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Modeling examples

  • tRNA models for tRNA(Thr) from E.coli

    Collection of templates, alignments, models, and scripts to build a model of a threonyl-tRNA in a conformation resembling the state bound to an aaRS protein. The files generate five different models using slightly different approaches.
    (this is supplementary data for manuscript submitted to BiB (07/2011)

  • Group I self-splicing intron from Azoarcus

    Detailed description how a Group I intron model was built using multiple templates, using the protocol published by Flores et al.

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