reference std structure ] ((((..[[[[[[))))......(((((....)))))....]]]]]].....
[ reference ext structure ] {((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....
 (            )                                    
[ predicted structure ] ..((((((((((......((((((((((..))))))))))))))))))).)
4ENC_A [ FASTA input ] GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
[ reference std structure ] .((((..[[[[[[))))......(((((....)))))....]]]]]].....
[ reference ext structure ] .{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....
  (            )                                    
[ predicted structure ] ((..((.(.(((..)))(.(.(.(((((....))))).).).)).))..)).
4ENC_A (ext) [ FASTA input ] GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
[ reference std structure ] .((((..[[[[[[))))......(((((....)))))....]]]]]].....
[ reference ext structure ] .{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....
  (            )                                    
[ predicted structure ] ((((((((.(((..)))((((((((((((..)))))))))))))))))))).
4FNJ_A (ext) [ FASTA input ] CUGCUGGCUAAGGCAUGAAAGUGCUAUGCCUGCUG
[ reference std structure ] (.((.(((..((((((....))))).)))).)).)
[ reference ext structure ] ((((.((((()((((((..))))))).))).))))
          (               )        
[ predicted structure ] ((((((((.((((((((..))))))))))))))))
4FNJ_A [ FASTA input ] CUGCUGGCUAAGGCAUGAAAGUGCUAUGCCUGCUG
[ reference std structure ] (.((.(((..((((((....))))).)))).)).)
[ reference ext structure ] ((((.((((()((((((..))))))).))).))))
          (               )        
[ predicted structure ] (.((.(((.(.(((((....))))).)))).)).)
4FRG_B [ FASTA input ] GGCCUAAAAGCAUAGUGGGAAAGUGACGUGAAAUUCGUCCAGAUGCGAAAGCAUACGGUUAUACUCCGAAUGCCACCUAGGCCA
[ reference std structure ] ((((((........((((....(.((((.......)))))((((((....)))).[[[.....))]]]....)))).)))))).
[ reference ext structure ] ((((((...{(.}.((((...<(.(((([(..]..)))))(>(((((..)))))(((((.).).)))))..))))).)))))).
                                         (                     )                    
[ predicted structure ] ((((((...((((..((((..(((..(..)..)))..)))).))))(...((((.(((.......))).))))...))))))).
4FRG_B (ext) [ FASTA input ] GGCCUAAAAGCAUAGUGGGAAAGUGACGUGAAAUUCGUCCAGAUGCGAAAGCAUACGGUUAUACUCCGAAUGCCACCUAGGCCA
[ reference std structure ] ((((((........((((....(.((((.......)))))((((((....)))).[[[.....))]]]....)))).)))))).
[ reference ext structure ] ((((((...{(.}.((((...<(.(((([(..]..)))))(>(((((..)))))(((((.).).)))))..))))).)))))).
                                         (                     )                    
[ predicted structure ] ((((((...(((((.((((((((((((..)))))))))))))))))(((((((((((((...)..)))))))))))))))))).
4FRN_A (ext) [ FASTA input ] GGGCUAAAAGCAUGGUGGGAAAGUGACGUGUAAUUCGUCCACAUUACUUGAUACGGUUAUACUCCGAAUGCCACCUAGCCCAAAGUAGAGCAAGGAGACUCA
[ reference std structure ] .(((((.......(((((....(.((((.......)))))(.(([.[[[.)).{{{......)}}}....)))))))))).......(((.]]]...]))).
[ reference ext structure ] .(((((...{(.}(((((....(.(((([(..]..)))))(.(.<.<<<<).aaaa(.).).)AAAA..))))))))))).......(((>>>>...>))).
                                          (        )                                                  
                                           (      )                                                   
[ predicted structure ] (((((..((((((((((((((((((((..))))))))))))))))))))((((((((...)..)))))).)..((((((((((..)))))))))))))))..
4FRN_A [ FASTA input ] GGGCUAAAAGCAUGGUGGGAAAGUGACGUGUAAUUCGUCCACAUUACUUGAUACGGUUAUACUCCGAAUGCCACCUAGCCCAAAGUAGAGCAAGGAGACUCA
[ reference std structure ] .(((((.......(((((....(.((((.......)))))(.(([.[[[.)).{{{......)}}}....)))))))))).......(((.]]]...]))).
[ reference ext structure ] .(((((...{(.}(((((....(.(((([(..]..)))))(.(.<.<<<<).aaaa(.).).)AAAA..))))))))))).......(((>>>>...>))).
                                          (        )                                                  
                                           (      )                                                   
[ predicted structure ] ((.((..(((.(..(((((..(((.((..)).)))..)))))..).)))(((.(((.......))).)).)..(((.((.(.(..).).)).))))).))..
4HXH_A (ext) [ FASTA input ] CCAAAGGCUCUUUUCAGAGCCACCCA
[ reference std structure ] .....((((((....)))))).....
[ reference ext structure ] .....((((((....)))))).....
[ predicted structure ] .((((((((((....)))))))))).
4HXH_A [ FASTA input ] CCAAAGGCUCUUUUCAGAGCCACCCA
[ reference std structure ] .....((((((....)))))).....
[ reference ext structure ] .....((((((....)))))).....
[ predicted structure ] .....((((((....)))))).....
4JF2_A [ FASTA input ] GAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA
[ reference std structure ] (((((((....))))))).((((((((.......[[[[[..))))))))......((((....))))..]]]]]..
[ reference ext structure ] ((((((((..)))))))).(((((((((.((...<<<...)))))))))....(.(((((..)))))).))>>>..
                                                      (            )        
                                      (                              )      
                                     (                                )     
[ predicted structure ] (((((((....)))))))..(((((((.(..(.....)..))))))))((.((..(((((..)))))..)).))..
4JF2_A (ext) [ FASTA input ] GAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA
[ reference std structure ] (((((((....))))))).((((((((.......[[[[[..))))))))......((((....))))..]]]]]..
[ reference ext structure ] ((((((((..)))))))).(((((((((.((...<<<...)))))))))....(.(((((..)))))).))>>>..
                                                      (            )        
                                      (                              )      
                                     (                                )     
[ predicted structure ] ((((((((..))))))))..(((((((.(((((...))))))))))))((((((((((((..))))))))))))..
4JRC_A (ext) [ FASTA input ] GAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC
[ reference std structure ] (((((...(((((.....(..[[[[[[..........)]]]]]]))))).))))).
[ reference ext structure ] ((((((...((((...[{(.]((((((.........})))))))))))).))))).
                                (   )                   
       (                                          )     
                    (            )                      
        (                                       )       
[ predicted structure ] (((((((((((((((..((..))))))))(((((((..))))))).))))))))).
4JRC_A [ FASTA input ] GAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC
[ reference std structure ] (((((...(((((.....(..[[[[[[..........)]]]]]]))))).))))).
[ reference ext structure ] ((((((...((((...[{(.]((((((.........})))))))))))).))))).
                                (   )                   
       (                                          )     
                    (            )                      
        (                                       )       
[ predicted structure ] (((((.(((((((((..((..))))))))((.((((..)))).)).))).))))).
4K27_U (ext) [ FASTA input ] GCCCCUGCCUGCCUGCAGCUAAGGAUGAAAGUCUAUGCUGCCUGCCUGCCUGGGC
[ reference std structure ] ((((..((..((..(((((...((((....))))..)))))..))..))..))))
[ reference ext structure ] ((((..((((((((((((((()(((((..)))))).)))))))))))))..))))
[ predicted structure ] (((((((((((((((((((.(((((((..))))))))))))))))))))))))))
4K27_U [ FASTA input ] GCCCCUGCCUGCCUGCAGCUAAGGAUGAAAGUCUAUGCUGCCUGCCUGCCUGGGC
[ reference std structure ] ((((..((..((..(((((...((((....))))..)))))..))..))..))))
[ reference ext structure ] ((((..((((((((((((((()(((((..)))))).)))))))))))))..))))
[ predicted structure ] ((((..((..((..(((((.(.((((....)))).))))))..))..))..))))
4M4O_B [ FASTA input ] GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC
[ reference std structure ] ((((((.(((((.((.......((((.(.(.[..)]..).)))))).))))).))))))
[ reference ext structure ] (((((((((((((((..(...)((((.(.(.[..)]..).)))))))))))))))))))
                                ( )                        
                              (       )                    
[ predicted structure ] ((((((.(((((.((..((.(.((.(((...))).)).).))..)).))))).))))))
4M4O_B (ext) [ FASTA input ] GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC
[ reference std structure ] ((((((.(((((.((.......((((.(.(.[..)]..).)))))).))))).))))))
[ reference ext structure ] (((((((((((((((..(...)((((.(.(.[..)]..).)))))))))))))))))))
                                ( )                        
                              (       )                    
[ predicted structure ] ((((((((((((((((((((((((((((...))))))))))))))))))))))))))))
4M6D_L [ FASTA input ] GGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCC
[ reference std structure ] .(((..(.......((...(.(.[..)]..)...)))..))).
[ reference ext structure ] .((((.(..(...)((...(.(.[..)]..)...))).)))).
                        ( )                
 (                                        )
                      (       )            
          (  )                             
[ predicted structure ] ((((.((..((.(.((.(((...))).)).).))..)).))))
4M6D_D [ FASTA input ] GGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGC
[ reference std structure ] .(((.((.......((((...(.[..)]....)))))).)))
[ reference ext structure ] .((((((...(..)((((.(.(.[..)]..).))))))))))
                        ( )               
                      (       )           
[ predicted structure ] .(((.((..((.(.((.(((...))).)).).))..)).)))
4M6D_D (ext) [ FASTA input ] GGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGC
[ reference std structure ] .(((.((.......((((...(.[..)]....)))))).)))
[ reference ext structure ] .((((((...(..)((((.(.(.[..)]..).))))))))))
                        ( )               
                      (       )           
[ predicted structure ] .(((((((((((((((((((...)))))))))))))))))))
4M6D_L (ext) [ FASTA input ] GGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCC
[ reference std structure ] .(((..(.......((...(.(.[..)]..)...)))..))).
[ reference ext structure ] .((((.(..(...)((...(.(.[..)]..)...))).)))).
                        ( )                
 (                                        )
                      (       )            
          (  )                             
[ predicted structure ] ((((((((((((((((((((...))))))))))))))))))))
4M6D_F (ext) [ FASTA input ] GCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGC
[ reference std structure ] ..(.((.......((((.(.(.[..)]..).)))))).)..
[ reference ext structure ] .(((((..(...)((((.(.(.[..)]..).)))))))).)
                       ( )               
                     (       )           
[ predicted structure ] (((((((((((((((((((...)))))))))))))))))))
4M6D_F [ FASTA input ] GCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGC
[ reference std structure ] ..(.((.......((((.(.(.[..)]..).)))))).)..
[ reference ext structure ] .(((((..(...)((((.(.(.[..)]..).)))))))).)
                       ( )               
                     (       )           
[ predicted structure ] (((.((..((.(.((.(((...))).)).).))..)).)))
4MGN_B (ext) [ FASTA input ] CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCU
[ reference std structure ] ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))..
[ reference ext structure ] ((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB))))))..
                   (                       )                           
                (                                    )                 
          (         )                                                  
[ predicted structure ] ((((((((((((((...)))))))(((((((...)))))))(((((((((..))))))))).)))))))..
4MGN_C [ FASTA input ] GAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGCAGUUCC
[ reference std structure ] (((.........(((((((...(((((.....(..[[[[[[..........)]]]]]]))))).)))))))..........))).
[ reference ext structure ] (((.....(.(((((((((...(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))))))).......))).
                                              (   )                                  
[ predicted structure ] (((((..(..(.(((((((.(((((((((..((..))))))))((.((((..)))).)).))).))))))).).)..)..)))).
4MGN_D (ext) [ FASTA input ] CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCUC
[ reference std structure ] ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))...
[ reference ext structure ] ((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB))))))...
                   (                       )                            
                (                                    )                  
          (         )                                                   
[ predicted structure ] ((((((((((((((...)))))))(((((((...)))))))(((((((((..))))))))).)))))))...
4MGN_B [ FASTA input ] CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCU
[ reference std structure ] ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))..
[ reference ext structure ] ((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB))))))..
                   (                       )                           
                (                                    )                 
          (         )                                                  
[ predicted structure ] ((((((..((((.(...).)))).((((((.....))))))(((.(.(((..))).).)))..))))))..
4MGN_D [ FASTA input ] CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCUC
[ reference std structure ] ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))...
[ reference ext structure ] ((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB))))))...
                   (                       )                            
                (                                    )                  
          (         )                                                   
[ predicted structure ] ((((((..((((.(...).)))).((((((.....))))))(((.(.(((..))).).)))..))))))...
4MGN_C (ext) [ FASTA input ] GAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGCAGUUCC
[ reference std structure ] (((.........(((((((...(((((.....(..[[[[[[..........)]]]]]]))))).)))))))..........))).
[ reference ext structure ] (((.....(.(((((((((...(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))))))).......))).
                                              (   )                                  
[ predicted structure ] (((((((((.(((((((((((((((((((..((..))))))))(((((((..))))))).))))))))))))))))))..)))).


  • N/A - RNA 2D structure in Vienna format could not have been generated (most likely due to difficult to represent pseudoknot structure). Check secondary structure file for details.
  • std - standard base pair definition
  • ext - extended base pair definition

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