The molecule is shown in a ball-and-stick representation with the
following colors for atoms :
⬤ Hydrogen (H): white
⬤ Carbon (C): gray
⬤ Oxygen (O): red
⬤ Phosphorus (P): orange
⬤ Nitrogen (N): blue
⬤ Selenium (Se): gold
⬤ Sulfur (S): yellow
Summary
| Full name | adenosine pentaphosphate 5' cap (cap Ap5N) |
| Short name | ApppppN |
| MODOMICS code new | 2000004555N |
| MODOMICS code | 4555N |
| Nature of the modified residue | Natural |
| Residue unique ID | 335 |
| Found in RNA | Yes |
Chemical information
| Sum formula | |
| Type of moiety | nucleotide |
| SMILES | |
| logP | None |
| TPSA | None |
| Number of atoms | None |
| Number of Hydrogen Bond Acceptors 1 (HBA1) | None |
| Number of Hydrogen Bond Acceptors 2 (HBA2) | None |
| Number of Hydrogen Bond Donors (HBD) | None |
| InChI | None |
| InChIKey | None |
* Chemical properties calculated with Open Babel - O'Boyle et al. Open Babel: An open chemical toolbox. J Cheminform 3, 33 (2011) (link)
Download Structures
LC-MS Information
| Monoisotopic mass | None |
| Average mass | None |
| [M+H]+ | not available |
| Product ions | not available |
| Normalized LC elution time * | not available |
| LC elution order/characteristics | not available |
* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.
Reactions producing adenosine pentaphosphate 5' cap (cap Ap5N)
Last modification of this entry: Sept. 22, 2023