CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(seed)		MXScarna(seed)
MCC	0.738	>	0.632
Average MCC ± 95% Confidence Intervals	0.734 ± 0.014	>	0.616 ± 0.020
Sensitivity	0.654	>	0.530
Positive Predictive Value	0.834	>	0.756
Total TP	27340	>	22145
Total TN	24697678	<	24701145
Total FP	8212	<	9809
Total FP CONTRA	1310	>	946
Total FP INCONS	4128	<	6220
Total FP COMP	2774	>	2643
Total FN	14478	<	19673
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(seed) and MXScarna(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and MXScarna(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and MXScarna(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and MXScarna(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and MXScarna(seed)).

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Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	27340
Total TN	24697678
Total FP	8212
Total FP CONTRA	1310
Total FP INCONS	4128
Total FP COMP	2774
Total FN	14478

Total Scores
MCC	0.738
Average MCC ± 95% Confidence Intervals	0.734 ± 0.014
Sensitivity	0.654
Positive Predictive Value	0.834
Nr of predictions	416

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2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.68	0.57	0.80	43	34137	14	4	7	3	32
ASE_00002	RNaseP_arch links to Rfam database...	0.72	0.62	0.85	45	35458	13	3	5	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	60	47823	17	2	10	5	37
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	80	57879	16	4	7	5	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.81	59	47513	19	2	12	5	34
ASE_00007	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	95	59579	16	4	7	5	15
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.75	0.85	50	26047	14	2	7	5	17
ASE_00010	RNaseP_bact_b links to Rfam database...	0.81	0.78	0.83	64	49693	31	2	11	18	18
ASE_00012	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	88	73817	23	6	9	8	35
ASE_00014	RNaseP_arch links to Rfam database...	0.71	0.60	0.84	64	54209	16	3	9	4	42
ASE_00017	RNaseP_nuc links to Rfam database...	0.64	0.61	0.67	39	50982	24	3	16	5	25
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	94	80493	19	5	9	5	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	68	73837	21	8	7	6	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.79	82	104092	30	7	15	8	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.83	0.76	0.90	94	82924	24	2	8	14	30
ASE_00023	RNaseP_bact_a links to Rfam database...	0.44	0.38	0.52	48	84163	47	10	34	3	79
ASE_00025	RNaseP_nuc links to Rfam database...	0.56	0.51	0.62	36	78548	27	3	19	5	35
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	86	59581	24	4	14	6	24
ASE_00028	RNaseP_bact_b links to Rfam database...	0.83	0.75	0.90	95	84561	22	2	8	12	31
ASE_00029	RNaseP_bact_a links to Rfam database...	0.40	0.34	0.47	42	82939	51	6	41	4	80
ASE_00030	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.81	88	85383	23	5	15	3	57
ASE_00031	RNaseP_bact_a links to Rfam database...	0.43	0.37	0.51	46	86646	46	4	40	2	80
ASE_00032	RNaseP_bact_a links to Rfam database...	0.33	0.28	0.39	33	80115	55	7	45	3	85
ASE_00033	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	96	64874	16	5	5	6	25
ASE_00035	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	92	70395	21	4	9	8	26
ASE_00036	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	84	75757	19	4	10	5	48
ASE_00037	RNaseP_bact_a links to Rfam database...	0.90	0.88	0.92	97	59234	14	4	5	5	13
ASE_00038	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	53546	14	4	5	5	28
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	97	78896	16	4	6	6	36
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	20	4	11	5	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	87	89993	24	4	16	4	58
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.91	92	54514	14	4	5	5	13
ASE_00045	RNaseP_bact_b links to Rfam database...	0.82	0.81	0.82	65	47199	26	2	12	12	15
ASE_00046	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.81	78	50307	23	3	15	5	25
ASE_00047	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	84	74206	19	5	10	4	46
ASE_00052	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	61323	27	5	16	6	31
ASE_00053	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	85	79301	20	7	8	5	48
ASE_00057	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	86	82110	24	5	14	5	48
ASE_00064	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	70	45371	15	4	6	5	19
ASE_00066	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	89	72291	14	5	5	4	41
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	20	4	14	2	38
ASE_00069	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	89	82927	18	4	8	6	51
ASE_00074	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	67788	14	4	5	5	20
ASE_00075	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.83	85	108709	27	6	11	10	77
ASE_00076	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	68	68183	20	3	11	6	50
ASE_00077	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	71	45067	16	5	7	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	73	42993	12	3	2	7	10
ASE_00079	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	63	55530	24	4	14	6	37
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.38	0.58	47	71550	40	4	30	6	76
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	73	49688	15	3	6	6	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	66	70423	20	3	8	9	50
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	72	62399	16	4	6	6	38
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	71	53546	16	4	7	5	28
ASE_00087	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.88	72	88328	16	4	6	6	72
ASE_00090	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	55529	15	4	5	6	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	67	63464	21	6	9	6	46
ASE_00096	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	63464	24	3	15	6	51
ASE_00099	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	64512	14	4	5	5	21
ASE_00100	RNaseP_nuc links to Rfam database...	0.59	0.51	0.67	39	82157	24	3	16	5	37
ASE_00102	RNaseP_bact_a links to Rfam database...	0.59	0.47	0.74	78	117750	32	5	22	5	88
ASE_00104	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	98	64153	15	4	6	5	21
ASE_00105	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	56	64178	32	8	19	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	98	73045	15	4	6	5	29
ASE_00108	RNaseP_nuc links to Rfam database...	0.64	0.62	0.67	39	46913	24	3	16	5	24
ASE_00111	RNaseP_nuc links to Rfam database...	0.82	0.81	0.84	46	50031	13	4	5	4	11
ASE_00112	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.50	42	75382	44	4	38	2	74
ASE_00114	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.68	50	45377	39	1	23	15	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	71	54535	14	4	5	5	30
ASE_00116	RNaseP_arch links to Rfam database...	0.77	0.71	0.84	47	31570	13	3	6	4	19
ASE_00118	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	66	60648	18	4	8	6	36
ASE_00119	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	59	62765	15	5	6	4	49
ASE_00120	RNaseP_arch links to Rfam database...	0.78	0.69	0.88	65	46897	14	3	6	5	29
ASE_00121	RNaseP_arch links to Rfam database...	0.76	0.68	0.84	63	45075	16	4	8	4	29
ASE_00122	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	43284	14	3	6	5	16
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	16	4	7	5	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	54	39275	16	4	7	5	34
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	73	53219	14	4	5	5	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.89	73	62753	14	4	5	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	39279	16	4	7	5	35
ASE_00132	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.87	71	50321	16	6	5	5	24
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	69	50321	18	4	9	5	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	6	18	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	72	48123	15	4	6	5	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	68	48443	10	3	2	5	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	68	40392	15	5	5	5	13
ASE_00139	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	67	54206	17	4	8	5	37
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	67	70794	21	9	6	6	58
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	94	67056	17	4	7	6	28
ASE_00145	RNaseP_arch links to Rfam database...	0.74	0.62	0.88	69	70047	13	3	6	4	42
ASE_00146	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	95	70770	16	4	7	5	29
ASE_00148	RNaseP_arch links to Rfam database...	0.59	0.42	0.84	64	112499	16	3	9	4	90
ASE_00151	RNaseP_bact_a links to Rfam database...	0.83	0.83	0.84	81	51906	21	8	8	5	17
ASE_00153	RNaseP_nuc links to Rfam database...	0.63	0.55	0.71	40	57574	20	3	13	4	33
ASE_00154	RNaseP_arch links to Rfam database...	0.70	0.60	0.82	64	65263	18	3	11	4	43
ASE_00155	RNaseP_arch links to Rfam database...	0.66	0.49	0.88	69	93450	13	3	6	4	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.84	0.83	0.85	72	53543	26	1	12	13	15
ASE_00163	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	72	53219	15	5	5	5	21
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	68	52901	12	3	3	6	33
ASE_00168	RNaseP_nuc links to Rfam database...	0.64	0.61	0.67	39	60668	24	3	16	5	25
ASE_00169	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	68	57209	19	4	10	5	39
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	68	48746	19	5	9	5	25
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	71	48436	15	4	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	72	58914	15	5	5	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	65	60993	22	4	13	5	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	68	59948	20	5	10	5	39
ASE_00176	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	66	59951	19	5	9	5	44
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	67	44175	14	5	6	3	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	73	51277	15	5	5	5	27
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.80	66	57548	22	7	9	6	40
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	15	4	6	5	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.88	73	61342	15	5	5	5	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	14	3	6	5	29
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	69	73457	15	5	5	5	59
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	26	4	16	6	46
ASE_00187	RNaseP_arch links to Rfam database...	0.67	0.54	0.83	62	68560	17	4	9	4	53
ASE_00189	RNaseP_bact_b links to Rfam database...	0.80	0.76	0.84	78	63097	27	2	13	12	24
ASE_00190	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.85	62	45378	20	2	9	9	28
ASE_00191	RNaseP_arch links to Rfam database...	0.80	0.75	0.85	46	29592	13	2	6	5	15
ASE_00192	RNaseP_bact_b links to Rfam database...	0.53	0.44	0.64	59	84574	40	3	30	7	74
ASE_00194	RNaseP_bact_b links to Rfam database...	0.75	0.66	0.86	78	73445	25	2	11	12	41
ASE_00196	RNaseP_arch links to Rfam database...	0.74	0.69	0.80	52	31561	18	2	11	5	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	86	89148	24	4	15	5	59
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	52568	15	4	5	6	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	46587	14	4	5	5	27
ASE_00204	RNaseP_bact_b links to Rfam database...	0.77	0.69	0.86	77	67806	26	3	10	13	35
ASE_00205	RNaseP_arch links to Rfam database...	0.79	0.70	0.89	63	45985	13	4	4	5	27
ASE_00209	RNaseP_arch links to Rfam database...	0.81	0.75	0.88	66	42996	13	3	6	4	22
ASE_00210	RNaseP_arch links to Rfam database...	0.68	0.65	0.71	42	27202	24	2	15	7	23
ASE_00212	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	85	93860	21	4	12	5	63
ASE_00213	RNaseP_arch links to Rfam database...	0.78	0.74	0.83	49	27202	17	2	8	7	17
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.88	72	56198	16	5	5	6	31
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	48448	21	4	15	2	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	70	39268	8	2	0	6	12
ASE_00217	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.89	74	40387	15	4	5	6	16
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	95	64514	16	4	7	5	22
ASE_00222	RNaseP_arch links to Rfam database...	0.62	0.44	0.88	69	112023	13	3	6	4	88
ASE_00227	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.69	67	78906	33	3	27	3	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	65	46899	13	3	4	6	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.93	70	42411	10	2	3	5	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	60	47823	17	2	10	5	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	70	38431	7	2	0	5	14
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	68	75383	21	9	6	6	61
ASE_00237	RNaseP_nuc links to Rfam database...	0.83	0.82	0.84	46	45698	13	4	5	4	10
ASE_00238	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	64179	24	7	11	6	50
ASE_00240	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	59	46586	25	3	17	5	34
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	72	43874	15	4	6	5	15
ASE_00242	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.92	97	60969	15	4	5	6	15
ASE_00245	RNaseP_nuc links to Rfam database...	0.60	0.42	0.85	33	55239	11	1	5	5	45
ASE_00246	RNaseP_nuc links to Rfam database...	0.64	0.60	0.69	40	48147	23	3	15	5	27
ASE_00247	RNaseP_nuc links to Rfam database...	0.64	0.61	0.67	39	54227	24	3	16	5	25
ASE_00248	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	97	62375	15	4	5	6	17
ASE_00250	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.86	92	78896	20	5	10	5	39
ASE_00252	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	86	115340	23	5	9	9	82
ASE_00254	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	68	36785	9	2	1	6	14
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	77	74588	31	5	21	5	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	67	50959	19	5	9	5	30
ASE_00258	RNaseP_nuc links to Rfam database...	0.82	0.69	0.97	37	26758	6	1	0	5	17
ASE_00259	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	75	73050	33	2	26	5	46
ASE_00263	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	72	70418	15	5	5	5	48
ASE_00264	RNaseP_nuc links to Rfam database...	0.62	0.47	0.81	47	49083	15	2	9	4	53
ASE_00267	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	45069	14	3	6	5	16
ASE_00270	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.77	57	72316	22	3	14	5	71
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	65	55530	21	6	10	5	38
ASE_00277	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	62	48129	19	8	6	5	29
ASE_00279	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	70	53220	16	4	7	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	68	51921	19	5	9	5	30
ASE_00281	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	71	44470	15	4	6	5	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	73	77732	15	5	5	5	54
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	72	61694	15	4	6	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	72	58228	16	6	5	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	72	68924	15	4	6	5	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	71	46584	15	4	6	5	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	23	3	15	5	39
ASE_00288	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	72	45973	16	5	6	5	21
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	85	100921	24	5	14	5	72
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	97	81703	16	4	6	6	41
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	97	114373	16	4	7	5	74
ASE_00295	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.87	91	73815	19	4	10	5	40
ASE_00296	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	91698	20	5	10	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	63	52896	21	6	10	5	35
ASE_00298	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	72	67446	15	6	4	5	41
ASE_00299	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	52	49370	34	5	28	1	48
ASE_00303	RNaseP_nuc links to Rfam database...	0.33	0.25	0.44	24	67842	38	10	20	8	71
ASE_00305	RNaseP_bact_b links to Rfam database...	0.85	0.84	0.86	71	54532	27	1	11	15	14
ASE_00313	RNaseP_nuc links to Rfam database...	0.59	0.45	0.77	40	62429	19	4	8	7	49
ASE_00316	RNaseP_nuc links to Rfam database...	0.50	0.33	0.78	32	107839	16	2	7	7	66
ASE_00318	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.90	87	80103	25	2	8	15	31
ASE_00321	RNaseP_bact_b links to Rfam database...	0.87	0.84	0.89	74	54532	24	1	8	15	14
ASE_00327	RNaseP_nuc links to Rfam database...	0.65	0.51	0.83	45	57237	17	2	7	8	44
ASE_00328	RNaseP_bact_b links to Rfam database...	0.87	0.83	0.90	93	72668	24	2	8	14	19
ASE_00329	RNaseP_nuc links to Rfam database...	0.57	0.46	0.71	29	40714	29	10	2	17	34
ASE_00330	RNaseP_nuc links to Rfam database...	0.68	0.54	0.84	49	56222	13	3	6	4	41
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	99	81702	14	4	5	5	39
ASE_00335	RNaseP_bact_b links to Rfam database...	0.85	0.79	0.90	92	75364	26	2	8	16	24
ASE_00337	RNaseP_nuc links to Rfam database...	0.66	0.56	0.77	40	39288	23	2	10	11	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.59	0.43	0.81	42	66378	13	4	6	3	56
ASE_00339	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.57	56	80101	45	15	28	2	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	62	45986	15	2	6	7	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	99	62373	14	4	5	5	16
ASE_00343	RNaseP_bact_a links to Rfam database...	0.31	0.27	0.36	31	83349	63	6	50	7	82
ASE_00346	RNaseP_arch links to Rfam database...	0.60	0.53	0.68	51	48130	29	3	21	5	46
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	73	57887	15	5	5	5	34
ASE_00359	RNaseP_arch links to Rfam database...	0.68	0.56	0.82	45	42723	15	3	7	5	35
ASE_00360	RNaseP_arch links to Rfam database...	0.78	0.72	0.84	47	29347	13	3	6	4	18
ASE_00361	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	72	75384	15	4	6	5	55
ASE_00362	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.89	72	48124	16	4	5	7	19
ASE_00363	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.84	69	51278	18	3	10	5	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	69	54203	18	5	8	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.84	70	58570	18	6	7	5	28
ASE_00367	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.89	73	42989	15	4	5	6	13
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	70	41825	16	3	7	6	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	71	51922	16	4	6	6	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44770	15	4	5	6	17
ASE_00375	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.89	73	60296	15	3	6	6	37
ASE_00376	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.87	71	56871	17	4	7	6	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	70	57547	18	5	8	5	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	72	45975	16	4	5	7	17
ASE_00380	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	68	54865	18	4	9	5	31
ASE_00382	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41824	16	3	6	7	12
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	71	48434	17	4	7	6	21
ASE_00385	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.75	58	41828	24	4	15	5	23
ASE_00386	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	73	50321	14	4	5	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	64	55865	21	3	13	5	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	69	45673	18	4	7	7	20
ASE_00390	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.86	70	42114	17	3	8	6	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	67	47813	21	4	11	6	26
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	66	46894	15	3	8	4	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41535	15	4	5	6	12
ASE_00396	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.86	70	41535	16	5	6	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	70	55864	17	4	7	6	34
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	4	5	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	68	76950	16	5	5	6	58
ASE_00402	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	73	42404	15	3	6	6	12
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00404	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	71	42991	15	4	5	6	14
ASE_00406	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	73	48746	14	4	5	5	21
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	61	49370	29	10	14	5	28
ASE_00412	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	60	58228	28	7	16	5	45
ASE_00413	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	64	44472	22	7	8	7	17
ASE_00414	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	52	46282	27	8	18	1	43
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	52	54869	29	3	22	4	51
ASE_00416	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	77313	22	6	11	5	36
ASE_00417	RNaseP_arch links to Rfam database...	0.77	0.68	0.87	68	54537	14	3	7	4	32
ASE_00418	RNaseP_arch links to Rfam database...	0.71	0.61	0.82	46	38725	14	3	7	4	29
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	68	54864	19	7	7	5	35
ASE_00420	RNaseP_nuc links to Rfam database...	0.72	0.57	0.90	36	43325	7	1	3	3	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	67	46895	13	1	8	4	27
ASE_00423	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	83	56851	25	4	15	6	26
ASE_00426	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	50	60984	42	9	32	1	58
ASE_00427	RNaseP_nuc links to Rfam database...	0.85	0.78	0.92	36	40716	9	0	3	6	10
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	91	76528	22	6	11	5	34
ASE_00430	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	69	46896	11	2	4	5	28
ASE_00431	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	52	46276	33	12	20	1	43
ASE_00434	RNaseP_bact_b links to Rfam database...	0.74	0.71	0.78	78	68165	36	2	20	14	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	72	79295	39	4	30	5	63
ASE_00438	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.71	58	65984	27	5	19	3	58
ASE_00441	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	64	64185	18	4	8	6	48
ASE_00443	RNaseP_nuc links to Rfam database...	0.66	0.52	0.84	26	26765	18	2	3	13	24
ASE_00447	RNaseP_bact_a links to Rfam database...	0.88	0.84	0.91	98	60270	15	4	6	5	18
ASE_00448	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	94	64154	18	4	9	5	18
ASE_00451	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	98	70768	15	4	6	5	27
ASE_00454	RNaseP_nuc links to Rfam database...	0.63	0.48	0.83	30	43329	9	1	5	3	33
CRW_00013	Intron_gpI links to Rfam database...	0.41	0.25	0.66	29	103696	18	0	15	3	86
CRW_00016	Intron_gpI links to Rfam database...	0.40	0.24	0.66	29	77377	17	0	15	2	91
CRW_00610	Intron_gpI links to Rfam database...	0.54	0.38	0.76	31	36274	12	1	9	2	50
CRW_00613	Intron_gpI links to Rfam database...	0.40	0.29	0.55	23	34938	22	1	18	3	55
CRW_00614	Intron_gpI links to Rfam database...	0.49	0.39	0.63	22	121736	16	2	11	3	35
CRW_00618	Intron_gpI links to Rfam database...	0.38	0.28	0.52	17	56247	16	2	14	0	44
CRW_00619	Intron_gpI links to Rfam database...	0.46	0.29	0.72	21	164996	11	1	7	3	52
CRW_00620	Intron_gpI links to Rfam database...	0.36	0.25	0.52	16	150944	27	0	15	12	47
CRW_00621	Intron_gpI links to Rfam database...	0.35	0.25	0.49	18	153144	20	3	16	1	53
CRW_00623	Intron_gpI links to Rfam database...	0.43	0.28	0.68	23	129761	14	2	9	3	60
CRW_00633	Intron_gpI links to Rfam database...	0.38	0.24	0.61	25	63505	16	2	14	0	81
CRW_00634	Intron_gpI links to Rfam database...	0.31	0.19	0.50	18	64584	24	1	17	6	76
CRW_00670	Intron_gpI links to Rfam database...	0.51	0.31	0.84	37	70081	8	0	7	1	83
CRW_00671	Intron_gpI links to Rfam database...	0.52	0.32	0.84	37	62791	8	0	7	1	80
CRW_00672	Intron_gpI links to Rfam database...	0.52	0.32	0.84	36	72347	10	0	7	3	75
CRW_00674	Intron_gpI links to Rfam database...	0.25	0.15	0.45	18	83396	25	6	16	3	106
CRW_00676	Intron_gpI links to Rfam database...	0.29	0.16	0.53	18	93494	24	0	16	8	97
CRW_00692	Intron_gpI links to Rfam database...	0.32	0.20	0.53	18	68601	24	0	16	8	72
PDB_00827	Intron_gpI links to Rfam database...	0.50	0.37	0.68	30	26984	14	2	12	0	51
PDB_00919	RNaseP_bact_a links to Rfam database...	0.39	0.34	0.44	35	44174	47	2	42	3	68
RFA_00597	Telomerase-vert links to Rfam database...	0.75	0.72	0.80	78	97805	27	2	18	7	31
RFA_00598	Telomerase-vert links to Rfam database...	0.71	0.67	0.75	68	84575	39	2	21	16	33
RFA_00599	Telomerase-vert links to Rfam database...	0.88	0.86	0.90	95	101370	21	3	7	11	16
RFA_00600	Telomerase-vert links to Rfam database...	0.81	0.76	0.86	76	120207	25	2	10	13	24
RFA_00601	Telomerase-vert links to Rfam database...	0.87	0.84	0.89	96	99127	25	3	9	13	18
RFA_00602	Telomerase-vert links to Rfam database...	0.82	0.77	0.87	89	101373	22	3	10	9	27
RFA_00606	Telomerase-cil links to Rfam database...	0.91	0.82	1.00	32	21289	0	0	0	0	7
RFA_00620	Telomerase-cil links to Rfam database...	0.89	0.79	1.00	31	21914	0	0	0	0	8
RFA_00621	RNase_MRP links to Rfam database...	0.39	0.29	0.54	22	46319	25	2	17	6	54
RFA_00623	RNase_MRP links to Rfam database...	0.41	0.28	0.59	22	43919	21	2	13	6	56
RFA_00624	RNase_MRP links to Rfam database...	0.67	0.61	0.74	37	30085	17	1	12	4	24
RFA_00626	rne5 links to Rfam database...	0.96	0.92	1.00	80	56536	7	0	0	7	7
RFA_00627	rne5 links to Rfam database...	0.96	0.93	1.00	81	56872	12	0	0	12	6
RFA_00628	rne5 links to Rfam database...	0.96	0.93	1.00	80	57211	12	0	0	12	6
RFA_00630	rne5 links to Rfam database...	0.92	0.87	0.97	76	56875	17	0	2	15	11
RFA_00639	7SK links to Rfam database...	0.71	0.66	0.78	57	54542	18	2	14	2	30
RFA_00805	RNAIII links to Rfam database...	0.64	0.49	0.84	73	133299	16	0	14	2	77
RFA_00814	R2_retro_el links to Rfam database...	0.98	0.95	1.00	39	25161	5	0	0	5	2
RFA_00815	R2_retro_el links to Rfam database...	0.98	0.95	1.00	39	24492	6	0	0	6	2
RFA_00816	R2_retro_el links to Rfam database...	0.98	0.95	1.00	39	23181	6	0	0	6	2
RFA_00817	R2_retro_el links to Rfam database...	0.98	0.95	1.00	39	21906	4	0	0	4	2
RFA_00818	R2_retro_el links to Rfam database...	0.98	0.95	1.00	39	20262	3	0	0	3	2
RFA_00819	R2_retro_el links to Rfam database...	0.98	0.95	1.00	39	27927	6	0	0	6	2
RFA_00820	bicoid_3 links to Rfam database...	0.86	0.83	0.90	132	151379	33	1	13	19	28
RFA_00830	bicoid_3 links to Rfam database...	0.75	0.73	0.78	112	152485	44	2	29	13	42
SRP_00002	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	95	45053	9	0	2	7	7
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.92	0.99	93	45659	10	0	1	9	8
SRP_00009	Plant_SRP links to Rfam database...	0.88	0.84	0.92	86	46572	17	0	7	10	16
SRP_00011	Plant_SRP links to Rfam database...	0.82	0.79	0.86	82	46265	21	0	13	8	22
SRP_00012	Plant_SRP links to Rfam database...	0.87	0.83	0.90	84	46267	20	0	9	11	17
SRP_00015	Plant_SRP links to Rfam database...	0.87	0.84	0.91	83	46269	20	0	8	12	16
SRP_00016	Archaea_SRP links to Rfam database...	0.92	0.87	0.98	95	47798	9	0	2	7	14
SRP_00018	Fungi_SRP links to Rfam database...	0.68	0.56	0.83	45	38449	16	2	7	7	36
SRP_00019	Fungi_SRP links to Rfam database...	0.73	0.55	0.96	50	35994	8	1	1	6	41
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.97	0.98	96	44752	9	0	2	7	3
SRP_00053	Metazoa_SRP links to Rfam database...	0.92	0.91	0.92	86	45057	17	0	7	10	8
SRP_00060	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	95	44454	8	0	2	6	5
SRP_00061	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	95	44753	9	0	2	7	5
SRP_00066	Metazoa_SRP links to Rfam database...	0.94	0.91	0.98	91	45358	15	0	2	13	9
SRP_00069	Fungi_SRP links to Rfam database...	0.69	0.56	0.84	48	34396	13	2	7	4	37
SRP_00070	Fungi_SRP links to Rfam database...	0.59	0.40	0.87	48	126701	14	0	7	7	73
SRP_00073	Fungi_SRP links to Rfam database...	0.62	0.54	0.72	38	39007	21	4	11	6	33
SRP_00079	Plant_SRP links to Rfam database...	0.76	0.73	0.80	64	41825	30	0	16	14	24
SRP_00085	Plant_SRP links to Rfam database...	0.87	0.82	0.91	83	45360	20	0	8	12	18
SRP_00086	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	96	44155	9	0	2	7	4
SRP_00087	Fungi_SRP links to Rfam database...	0.41	0.36	0.46	21	37355	32	8	17	7	37
SRP_00091	Fungi_SRP links to Rfam database...	0.60	0.45	0.80	43	52921	16	2	9	5	52
SRP_00099	Plant_SRP links to Rfam database...	0.62	0.62	0.63	59	44756	41	3	32	6	36
SRP_00102	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	96	44453	9	0	2	7	5
SRP_00103	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	95	45354	10	0	2	8	7
SRP_00104	Fungi_SRP links to Rfam database...	0.51	0.45	0.57	31	34399	28	8	15	5	38
SRP_00117	Metazoa_SRP links to Rfam database...	0.95	0.92	0.99	94	45356	10	0	1	9	8
SRP_00123	Metazoa_SRP links to Rfam database...	0.80	0.76	0.85	69	36504	20	1	11	8	22
SRP_00124	Metazoa_SRP links to Rfam database...	0.71	0.68	0.74	58	37050	32	3	17	12	27
SRP_00127	Fungi_SRP links to Rfam database...	0.65	0.44	0.98	52	72337	6	0	1	5	67
SRP_00130	Archaea_SRP links to Rfam database...	0.79	0.74	0.84	72	49684	29	1	13	15	25
SRP_00136	Fungi_SRP links to Rfam database...	0.60	0.54	0.68	38	44197	24	7	11	6	33
SRP_00142	Archaea_SRP links to Rfam database...	0.92	0.91	0.93	85	45965	17	0	6	11	8
SRP_00143	Archaea_SRP links to Rfam database...	0.85	0.81	0.88	82	49677	24	0	11	13	19
SRP_00144	Archaea_SRP links to Rfam database...	0.92	0.91	0.93	86	46573	18	0	6	12	8
SRP_00148	Fungi_SRP links to Rfam database...	0.71	0.55	0.92	48	50034	10	0	4	6	39
SRP_00152	Plant_SRP links to Rfam database...	0.89	0.83	0.95	86	45662	17	0	5	12	17
SRP_00153	Plant_SRP links to Rfam database...	0.89	0.83	0.95	89	46877	14	0	5	9	18
SRP_00157	Fungi_SRP links to Rfam database...	0.65	0.53	0.79	38	44205	21	2	8	11	34
SRP_00158	Fungi_SRP links to Rfam database...	0.53	0.37	0.78	42	124197	17	4	8	5	73
SRP_00160	Fungi_SRP links to Rfam database...	0.59	0.38	0.91	50	86265	10	1	4	5	80
SRP_00171	Metazoa_SRP links to Rfam database...	0.98	0.97	1.00	85	45366	21	0	0	21	3
SRP_00175	Fungi_SRP links to Rfam database...	0.57	0.43	0.77	36	44504	21	0	11	10	48
SRP_00178	Plant_SRP links to Rfam database...	0.91	0.86	0.96	88	45661	15	0	4	11	14
SRP_00179	Plant_SRP links to Rfam database...	0.90	0.85	0.96	89	45963	14	0	4	10	16
SRP_00181	Plant_SRP links to Rfam database...	0.85	0.81	0.89	83	45963	21	0	10	11	19
SRP_00182	Plant_SRP links to Rfam database...	0.88	0.84	0.91	85	45963	17	0	8	9	16
SRP_00184	Plant_SRP links to Rfam database...	0.84	0.80	0.89	80	45966	23	0	10	13	20
SRP_00188	Plant_SRP links to Rfam database...	0.86	0.82	0.90	65	31053	14	0	7	7	14
SRP_00197	Archaea_SRP links to Rfam database...	0.92	0.88	0.96	89	49362	17	1	3	13	12
SRP_00198	Archaea_SRP links to Rfam database...	0.91	0.87	0.96	90	50946	16	1	3	12	13
SRP_00199	Archaea_SRP links to Rfam database...	0.89	0.86	0.93	90	50943	17	1	6	10	15
SRP_00201	Archaea_SRP links to Rfam database...	0.92	0.88	0.95	98	47792	7	2	3	2	13
SRP_00202	Archaea_SRP links to Rfam database...	0.88	0.81	0.95	95	54185	10	1	4	5	22
SRP_00203	Archaea_SRP links to Rfam database...	0.81	0.78	0.84	82	48730	21	1	15	5	23
SRP_00204	Archaea_SRP links to Rfam database...	0.91	0.87	0.95	89	49047	16	0	5	11	13
SRP_00206	Archaea_SRP links to Rfam database...	0.95	0.92	0.98	99	47794	7	0	2	5	9
SRP_00208	Archaea_SRP links to Rfam database...	0.93	0.89	0.97	90	46572	14	0	3	11	11
SRP_00228	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	91	45358	14	0	2	12	4
SRP_00230	Fungi_SRP links to Rfam database...	0.73	0.54	0.98	49	39571	8	0	1	7	41
SRP_00239	Plant_SRP links to Rfam database...	0.55	0.56	0.55	52	50308	51	5	38	8	41
SRP_00240	Plant_SRP links to Rfam database...	0.81	0.77	0.84	79	48111	23	2	13	8	23
SRP_00241	Plant_SRP links to Rfam database...	0.55	0.56	0.55	46	45972	53	9	29	15	36
SRP_00247	Metazoa_SRP links to Rfam database...	0.56	0.59	0.53	51	47182	52	7	38	7	36
SRP_00252	Metazoa_SRP links to Rfam database...	0.64	0.66	0.63	59	49047	47	6	29	12	30
SRP_00253	Metazoa_SRP links to Rfam database...	0.65	0.66	0.64	59	49363	45	5	28	12	31
SRP_00254	Fungi_SRP links to Rfam database...	0.34	0.31	0.37	19	32334	39	6	26	7	42
SRP_00255	Archaea_SRP links to Rfam database...	0.79	0.77	0.81	72	47497	31	1	16	14	22
SRP_00257	Metazoa_SRP links to Rfam database...	0.53	0.48	0.58	52	50950	42	5	33	4	56
SRP_00260	Metazoa_SRP links to Rfam database...	0.55	0.53	0.58	53	47804	46	6	32	8	47
SRP_00265	Fungi_SRP links to Rfam database...	0.66	0.56	0.77	41	41275	20	2	10	8	32
SRP_00267	Metazoa_SRP links to Rfam database...	0.95	0.95	0.96	91	44456	12	0	4	8	5
SRP_00276	Archaea_SRP links to Rfam database...	0.92	0.87	0.97	96	50622	9	1	2	6	14
SRP_00278	Archaea_SRP links to Rfam database...	0.85	0.81	0.89	85	45961	15	1	9	5	20
SRP_00282	Metazoa_SRP links to Rfam database...	0.34	0.41	0.28	26	43273	77	22	44	11	37
SRP_00286	Fungi_SRP links to Rfam database...	0.52	0.30	0.91	52	136969	8	0	5	3	122
SRP_00287	Fungi_SRP links to Rfam database...	0.57	0.33	0.96	54	141722	6	0	2	4	108
SRP_00290	Fungi_SRP links to Rfam database...	0.53	0.34	0.84	46	100521	14	0	9	5	89
SRP_00292	Fungi_SRP links to Rfam database...	0.52	0.29	0.91	51	137494	9	0	5	4	122
SRP_00294	Fungi_SRP links to Rfam database...	0.58	0.34	1.00	57	129229	5	0	0	5	110
SRP_00299	Metazoa_SRP links to Rfam database...	0.92	0.90	0.95	89	44159	14	0	5	9	10
SRP_00300	Metazoa_SRP links to Rfam database...	0.95	0.95	0.96	89	44160	16	0	4	12	5
SRP_00301	Fungi_SRP links to Rfam database...	0.72	0.53	0.96	46	32592	10	0	2	8	40
SRP_00302	Fungi_SRP links to Rfam database...	0.55	0.43	0.71	35	41567	23	0	14	9	46
SRP_00317	Metazoa_SRP links to Rfam database...	0.95	0.94	0.96	92	45054	13	0	4	9	6
SRP_00321	Archaea_SRP links to Rfam database...	0.87	0.81	0.94	88	47492	14	1	5	8	20
SRP_00322	Archaea_SRP links to Rfam database...	0.86	0.81	0.93	88	48421	14	0	7	7	21
SRP_00323	Archaea_SRP links to Rfam database...	0.91	0.85	0.97	91	47184	13	0	3	10	16
SRP_00328	Metazoa_SRP links to Rfam database...	0.61	0.59	0.64	50	39543	34	5	23	6	35
SRP_00329	Metazoa_SRP links to Rfam database...	0.75	0.72	0.78	61	39825	29	2	15	12	24
SRP_00330	Archaea_SRP links to Rfam database...	0.85	0.82	0.89	78	49998	24	1	9	14	17
SRP_00331	Metazoa_SRP links to Rfam database...	0.65	0.61	0.69	53	37598	34	2	22	10	34
SRP_00332	Archaea_SRP links to Rfam database...	0.93	0.89	0.98	94	50307	9	0	2	7	12
SRP_00339	Archaea_SRP links to Rfam database...	0.85	0.82	0.89	77	44464	21	1	9	11	17
SRP_00340	Metazoa_SRP links to Rfam database...	0.53	0.52	0.54	43	41249	51	6	30	15	39
SRP_00347	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	89	46572	16	0	4	12	7
SRP_00361	Plant_SRP links to Rfam database...	0.75	0.74	0.76	67	41817	32	4	17	11	23
SRP_00368	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	93	43861	12	0	2	10	5
SRP_00371	Fungi_SRP links to Rfam database...	0.66	0.54	0.81	44	36261	18	0	10	8	38
SRP_00382	Fungi_SRP links to Rfam database...	0.57	0.33	1.00	56	141722	4	0	0	4	114
TMR_00173	tmRNA links to Rfam database...	0.37	0.31	0.45	13	42166	39	2	14	23	29
TMR_00357	tmRNA links to Rfam database...	0.52	0.45	0.60	41	82960	33	9	18	6	51
TMR_00601	tmRNA links to Rfam database...	0.65	0.62	0.68	26	58958	50	2	10	38	16
TMR_00603	tmRNA links to Rfam database...	0.72	0.67	0.76	29	60340	43	2	7	34	14
TMR_00611	tmRNA links to Rfam database...	0.68	0.60	0.78	61	61347	23	4	13	6	41
TMR_00696	tmRNA links to Rfam database...	0.56	0.44	0.70	50	85007	29	1	20	8	64

^top

Performance of MXScarna(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

Total Base Pair Counts
Total TP	22145
Total TN	24701145
Total FP	9809
Total FP CONTRA	946
Total FP INCONS	6220
Total FP COMP	2643
Total FN	19673

Total Scores
MCC	0.632
Average MCC ± 95% Confidence Intervals	0.616 ± 0.020
Sensitivity	0.530
Positive Predictive Value	0.756
Nr of predictions	416

^top

2. Individual counts for MXScarna(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.67	0.51	0.88	38	34148	6	0	5	1	37
ASE_00002	RNaseP_arch links to Rfam database...	0.68	0.53	0.87	39	35466	7	1	5	1	34
ASE_00004	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.65	40	47833	24	4	18	2	57
ASE_00005	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	67	57897	8	2	4	2	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.51	0.41	0.63	38	47526	25	3	19	3	55
ASE_00007	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	83	59593	12	4	5	3	27
ASE_00009	RNaseP_arch links to Rfam database...	0.68	0.57	0.81	38	26059	10	1	8	1	29
ASE_00010	RNaseP_bact_b links to Rfam database...	0.70	0.63	0.76	52	49702	27	4	12	11	30
ASE_00012	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	68	73829	26	4	19	3	55
ASE_00014	RNaseP_arch links to Rfam database...	0.67	0.52	0.87	55	54222	9	0	8	1	51
ASE_00017	RNaseP_nuc links to Rfam database...	0.49	0.41	0.59	26	50996	36	2	16	18	38
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.91	86	80507	11	2	6	3	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.71	45	73857	21	6	12	3	81
ASE_00021	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.66	57	104110	34	4	25	5	103
ASE_00022	RNaseP_bact_b links to Rfam database...	0.66	0.58	0.75	72	82932	31	5	19	7	52
ASE_00023	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	25	84188	47	2	40	5	102
ASE_00025	RNaseP_nuc links to Rfam database...	0.53	0.42	0.67	30	78561	28	0	15	13	41
ASE_00026	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	72	59600	18	5	8	5	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.60	0.78	76	84569	29	5	16	8	50
ASE_00029	RNaseP_bact_a links to Rfam database...	0.24	0.18	0.32	22	82960	50	6	40	4	100
ASE_00030	RNaseP_bact_a links to Rfam database...	0.65	0.46	0.91	67	85417	9	3	4	2	78
ASE_00031	RNaseP_bact_a links to Rfam database...	0.31	0.23	0.43	29	86668	41	3	36	2	97
ASE_00032	RNaseP_bact_a links to Rfam database...	0.20	0.15	0.28	18	80135	55	0	47	8	100
ASE_00033	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	81	64889	14	3	7	4	40
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.86	78	70409	18	3	10	5	40
ASE_00036	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.73	66	75764	28	3	22	3	66
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.94	87	59247	9	2	4	3	23
ASE_00038	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	57	53560	14	1	10	3	44
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	78	78906	22	4	15	3	55
ASE_00041	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	78	57543	12	2	7	3	30
ASE_00042	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.87	76	90013	14	1	10	3	69
ASE_00044	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	82	54527	9	3	3	3	23
ASE_00045	RNaseP_bact_b links to Rfam database...	0.64	0.58	0.72	46	47214	28	4	14	10	34
ASE_00046	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	68	50325	13	1	9	3	35
ASE_00047	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.92	78	74220	8	2	5	1	52
ASE_00052	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	62	61342	24	3	18	3	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	63	79318	24	4	16	4	70
ASE_00057	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	77	82127	14	4	7	3	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	63	45384	7	1	3	3	26
ASE_00066	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	74	72306	11	3	7	1	56
ASE_00068	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.88	44	37625	8	1	5	2	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	69	82941	22	3	15	4	71
ASE_00074	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	83	67808	9	2	3	4	36
ASE_00075	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	56	108730	31	3	22	6	106
ASE_00076	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.55	38	68196	33	2	29	2	80
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	60	45079	14	4	7	3	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	60	43002	13	2	7	4	23
ASE_00079	RNaseP_bact_a links to Rfam database...	0.41	0.33	0.52	33	55548	32	1	29	2	67
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.30	0.47	37	71552	44	6	36	2	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	65	49695	13	2	8	3	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.50	28	70444	31	1	27	3	88
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.89	62	62411	11	1	7	3	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.71	0.59	0.85	58	53560	14	1	9	4	41
ASE_00087	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	30	88345	36	0	35	1	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	55	55543	16	2	11	3	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.73	49	63479	21	2	16	3	64
ASE_00096	RNaseP_bact_a links to Rfam database...	0.41	0.30	0.55	35	63482	31	1	28	2	80
ASE_00099	RNaseP_bact_a links to Rfam database...	0.83	0.73	0.96	87	64529	7	2	2	3	33
ASE_00100	RNaseP_nuc links to Rfam database...	0.54	0.41	0.70	31	82171	27	1	12	14	45
ASE_00102	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.63	57	117765	36	5	28	3	109
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.93	87	64167	10	2	5	3	32
ASE_00105	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.70	42	64201	21	5	13	3	69
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.91	86	73058	12	2	7	3	41
ASE_00108	RNaseP_nuc links to Rfam database...	0.54	0.43	0.68	27	46931	25	0	13	12	36
ASE_00111	RNaseP_nuc links to Rfam database...	0.68	0.54	0.86	31	50050	23	0	5	18	26
ASE_00112	RNaseP_bact_a links to Rfam database...	0.32	0.25	0.42	29	75397	42	7	33	2	87
ASE_00114	RNaseP_bact_b links to Rfam database...	0.50	0.45	0.55	35	45387	40	4	25	11	42
ASE_00115	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	43	54552	23	1	19	3	58
ASE_00116	RNaseP_arch links to Rfam database...	0.35	0.27	0.46	18	31587	22	1	20	1	48
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.30	0.50	31	60664	34	3	28	3	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.30	0.24	0.38	26	62767	43	2	40	1	82
ASE_00120	RNaseP_arch links to Rfam database...	0.72	0.57	0.92	54	46912	7	0	5	2	40
ASE_00121	RNaseP_arch links to Rfam database...	0.77	0.63	0.94	58	45088	5	0	4	1	34
ASE_00122	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.75	51	43297	20	1	16	3	37
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.85	45	38450	10	2	6	2	40
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	45	39290	7	1	4	2	43
ASE_00128	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	54	53235	15	1	11	3	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	59	62768	11	1	7	3	52
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	40	39292	10	1	7	2	45
ASE_00132	RNaseP_bact_a links to Rfam database...	0.48	0.40	0.57	38	50336	31	4	25	2	57
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	59	50334	13	1	9	3	36
ASE_00135	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.51	35	63121	35	4	30	1	74
ASE_00136	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	62	48137	9	1	5	3	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.43	0.66	42	48452	25	2	20	3	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	51	40410	13	3	6	4	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	36	54231	19	0	18	1	68
ASE_00140	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	42	70811	26	3	20	3	83
ASE_00142	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	86	67064	14	3	8	3	36
ASE_00145	RNaseP_arch links to Rfam database...	0.58	0.40	0.85	44	70073	9	0	8	1	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	82	70787	10	2	5	3	42
ASE_00148	RNaseP_arch links to Rfam database...	0.47	0.28	0.80	43	112521	12	0	11	1	111
ASE_00151	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	70	51923	13	7	3	3	28
ASE_00153	RNaseP_nuc links to Rfam database...	0.60	0.48	0.76	35	57584	26	0	11	15	38
ASE_00154	RNaseP_arch links to Rfam database...	0.61	0.50	0.76	53	65271	18	4	13	1	54
ASE_00155	RNaseP_arch links to Rfam database...	0.54	0.35	0.83	50	93468	12	0	10	2	92
ASE_00161	RNaseP_bact_b links to Rfam database...	0.69	0.64	0.75	56	53553	29	4	15	10	31
ASE_00163	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	65	53228	11	2	6	3	28
ASE_00165	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.74	43	52917	19	1	14	4	58
ASE_00168	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	60683	27	0	12	15	33
ASE_00169	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	36	57236	22	1	18	3	71
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	58	48757	16	2	11	3	35
ASE_00171	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	46	48451	22	1	18	3	48
ASE_00172	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.75	49	58931	19	4	12	3	57
ASE_00174	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.69	46	61008	24	3	18	3	63
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.91	59	59966	9	1	5	3	48
ASE_00176	RNaseP_bact_a links to Rfam database...	0.46	0.35	0.60	38	59968	27	1	24	2	72
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	41	44191	24	4	17	3	43
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	61	51288	14	2	9	3	39
ASE_00181	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.76	48	57567	19	3	12	4	58
ASE_00182	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.51	33	84190	33	3	29	1	103
ASE_00183	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	59	61352	17	0	14	3	54
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	56	54550	12	0	9	3	46
ASE_00185	RNaseP_bact_a links to Rfam database...	0.23	0.16	0.32	21	73470	46	8	37	1	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	82	78905	21	2	14	5	50
ASE_00187	RNaseP_arch links to Rfam database...	0.58	0.43	0.78	49	68572	17	1	13	3	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.63	0.57	0.70	58	63107	35	5	20	10	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.42	0.67	38	45394	23	5	14	4	52
ASE_00191	RNaseP_arch links to Rfam database...	0.82	0.70	0.96	43	29601	4	0	2	2	18
ASE_00192	RNaseP_bact_b links to Rfam database...	0.29	0.23	0.38	30	84588	51	6	42	3	103
ASE_00194	RNaseP_bact_b links to Rfam database...	0.60	0.50	0.71	60	73452	32	5	19	8	59
ASE_00196	RNaseP_arch links to Rfam database...	0.66	0.52	0.85	39	31580	9	0	7	2	36
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	80	89156	20	2	15	3	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	62	52583	8	1	4	3	40
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.47	0.68	45	46599	24	1	20	3	51
ASE_00204	RNaseP_bact_b links to Rfam database...	0.62	0.53	0.72	59	67814	30	6	17	7	53
ASE_00205	RNaseP_arch links to Rfam database...	0.71	0.59	0.85	53	45994	12	0	9	3	37
ASE_00209	RNaseP_arch links to Rfam database...	0.77	0.65	0.92	57	43009	7	0	5	2	31
ASE_00210	RNaseP_arch links to Rfam database...	0.69	0.54	0.90	35	27222	5	0	4	1	30
ASE_00212	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.82	80	93864	20	2	15	3	68
ASE_00213	RNaseP_arch links to Rfam database...	0.65	0.48	0.86	32	27224	6	0	5	1	34
ASE_00214	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	56205	13	2	8	3	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.38	0.26	0.54	26	48468	23	2	20	1	73
ASE_00216	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	48	39281	14	3	8	3	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	64	40401	8	2	3	3	26
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	81	64529	13	2	8	3	36
ASE_00222	RNaseP_arch links to Rfam database...	0.47	0.27	0.82	42	112050	10	0	9	1	115
ASE_00227	RNaseP_bact_a links to Rfam database...	0.28	0.21	0.38	28	78930	47	1	44	2	105
ASE_00228	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.76	44	46913	18	2	12	4	42
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	54	42422	13	1	9	3	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	38	47832	27	5	20	2	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.71	48	38435	23	4	16	3	36
ASE_00234	RNaseP_bact_a links to Rfam database...	0.23	0.17	0.32	22	75398	48	3	43	2	107
ASE_00237	RNaseP_nuc links to Rfam database...	0.56	0.48	0.66	27	45712	30	2	12	16	29
ASE_00238	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.76	44	64203	17	3	11	3	70
ASE_00240	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.74	46	46603	19	1	15	3	47
ASE_00241	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	63	43885	11	2	6	3	24
ASE_00242	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	84	60982	12	2	7	3	28
ASE_00245	RNaseP_nuc links to Rfam database...	0.17	0.09	0.33	7	55257	20	3	11	6	71
ASE_00246	RNaseP_nuc links to Rfam database...	0.60	0.48	0.74	32	48162	25	0	11	14	35
ASE_00247	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	54242	28	0	12	16	33
ASE_00248	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	82	62392	11	2	5	4	32
ASE_00250	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.73	64	78915	25	4	20	1	67
ASE_00252	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.64	58	115350	37	4	28	5	110
ASE_00254	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	48	36794	17	1	13	3	34
ASE_00255	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	65	74603	26	5	18	3	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	56	50978	9	4	2	3	41
ASE_00258	RNaseP_nuc links to Rfam database...	0.15	0.11	0.21	6	26768	24	4	18	2	48
ASE_00259	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.73	58	73073	28	1	21	6	63
ASE_00263	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	47	70431	25	3	19	3	73
ASE_00264	RNaseP_nuc links to Rfam database...	0.28	0.14	0.56	14	49116	15	0	11	4	86
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	57	45084	12	2	7	3	31
ASE_00270	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	35	72328	32	0	27	5	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.77	49	55547	18	1	14	3	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.75	44	48146	19	1	14	4	47
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	66	53230	8	2	3	3	35
ASE_00280	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	61	51931	14	1	10	3	37
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44485	9	2	4	3	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.65	45	77746	26	3	21	2	82
ASE_00283	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.82	60	61703	16	2	11	3	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	58	58242	14	2	9	3	50
ASE_00285	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	49	68930	30	2	25	3	73
ASE_00286	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.82	53	46600	15	1	11	3	39
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	56	54879	14	2	9	3	47
ASE_00288	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.77	50	45991	18	2	13	3	43
ASE_00289	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.70	66	100931	31	3	25	3	91
ASE_00292	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	90	81712	11	3	5	3	48
ASE_00294	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.87	88	114380	16	2	11	3	83
ASE_00295	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	82	73831	10	2	5	3	49
ASE_00296	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.87	78	91716	15	3	9	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.50	0.77	49	52911	18	0	15	3	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	47	67463	21	4	14	3	66
ASE_00299	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.42	24	49398	34	1	32	1	76
ASE_00303	RNaseP_nuc links to Rfam database...	0.29	0.20	0.43	19	67852	30	7	18	5	76
ASE_00305	RNaseP_bact_b links to Rfam database...	0.73	0.68	0.77	58	54540	28	4	13	11	27
ASE_00313	RNaseP_nuc links to Rfam database...	0.39	0.20	0.75	18	62457	17	0	6	11	71
ASE_00316	RNaseP_nuc links to Rfam database...	0.27	0.17	0.41	17	107839	35	3	21	11	81
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.74	64	80113	37	6	17	14	54
ASE_00321	RNaseP_bact_b links to Rfam database...	0.74	0.69	0.79	61	54538	25	4	12	9	27
ASE_00327	RNaseP_nuc links to Rfam database...	0.28	0.18	0.43	16	57254	24	1	20	3	73
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	74	72679	31	5	13	13	38
ASE_00329	RNaseP_nuc links to Rfam database...	0.34	0.24	0.48	15	40724	21	11	5	5	48
ASE_00330	RNaseP_nuc links to Rfam database...	0.28	0.17	0.47	15	56248	24	0	17	7	75
ASE_00332	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	87	81711	15	2	10	3	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.72	0.66	0.78	76	75369	33	6	15	12	40
ASE_00337	RNaseP_nuc links to Rfam database...	0.35	0.24	0.50	17	39306	24	2	15	7	54
ASE_00338	RNaseP_nuc links to Rfam database...	0.31	0.19	0.50	19	66392	21	2	17	2	79
ASE_00339	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	40	80131	37	3	26	8	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.59	38	45992	31	3	23	5	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	83	62390	11	3	5	3	32
ASE_00343	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.35	23	83371	49	4	38	7	90
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	18	2	14	2	49
ASE_00353	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	60	57900	13	1	9	3	47
ASE_00359	RNaseP_arch links to Rfam database...	0.37	0.26	0.51	21	42737	24	1	19	4	59
ASE_00360	RNaseP_arch links to Rfam database...	0.78	0.63	0.98	41	29361	2	0	1	1	24
ASE_00361	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	59	75403	7	1	3	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	60	48137	12	2	6	4	31
ASE_00363	RNaseP_bact_a links to Rfam database...	0.77	0.63	0.94	59	51297	7	1	3	3	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	60	54216	12	1	8	3	45
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	47	58586	23	6	14	3	51
ASE_00367	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	61	43002	11	2	6	3	25
ASE_00369	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.86	62	55873	13	1	9	3	45
ASE_00370	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	60	41840	8	1	4	3	24
ASE_00372	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.71	45	51940	21	2	16	3	55
ASE_00374	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44784	9	2	4	3	28
ASE_00375	RNaseP_bact_a links to Rfam database...	0.50	0.39	0.64	43	60311	26	1	23	2	67
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	58	56877	21	2	16	3	47
ASE_00377	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	62	57560	11	1	7	3	45
ASE_00379	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	59	45988	12	2	7	3	30
ASE_00380	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.65	40	54884	24	1	21	2	59
ASE_00382	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	60	41837	11	2	6	3	24
ASE_00383	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	70	54538	10	2	5	3	35
ASE_00384	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	56	48450	13	1	9	3	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	38	41846	24	3	18	3	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	59	50339	8	1	4	3	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.71	52	55872	25	2	19	4	52
ASE_00388	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	57	45686	14	2	8	4	32
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	58	42130	10	2	5	3	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	53	47830	15	1	11	3	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	58	46904	12	1	8	3	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	41552	7	1	3	3	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	55	41551	12	2	8	2	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	64	54544	10	2	5	3	41
ASE_00398	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.82	54	55879	15	0	12	3	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.56	39	57900	33	2	29	2	67
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	51	76961	19	0	16	3	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	63	42419	7	1	3	3	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	61	55877	10	1	6	3	46
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	57	43008	10	2	4	4	28
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.93	64	48759	8	2	3	3	30
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.72	43	49395	20	2	15	3	46
ASE_00412	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	44	58250	20	1	16	3	61
ASE_00413	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	46	44495	14	1	9	4	35
ASE_00414	RNaseP_bact_a links to Rfam database...	0.19	0.16	0.24	15	46298	48	3	44	1	80
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.31	0.48	32	54880	36	3	31	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	76	77326	23	3	16	4	51
ASE_00417	RNaseP_arch links to Rfam database...	0.78	0.63	0.95	63	54549	5	0	3	2	37
ASE_00418	RNaseP_arch links to Rfam database...	0.71	0.55	0.91	41	38736	6	0	4	2	34
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.72	50	54877	20	3	16	1	53
ASE_00420	RNaseP_nuc links to Rfam database...	0.16	0.11	0.23	7	43335	29	5	18	6	56
ASE_00422	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	46	46904	24	3	18	3	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	79	56865	13	3	6	4	30
ASE_00426	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.48	39	60994	42	3	39	0	69
ASE_00427	RNaseP_nuc links to Rfam database...	0.56	0.41	0.76	19	40730	18	1	5	12	27
ASE_00428	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	75	76542	22	5	14	3	50
ASE_00430	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	44	46906	24	1	20	3	53
ASE_00431	RNaseP_bact_a links to Rfam database...	0.27	0.22	0.34	21	46299	40	8	32	0	74
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.55	0.71	60	68180	34	5	20	9	50
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	2	28	3	68
ASE_00438	RNaseP_bact_a links to Rfam database...	0.41	0.32	0.54	37	65997	33	6	26	1	79
ASE_00441	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.43	27	64198	40	4	32	4	85
ASE_00443	RNaseP_nuc links to Rfam database...	0.15	0.08	0.27	4	26781	18	0	11	7	46
ASE_00447	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	83	60286	12	2	7	3	33
ASE_00448	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	81	64169	14	2	9	3	31
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.88	83	70782	14	2	9	3	42
ASE_00454	RNaseP_nuc links to Rfam database...	0.05	0.03	0.09	2	43342	25	1	20	4	61
CRW_00013	Intron_gpI links to Rfam database...	0.33	0.21	0.53	24	103695	23	4	17	2	91
CRW_00016	Intron_gpI links to Rfam database...	0.31	0.19	0.51	23	77376	24	7	15	2	97
CRW_00610	Intron_gpI links to Rfam database...	0.16	0.09	0.32	7	36293	15	1	14	0	74
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34956	24	7	17	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121749	22	4	18	0	57
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.10	0.32	6	56261	13	1	12	0	55
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165006	19	2	17	0	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150963	16	0	12	4	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153149	34	7	25	2	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129785	17	1	9	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.27	0.74	29	63507	14	0	10	4	77
CRW_00634	Intron_gpI links to Rfam database...	0.47	0.30	0.74	28	64582	18	0	10	8	66
CRW_00670	Intron_gpI links to Rfam database...	0.47	0.26	0.86	31	70089	7	0	5	2	89
CRW_00671	Intron_gpI links to Rfam database...	0.56	0.37	0.84	43	62784	10	0	8	2	74
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.28	0.67	31	72344	17	0	15	2	80
CRW_00674	Intron_gpI links to Rfam database...	0.22	0.14	0.37	17	83390	29	5	24	0	107
CRW_00676	Intron_gpI links to Rfam database...	0.03	0.02	0.07	2	93500	31	4	22	5	113
CRW_00692	Intron_gpI links to Rfam database...	0.03	0.01	0.06	1	68619	22	0	15	7	89
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27011	17	1	16	0	81
PDB_00919	RNaseP_bact_a links to Rfam database...	0.27	0.21	0.35	22	44191	40	3	37	0	81
RFA_00597	Telomerase-vert links to Rfam database...	0.71	0.66	0.76	72	97808	43	8	15	20	37
RFA_00598	Telomerase-vert links to Rfam database...	0.72	0.68	0.77	69	84576	40	5	16	19	32
RFA_00599	Telomerase-vert links to Rfam database...	0.54	0.51	0.57	57	101375	62	5	38	19	54
RFA_00600	Telomerase-vert links to Rfam database...	0.53	0.49	0.57	49	120209	62	10	27	25	51
RFA_00601	Telomerase-vert links to Rfam database...	0.74	0.73	0.75	83	99124	49	4	24	21	31
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.68	0.69	79	101361	50	5	30	15	37
RFA_00606	Telomerase-cil links to Rfam database...	0.53	0.51	0.56	20	21285	25	4	12	9	19
RFA_00620	Telomerase-cil links to Rfam database...	0.20	0.18	0.23	7	21915	33	7	16	10	32
RFA_00621	RNase_MRP links to Rfam database...	0.34	0.18	0.64	14	46338	14	0	8	6	62
RFA_00623	RNase_MRP links to Rfam database...	0.42	0.23	0.75	18	43932	10	1	5	4	60
RFA_00624	RNase_MRP links to Rfam database...	0.27	0.18	0.39	11	30107	20	0	17	3	50
RFA_00626	rne5 links to Rfam database...	0.89	0.87	0.92	76	56533	29	2	5	22	11
RFA_00627	rne5 links to Rfam database...	0.83	0.79	0.87	69	56874	36	1	9	26	18
RFA_00628	rne5 links to Rfam database...	0.85	0.81	0.89	70	57212	38	2	7	29	16
RFA_00630	rne5 links to Rfam database...	0.82	0.78	0.86	68	56874	33	2	9	22	19
RFA_00639	7SK links to Rfam database...	0.31	0.31	0.31	27	54527	69	10	51	8	60
RFA_00805	RNAIII links to Rfam database...	0.78	0.72	0.84	108	133257	31	1	20	10	42
RFA_00814	R2_retro_el links to Rfam database...	0.95	0.93	0.97	38	25161	22	0	1	21	3
RFA_00815	R2_retro_el links to Rfam database...	0.96	0.93	1.00	38	24493	15	0	0	15	3
RFA_00816	R2_retro_el links to Rfam database...	0.96	0.93	1.00	38	23182	15	0	0	15	3
RFA_00817	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	21909	12	0	0	12	5
RFA_00818	R2_retro_el links to Rfam database...	0.64	0.68	0.61	28	20255	30	11	7	12	13
RFA_00819	R2_retro_el links to Rfam database...	0.94	0.90	0.97	37	27928	26	0	1	25	4
RFA_00820	bicoid_3 links to Rfam database...	0.88	0.88	0.87	141	151363	51	0	21	30	19
RFA_00830	bicoid_3 links to Rfam database...	0.61	0.59	0.63	91	152484	92	2	51	39	63
SRP_00002	Metazoa_SRP links to Rfam database...	0.84	0.82	0.87	84	45053	19	0	13	6	18
SRP_00006	Metazoa_SRP links to Rfam database...	0.84	0.82	0.86	83	45657	22	0	13	9	18
SRP_00009	Plant_SRP links to Rfam database...	0.82	0.80	0.83	82	46566	28	0	17	11	20
SRP_00011	Plant_SRP links to Rfam database...	0.77	0.77	0.78	80	46257	31	0	23	8	24
SRP_00012	Plant_SRP links to Rfam database...	0.86	0.84	0.89	85	46264	26	0	11	15	16
SRP_00015	Plant_SRP links to Rfam database...	0.87	0.85	0.89	84	46266	25	0	10	15	15
SRP_00016	Archaea_SRP links to Rfam database...	0.92	0.89	0.95	97	47793	15	0	5	10	12
SRP_00018	Fungi_SRP links to Rfam database...	0.84	0.74	0.95	60	38440	16	0	3	13	21
SRP_00019	Fungi_SRP links to Rfam database...	0.76	0.65	0.88	59	35979	18	0	8	10	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.92	0.91	0.94	90	44754	20	0	6	14	9
SRP_00053	Metazoa_SRP links to Rfam database...	0.89	0.87	0.90	82	45059	25	0	9	16	12
SRP_00060	Metazoa_SRP links to Rfam database...	0.93	0.91	0.95	91	44455	15	0	5	10	9
SRP_00061	Metazoa_SRP links to Rfam database...	0.93	0.91	0.95	91	44754	15	0	5	10	9
SRP_00066	Metazoa_SRP links to Rfam database...	0.85	0.83	0.86	83	45355	25	0	13	12	17
SRP_00069	Fungi_SRP links to Rfam database...	0.66	0.58	0.77	49	34389	25	3	12	10	36
SRP_00070	Fungi_SRP links to Rfam database...	0.45	0.37	0.55	45	126674	45	7	30	8	76
SRP_00073	Fungi_SRP links to Rfam database...	0.66	0.61	0.72	43	39000	31	4	13	14	28
SRP_00079	Plant_SRP links to Rfam database...	0.68	0.66	0.71	58	41823	39	0	24	15	30
SRP_00085	Plant_SRP links to Rfam database...	0.81	0.79	0.82	80	45354	30	0	17	13	21
SRP_00086	Metazoa_SRP links to Rfam database...	0.91	0.90	0.93	90	44156	17	0	7	10	10
SRP_00087	Fungi_SRP links to Rfam database...	0.32	0.34	0.31	20	37336	53	16	29	8	38
SRP_00091	Fungi_SRP links to Rfam database...	0.59	0.48	0.73	46	52912	29	3	14	12	49
SRP_00099	Plant_SRP links to Rfam database...	0.55	0.56	0.55	53	44753	48	3	41	4	42
SRP_00102	Metazoa_SRP links to Rfam database...	0.90	0.88	0.93	89	44455	16	0	7	9	12
SRP_00103	Metazoa_SRP links to Rfam database...	0.91	0.89	0.92	91	45352	17	0	8	9	11
SRP_00104	Fungi_SRP links to Rfam database...	0.53	0.49	0.57	34	34393	37	5	21	11	35
SRP_00117	Metazoa_SRP links to Rfam database...	0.81	0.78	0.83	80	45355	24	0	16	8	22
SRP_00123	Metazoa_SRP links to Rfam database...	0.78	0.76	0.81	69	36500	24	3	13	8	22
SRP_00124	Metazoa_SRP links to Rfam database...	0.60	0.55	0.64	47	37055	30	6	20	4	38
SRP_00127	Fungi_SRP links to Rfam database...	0.55	0.42	0.71	50	72320	24	3	17	4	69
SRP_00130	Archaea_SRP links to Rfam database...	0.74	0.70	0.77	68	49682	35	1	19	15	29
SRP_00136	Fungi_SRP links to Rfam database...	0.57	0.54	0.61	38	44191	37	9	15	13	33
SRP_00142	Archaea_SRP links to Rfam database...	0.89	0.87	0.90	81	45966	25	0	9	16	12
SRP_00143	Archaea_SRP links to Rfam database...	0.84	0.83	0.85	84	49671	26	0	15	11	17
SRP_00144	Archaea_SRP links to Rfam database...	0.87	0.86	0.87	81	46572	28	0	12	16	13
SRP_00148	Fungi_SRP links to Rfam database...	0.60	0.51	0.72	44	50025	27	0	17	10	43
SRP_00152	Plant_SRP links to Rfam database...	0.88	0.86	0.89	89	45653	21	0	11	10	14
SRP_00153	Plant_SRP links to Rfam database...	0.86	0.85	0.88	91	46867	22	0	13	9	16
SRP_00157	Fungi_SRP links to Rfam database...	0.56	0.53	0.60	38	44190	39	5	20	14	34
SRP_00158	Fungi_SRP links to Rfam database...	0.25	0.18	0.35	21	124191	44	8	31	5	94
SRP_00160	Fungi_SRP links to Rfam database...	0.42	0.32	0.54	42	86242	46	0	36	10	88
SRP_00171	Metazoa_SRP links to Rfam database...	0.83	0.83	0.84	73	45364	36	0	14	22	15
SRP_00175	Fungi_SRP links to Rfam database...	0.58	0.49	0.69	41	44492	33	2	16	15	43
SRP_00178	Plant_SRP links to Rfam database...	0.89	0.88	0.89	90	45652	23	0	11	12	12
SRP_00179	Plant_SRP links to Rfam database...	0.87	0.86	0.88	90	45954	23	0	12	11	15
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.79	0.80	81	45955	30	0	20	10	21
SRP_00182	Plant_SRP links to Rfam database...	0.84	0.83	0.85	84	45957	25	0	15	10	17
SRP_00184	Plant_SRP links to Rfam database...	0.78	0.77	0.79	77	45958	34	0	21	13	23
SRP_00188	Plant_SRP links to Rfam database...	0.54	0.51	0.58	40	31056	32	7	22	3	39
SRP_00197	Archaea_SRP links to Rfam database...	0.92	0.90	0.94	91	49358	24	0	6	18	10
SRP_00198	Archaea_SRP links to Rfam database...	0.90	0.87	0.92	90	50942	24	0	8	16	13
SRP_00199	Archaea_SRP links to Rfam database...	0.89	0.88	0.91	92	50939	21	0	9	12	13
SRP_00201	Archaea_SRP links to Rfam database...	0.94	0.93	0.96	103	47788	11	0	4	7	8
SRP_00202	Archaea_SRP links to Rfam database...	0.89	0.85	0.93	100	54178	16	0	7	9	17
SRP_00203	Archaea_SRP links to Rfam database...	0.83	0.83	0.83	87	48723	25	0	18	7	18
SRP_00204	Archaea_SRP links to Rfam database...	0.87	0.85	0.88	87	49042	25	0	12	13	15
SRP_00206	Archaea_SRP links to Rfam database...	0.94	0.93	0.96	100	47791	14	0	4	10	8
SRP_00208	Archaea_SRP links to Rfam database...	0.91	0.88	0.95	89	46571	20	0	5	15	12
SRP_00228	Metazoa_SRP links to Rfam database...	0.89	0.87	0.90	83	45359	23	0	9	14	12
SRP_00230	Fungi_SRP links to Rfam database...	0.68	0.57	0.81	51	39558	23	3	9	11	39
SRP_00239	Plant_SRP links to Rfam database...	0.49	0.52	0.48	48	50302	62	6	47	9	45
SRP_00240	Plant_SRP links to Rfam database...	0.76	0.75	0.77	77	48105	33	3	20	10	25
SRP_00241	Plant_SRP links to Rfam database...	0.50	0.51	0.49	42	45970	54	8	36	10	40
SRP_00247	Metazoa_SRP links to Rfam database...	0.51	0.54	0.49	47	47182	55	8	41	6	40
SRP_00252	Metazoa_SRP links to Rfam database...	0.65	0.63	0.67	56	49057	40	2	26	12	33
SRP_00253	Metazoa_SRP links to Rfam database...	0.62	0.62	0.62	56	49364	48	5	30	13	34
SRP_00254	Fungi_SRP links to Rfam database...	0.35	0.36	0.34	22	32321	49	10	32	7	39
SRP_00255	Archaea_SRP links to Rfam database...	0.74	0.76	0.73	71	47489	40	1	25	14	23
SRP_00257	Metazoa_SRP links to Rfam database...	0.62	0.55	0.69	59	50955	29	4	22	3	49
SRP_00260	Metazoa_SRP links to Rfam database...	0.50	0.47	0.53	47	47806	44	6	36	2	53
SRP_00265	Fungi_SRP links to Rfam database...	0.63	0.59	0.68	43	41265	35	7	13	15	30
SRP_00267	Metazoa_SRP links to Rfam database...	0.89	0.89	0.90	85	44457	21	0	9	12	11
SRP_00276	Archaea_SRP links to Rfam database...	0.93	0.91	0.94	100	50615	13	0	6	7	10
SRP_00278	Archaea_SRP links to Rfam database...	0.73	0.69	0.77	72	45963	26	0	21	5	33
SRP_00282	Metazoa_SRP links to Rfam database...	0.27	0.32	0.23	20	43279	76	19	47	10	43
SRP_00286	Fungi_SRP links to Rfam database...	0.51	0.36	0.71	63	136937	37	1	25	11	111
SRP_00287	Fungi_SRP links to Rfam database...	0.48	0.35	0.65	57	141690	43	2	29	12	105
SRP_00290	Fungi_SRP links to Rfam database...	0.48	0.35	0.65	47	100504	36	2	23	11	88
SRP_00292	Fungi_SRP links to Rfam database...	0.50	0.36	0.70	62	137461	38	1	26	11	111
SRP_00294	Fungi_SRP links to Rfam database...	0.60	0.45	0.82	75	129194	27	1	16	10	92
SRP_00299	Metazoa_SRP links to Rfam database...	0.78	0.77	0.80	76	44158	28	0	19	9	23
SRP_00300	Metazoa_SRP links to Rfam database...	0.88	0.86	0.90	81	44163	23	0	9	14	13
SRP_00301	Fungi_SRP links to Rfam database...	0.58	0.47	0.73	40	32585	26	2	13	11	46
SRP_00302	Fungi_SRP links to Rfam database...	0.51	0.44	0.58	36	41554	39	3	23	13	45
SRP_00317	Metazoa_SRP links to Rfam database...	0.89	0.87	0.92	85	45058	22	0	7	15	13
SRP_00321	Archaea_SRP links to Rfam database...	0.76	0.75	0.78	81	47482	30	0	23	7	27
SRP_00322	Archaea_SRP links to Rfam database...	0.79	0.75	0.83	82	48417	26	0	17	9	27
SRP_00323	Archaea_SRP links to Rfam database...	0.85	0.83	0.87	89	47176	22	0	13	9	18
SRP_00328	Metazoa_SRP links to Rfam database...	0.64	0.60	0.69	51	39547	31	4	19	8	34
SRP_00329	Metazoa_SRP links to Rfam database...	0.63	0.60	0.65	51	39825	35	4	23	8	34
SRP_00330	Archaea_SRP links to Rfam database...	0.80	0.80	0.81	76	49992	29	2	16	11	19
SRP_00331	Metazoa_SRP links to Rfam database...	0.55	0.48	0.64	42	37609	30	1	23	6	45
SRP_00332	Archaea_SRP links to Rfam database...	0.95	0.93	0.97	99	50301	15	0	3	12	7
SRP_00339	Archaea_SRP links to Rfam database...	0.78	0.78	0.78	73	44458	27	4	16	7	21
SRP_00340	Metazoa_SRP links to Rfam database...	0.58	0.56	0.60	46	41251	43	4	27	12	36
SRP_00347	Metazoa_SRP links to Rfam database...	0.93	0.93	0.94	89	46570	18	0	6	12	7
SRP_00361	Plant_SRP links to Rfam database...	0.77	0.77	0.77	69	41815	33	5	16	12	21
SRP_00368	Metazoa_SRP links to Rfam database...	0.90	0.88	0.92	86	43863	19	0	7	12	12
SRP_00371	Fungi_SRP links to Rfam database...	0.76	0.71	0.82	58	36244	22	2	11	9	24
SRP_00382	Fungi_SRP links to Rfam database...	0.53	0.38	0.74	64	141691	31	0	23	8	106
TMR_00173	tmRNA links to Rfam database...	0.41	0.31	0.54	13	42171	18	2	9	7	29
TMR_00357	tmRNA links to Rfam database...	0.19	0.13	0.28	12	82985	38	4	27	7	80
TMR_00601	tmRNA links to Rfam database...	0.67	0.62	0.72	26	58960	30	1	9	20	16
TMR_00603	tmRNA links to Rfam database...	0.78	0.70	0.88	30	60344	30	0	4	26	13
TMR_00611	tmRNA links to Rfam database...	0.48	0.35	0.65	36	61370	19	4	15	0	66
TMR_00696	tmRNA links to Rfam database...	0.35	0.25	0.51	28	85023	34	3	24	7	86

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of MXScarna(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

2. Individual counts for MXScarna(seed) [ download as .csv ]