Modomics - A Database of RNA Modifications

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To the users' knowledge, some UNICODE characters previously used to represent modifications along RNA sequences have been changed. Special characters like ',=,+ etc. or any other special character causing problems in software like excel, python, notpad++ or other text editors, have been changed. Their new version is highlighted with a different color than before in the RNAMods new column.
MODOMICS Database ID Name RNAMods code (2023) MODOMICS code new (2023) Short Name Moiety type SMILES Reference NucleoBase
297 (2R,4S)-1-[(4R)-3,4-dihydroxytetrahydrofuran-2-YL]-5-[(methylamino)methyl]-1,2,3,4-tetrahydropyrimidine-2,4-diol-5'-monophosphate { 2000511551U pmnm5U nucleotide CNCc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)c1 U
32 1,2'-O-dimethyladenosine œ 2000000901A m1Am nucleoside CO[C@H]1[C@H]([n]2c3nc[n](c(=N)c3nc2)C)O[C@H](CO)[C@H]1O A
340 1,2'-O-dimethyladenosine-5'-monophosphate œ 2000901551A pm1Am nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cnc2c(=N)[n](C)cnc12 A
63 1,2'-O-dimethylguanosine ε 2000000901G m1Gm nucleoside CO[C@H]1[C@H]([n]2c3nc([n](c(=O)c3nc2)C)N)O[C@H](CO)[C@H]1O G
341 1,2'-O-dimethylguanosine-5'-monophosphate ε 2000901551G pm1Gm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cnc2c(=O)[n](C)c(N)nc12 G
33 1,2'-O-dimethylinosine ξ 2000009019A m1Im nucleoside CO[C@H]1[C@H]([n]2c3nc[n](c(=O)c3nc2)C)O[C@H](CO)[C@H]1O A
342 1,2'-O-dimethylinosine-5'-monophosphate ξ 2009019551A pm1Im nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cnc2c(=O)[n](C)cnc12 A
230 1-(5-O-phosphono-beta-D-ribofuranosyl)-2-selanylpyrimidin-4(1H)-one ω 2000020551U pse2U nucleotide O[C@@H]1[C@@H](COP(=O)([O-])[O-])O[C@@H]([n]2c(=[Se])[nH]c(=O)cc2)[C@@H]1O U
187 1-(beta-D-ribofuranosyl)-2-thio-uracil-5'-phosphate 2 2000002551U ps2U nucleotide O=c1cc[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]1 U
8 1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine α 2000001309U m1acp3Y nucleoside C[n]1c(=O)[n](CCC(C(=O)O)N)c(=O)c([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1 U
343 1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine-5'-monophosphate α 2001309551U pm1acp3Y nucleotide C[n]1cc([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[n](CCC(N)C(=O)O)c1=O U
83 1-methyladenosine Ѣ 2000000001A m1A nucleoside C[n]1c(=N)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)cn2)nc1 A
22 1-methylguanosine K 2000000001G m1G nucleoside CN1C(=O)c2[n]c[n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)c2N=C1N G
26 1-methylinosine O 2000000019A m1I nucleoside C[n]1c(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)cn2)nc1 A
344 1-methylinosine-5'-monophosphate O 2000019551A pm1I nucleotide C[n]1cnc2c(nc[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c1=O A
88 1-methylpseudouridine ] 2000000019U m1Y nucleoside C[n]1c(=O)[nH]c(=O)c([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1 U
345 1-methylpseudouridine-5'-monophosphate ] 2000019551U pm1Y nucleotide C[n]1cc([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
214 1N-methylguanosine-5'-monophosphate K 2000001551G pm1G nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1N=C(N)N(C2=O)C)(=O)[O-] G
296 2',5-dimethyluridine-5'-monophosphate Ħ 2000905551U pm5Um nucleotide CO[C@H]1[C@H]([n]2c(=O)[nH]c(=O)c(C)c2)O[C@H](COP(=O)([O-])[O-])[C@H]1O U
256 2'-O-[(5'-phospho)ribosyl]adenosine-5'-monophosphate ʩ 2900255551A pAr(p) nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)O[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] A
183 2'-O-methyl-5-hydroxymethylcytidine ¡ 2000009051C hm5Cm nucleoside CO[C@H]1[C@H]([n]2cc(CO)c(N)nc2=O)O[C@H](CO)[C@H]1O C
366 2'-O-methyl-5-hydroxymethylcytidine-5'-monophosphate ¡ 2009051551C phm5Cm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cc(CO)c(N)nc1=O C
127 2'-O-methyladenosine ʍ 2000000090A Am nucleoside CO[C@H]1[C@H]([n]2cnc3c2ncnc3N)O[C@H](CO)[C@H]1O A
207 2'-O-methyladenosine 5'-(dihydrogen phosphate) ʍ 2000090551A pAm nucleotide [O-]P(OC[C@H]1O[C@@H]([n]2c3[n]c[n]c(N)c3[n]c2)[C@@H]([C@@H]1O)OC)(=O)[O-] A
84 2'-O-methylcytidine B 2000000090C Cm nucleoside CO[C@H]1[C@H]([n]2ccc(N)nc2=O)O[C@H](CO)[C@H]1O C
28 2'-O-methylguanosine # 2000000090G Gm nucleoside CO[C@H]1[C@H]([n]2cnc3c2nc(N)[nH]c3=O)O[C@H](CO)[C@H]1O G
128 2'-O-methylinosine Ш 2000000909A Im nucleoside CO[C@H]1[C@H]([n]2cnc3c2nc[nH]c3=O)O[C@H](CO)[C@H]1O A
367 2'-O-methylinosine-5'-monophosphate Ш 2000909551A pIm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cnc2c(=O)[nH]cnc12 A
103 2'-O-methylpseudouridine Z 2000000909U Ym nucleoside CO[C@H]1[C@H](c2c[nH]c(=O)[nH]c2=O)O[C@H](CO)[C@H]1O U
368 2'-O-methylpseudouridine-5'-monophosphate Z 2000909551U pYm nucleotide CO[C@H]1[C@H](c2c[nH]c(=O)[nH]c2=O)O[C@H](COP(=O)([O-])[O-])[C@H]1O U
50 2'-O-methyluridine J 2000000090U Um nucleoside CO[C@H]1[C@H]([n]2ccc(=O)[nH]c2=O)O[C@H](CO)[C@H]1O U
179 2'-O-methyluridine 5-oxyacetic acid methyl ester Ͽ 2000090503U mcmo5Um nucleoside COC(COc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2OC)c(=O)[nH]c1=O)=O U
369 2'-O-methyluridine 5-oxyacetic acid methyl ester-5'-monophosphate Ͽ 2090503551U pmcmo5Um nucleotide COC(=O)COc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2OC)c(=O)[nH]c1=O U
20 2'-O-ribosyladenosine (phosphate) ʩ 2000000000A Ar(p) nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)O[C@@H]1[C@@H]([C@H](O[C@H]1[n]1c2[n]c[n]c(c2[n]c1)N)CO)O)(=O)[O-] A
34 2'-O-ribosylguanosine (phosphate) 2000000900G Gr(p) nucleotide Nc1[nH]c(=O)c2c([n]([C@H]3[C@H](O[C@H]4[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O4)[C@H](O)[C@@H](CO)O3)cn2)n1 G
370 2'-O-ribosylguanosine (phosphate)-5'-monophosphate 2900255551G pGr(p) nucleotide Nc1nc(=O)c2c([n]([C@H]3[C@H](O[C@H]4[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O4)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)cn2)n1 G
174 2'3'-cyclic phosphate end Ғ 2000003377N N2'3'cp nucleotide [O-]P([O-])(OC[C@H]1O[C@@H]%91[C@@H]2OP([O-])(O[C@H]12)=O)=O.[*]%91 A
136 2,8-dimethyladenosine ± 2000000028A m2,8A nucleoside Cc1nc2c(N)nc(C)nc2[n]1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
371 2,8-dimethyladenosine-5'-monophosphate ± 2000028551A pm2,8A nucleotide Cc1nc(N)c2nc(C)[n]([C@@H]3O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]3O)c2n1 A
182 2- methylthiomethylenethio-N6-isopentenyl-adenosine £ 2000021161A msms2i6A nucleoside CC(C)=CCNc1nc(SCSC)nc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
372 2- methylthiomethylenethio-N6-isopentenyl-adenosine-5'-monophosphate £ 2021161551A pmsms2i6A nucleotide CSCSc1nc(NCC=C(C)C)c2nc[n]([C@@H]3O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]3O)c2n1 A
166 2-geranylthiouridine Γ 2000000021U ges2U nucleoside CC(C)=CCC/C(/C)=C/CSc1nc(=O)cc[n]1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O U
373 2-geranylthiouridine-5'-monophosphate Γ 2000021551U pges2U nucleotide CC(C)=CCC/C(/C)=C/CSc1nc(=O)cc[n]1[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O U
101 2-lysidine } 2000000021C k2C nucleoside N[C@H](C(=O)O)CCCCN=c1[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)ccc(N)n1 C
346 2-lysidine-5'-monophosphate } 2000021551C pk2C nucleotide Nc1cc[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=NCCCC[C@H](N)C(=O)O)n1 C
37 2-methyladenosine ɿ 2000000002A m2A nucleoside Cc1nc2c(nc[n]2[C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c(N)n1 A
219 2-methyladenosine-5'-monophosphate ɿ 2000002551A pm2A nucleotide Cc1nc2c(nc[n]2[C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)c(N)n1 A
180 2-methylthio cyclic N6-threonylcarbamoyladenosine ÿ 2000002164A ms2ct6A nucleoside CSc1nc2c(nc[n]2[C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c(C2C(=O)[C@H]([C@H](O)C)NC2=O)n1 A
374 2-methylthio cyclic N6-threonylcarbamoyladenosine-5'-monophosphate ÿ 2002164551A pms2ct6A nucleotide CSc1nc(C2C(=O)N[C@@H]([C@@H](C)O)C2=O)c2nc[n]([C@@H]3O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]3O)c2n1 A
126 2-methylthio-N6-(cis-hydroxyisopentenyl) adenosine 2000002160A ms2io6A nucleoside CC(CO)=CCNc1nc(SC)nc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
375 2-methylthio-N6-(cis-hydroxyisopentenyl) adenosine-5'-monophosphate 2002160551A pms2io6A nucleotide CSc1nc(NCC=C(C)CO)c2nc[n]([C@@H]3O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]3O)c2n1 A
79 2-methylthio-N6-hydroxynorvalylcarbamoyladenosine 2000002163A ms2hn6A nucleoside CCC(O)C(NC(Nc1nc(SC)nc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=O)C(O)=O A
376 2-methylthio-N6-hydroxynorvalylcarbamoyladenosine-5'-monophosphate 2002163551A pms2hn6A nucleotide CCC(O)C(NC(=O)Nc1nc(SC)nc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O)C(=O)O A
240 2-methylthio-N6-isopentenyl-adenosine-5'-monophosphate * 2002161551A pms2i6A nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c(SC)[n]c2NCC=C(C)C)(=O)[O-] A
51 2-methylthio-N6-isopentenyladenosine * 2000002161A ms2i6A nucleoside CC(C)=CCNc1nc(SC)nc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
5 2-methylthio-N6-methyladenosine 2000000621A ms2m6A nucleoside CNc1nc(SC)nc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
377 2-methylthio-N6-methyladenosine-5'-monophosphate 2000621551A pms2m6A nucleotide CNc1nc(SC)nc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O A
55 2-methylthio-N6-threonylcarbamoyladenosine [ 2000002162A ms2t6A nucleoside CC(O)C(NC(Nc1nc(SC)nc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=O)C(O)=O A
378 2-methylthio-N6-threonylcarbamoyladenosine-5'-monophosphate [ 2002162551A pms2t6A nucleotide CSc1nc(NC(=O)NC(C(=O)O)C(C)O)c2nc[n]([C@@H]3O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]3O)c2n1 A
94 2-selenouridine ω 2000000020U se2U nucleoside O[C@H]1[C@H]([n]2ccc(=O)[nH]c2=[Se])O[C@H](CO)[C@H]1O U
117 2-thio-2'-O-methyluridine 2000000902U s2Um nucleoside CO[C@H]1[C@H]([n]2ccc(=O)[nH]c2=S)O[C@H](CO)[C@H]1O U
379 2-thio-2'-O-methyluridine-5'-monophosphate 2000902551U ps2Um nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1ccc(=O)[nH]c1=S U
92 2-thiocytidine ʤ 2000000002C s2C nucleoside Nc1nc(=S)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)cc1 C
347 2-thiocytidine-5'-monophosphate ʤ 2000002551C ps2C nucleotide Nc1cc[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)n1 C
100 2-thiouridine 2 2000000002U s2U nucleoside O[C@H]1[C@H]([n]2ccc(=O)[nH]c2=S)O[C@H](CO)[C@H]1O U
191 2N-methylguanosine-5'-monophosphate L 2000002551G pm2G nucleotide CNc1nc2c(nc[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
57 3,2'-O-dimethyluridine σ 2000000903U m3Um nucleoside C[n]1c(=O)cc[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2OC)c1=O U
380 3,2'-O-dimethyluridine-5'-monophosphate σ 2000903551U pm3Um nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1ccc(=O)[n](C)c1=O U
137 3-(3-amino-3-carboxypropyl)-5,6-dihydrouridine Ð 2000000308U acp3D nucleoside NC(CCN1C(=O)N([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)CCC1=O)C(O)=O U
381 3-(3-amino-3-carboxypropyl)-5,6-dihydrouridine-5'-monophosphate Ð 2000308551U pacp3D nucleotide NC(CCN1C(=O)CCN([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)C1=O)C(=O)O U
138 3-(3-amino-3-carboxypropyl)pseudouridine Þ 2000000309U acp3Y nucleoside NC(C(=O)O)CC[n]1c(=O)c([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c[nH]c1=O U
348 3-(3-amino-3-carboxypropyl)pseudouridine-5'-monophosphate Þ 2000309551U pacp3Y nucleotide NC(CC[n]1c(=O)[nH]cc([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c1=O)C(=O)O U
75 3-(3-amino-3-carboxypropyl)uridine X 2000000030U acp3U nucleoside NC(CC[n]1c(=O)[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)ccc1=O)C(O)=O U
382 3-(3-amino-3-carboxypropyl)uridine-5'-monophosphate X 2000030551U pacp3U nucleotide NC(CC[n]1c(=O)cc[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c1=O)C(=O)O U
299 3-Methylcytidine- 5'-monophosphate Щ 2000003551C pm3C nucleotide C[n+]1c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)ccc1N C
52 3-methylcytidine Щ 2000000003C m3C nucleoside C[n+]1c(N)cc[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c1=O C
48 3-methylpseudouridine Ƒ 2000000039U m3Y nucleoside C[n]1c(=O)c([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c[nH]c1=O U
349 3-methylpseudouridine-5'-monophosphate Ƒ 2000039551U pm3Y nucleotide C[n]1c(=O)[nH]cc([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c1=O U
49 3-methyluridine δ 2000000003U m3U nucleoside C[n]1c(=O)[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)ccc1=O U
199 3-methyluridine-5'-monophosphate δ 2000003551U pm3U nucleotide C[n]1c(=O)cc[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c1=O U
108 4-demethylwyosine 2000000004G imG-14 nucleoside Cc1c[n]2c(c3nc[n]([C@@H]4O[C@H](CO)[C@@H](O)[C@H]4O)c3[nH]c2n1)=O G
383 4-demethylwyosine-5'-monophosphate 2000004551G pimG-14 nucleotide Cc1c[n]2c(=O)c3nc[n]([C@@H]4O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]4O)c3[nH]c2n1 G
281 4-methyl, cytidine-5'-monophosphate ν 2000004551C pm4C nucleotide CNc1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)cc1 C
7 4-thiouridine 4 2000000074U s4U nucleoside OC[C@H]1O[C@@H]([n]2ccc(=S)[nH]c2=O)[C@H](O)[C@@H]1O U
216 4-thiouridine-5'-monophosphate 4 2000074551U ps4U nucleotide O=c1[nH]c(=S)cc[n]1[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O U
208 4N,O2'-methylcytidine-5'-monophosphate λ 2000904551C pm4Cm nucleotide CNc1cc[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2OC)c(=O)n1 C
149 5' (3' -dephospho-CoA) 2000000455N CoApN nucleotide CC(C)(COP([O-])(OP([O-])(OC[C@H]1O[C@@H]([n]2cnc3c(N)ncnc23)[C@H](O)[C@@H]1OP([O-])(OC[C@H]1O[C@@H]%91[C@H](O)[C@@H]1O)=O)=O)=O)C(O)C(NCCC(NCCS)=O)=O.[*]%91 A
150 5' (3' -dephosphoacetyl-CoA) 2000004155N acCoApN nucleotide CC(SCCNC(CCNC(C(O)C(C)(C)COP([O-])(OP([O-])(OC[C@H]1O[C@@H]([n]2cnc3c(N)ncnc23)[C@H](O)[C@@H]1OP([O-])(OC[C@H]1O[C@@H]%91[C@H](O)[C@@H]1O)=O)=O)=O)=O)=O)=O.[*]%91 A
151 5' (3' -dephosphomalonyl-CoA) 2000004255N malonyl-CoApN nucleotide CC(C)(COP([O-])(OP([O-])(OC[C@H]1O[C@@H]([n]2cnc3c(N)ncnc23)[C@H](O)[C@@H]1OP([O-])(OC[C@H]1O[C@@H]%91[C@H](O)[C@@H]1O)=O)=O)=O)C(O)C(NCCC(NCCSC(CC(O)=O)=O)=O)=O.[*]%91 A
152 5' (3' -dephosphosuccinyl-CoA) 2000004355N succinyl-CoApN nucleotide CC(C)(COP([O-])(OP([O-])(OC[C@H]1O[C@@H]([n]2cnc3c(N)ncnc23)[C@H](O)[C@@H]1OP([O-])(OC[C@H]1O[C@@H]%91[C@H](O)[C@@H]1O)=O)=O)=O)C(O)C(NCCC(NCCSC(CCC(O)=O)=O)=O)=O.[*]%91 A
153 5' diphosphate end ϒ 2000000552N ppN nucleotide O[C@H]1[C@H]%91O[C@H](COP(OP(=O)([O-])[O-])(=O)[O-])[C@H]1O.[*]%91 A
173 5' hydroxyl end ɀ 2000000550N 5'-OH-N nucleoside A
154 5' nicotinamide adenine dinucleotide Ξ 2000000255N NADpN nucleotide NC(c1ccc[n+]([C@@H]2O[C@H](COP([O-])(OP([O-])(OC[C@H]3O[C@@H]([n]4cnc5c(N)ncnc45)[C@H](O)[C@@H]3OP([O-])(OC[C@H]3O[C@@H]%91[C@H](O)[C@@H]3O)=O)=O)=O)[C@@H](O)[C@H]2O)c1)=O.[*]%91 A
147 5' triphosphate end ϖ 2000000553N pppN nucleotide O[C@@H]1[C@H](O)[C@@H](COP([O-])(OP([O-])(OP([O-])([O-])=O)=O)=O)O[C@@H]%911.[*]%91 A
2 5,2'-O-dimethylcytidine τ 2000000905C m5Cm nucleoside CO[C@H]1[C@H]([n]2c(=O)nc(N)c(C)c2)O[C@H](CO)[C@H]1O C
350 5,2'-O-dimethylcytidine-5'-monophosphate τ 2000905551C pm5Cm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cc(C)c(N)nc1=O C
122 5,2'-O-dimethyluridine Ħ 2000000905U m5Um nucleoside CO[C@H]1[C@H]([n]2c(=O)[nH]c(=O)c(C)c2)O[C@H](CO)[C@H]1O U
190 5,6-dihydrouridine-5'-monophosphate D 2000008551U pD nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C(NC(=O)CC1)=O)(=O)[O-] U
223 5-(O-methylaceto)-2-thio-2-deoxy-uridine-5'-monophosphate 3 2002521551U pmcm5s2U nucleotide COC(=O)Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
164 5-(carboxyhydroxymethyl)-2'-O-methyluridine methyl ester b 2000090522U mchm5Um nucleoside COC(C(O)c1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2OC)c(=O)[nH]c1=O)=O U
384 5-(carboxyhydroxymethyl)-2'-O-methyluridine methyl ester-5'-monophosphate b 2090522551U pmchm5Um nucleotide COC(=O)C(O)c1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2OC)c(=O)[nH]c1=O U
85 5-(carboxyhydroxymethyl)uridine methyl ester ɮ 2000000522U mchm5U nucleoside COC(C(c1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1)O)=O U
351 5-(carboxyhydroxymethyl)uridine methyl ester-5'-monophosphate ɮ 2000522551U pmchm5U nucleotide COC(=O)C(O)c1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
241 5-(carboxymethoxy) uridine-5'-monophosphate V 2000502551U pcmo5U nucleotide O[C@@H]1[C@@H](COP(=O)([O-])[O-])O[C@@H]([n]2c(=O)[nH]c(=O)c(OCC(=O)O)c2)[C@@H]1O U
254 5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) Ƣ 2000051551C phm5C nucleotide Nc1nc(=O)[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)cc1CO C
145 5-(isopentenylaminomethyl)-2'-O-methyluridine Ю 2000090583U inm5Um nucleoside CO[C@H]1[C@H]([n]2c(=O)[nH]c(=O)c(CNCC=C(C)C)c2)O[C@H](CO)[C@H]1O U
352 5-(isopentenylaminomethyl)-2'-O-methyluridine-5'-monophosphate Ю 2090583551U pinm5Um nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cc(CNCC=C(C)C)c(=O)[nH]c1=O U
146 5-(isopentenylaminomethyl)-2-thiouridine Ɲ 2000002583U inm5s2U nucleoside CC(=CCNCc1c(=O)[nH]c(=S)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1)C U
353 5-(isopentenylaminomethyl)-2-thiouridine-5'-monophosphate Ɲ 2002583551U pinm5s2U nucleotide CC(C)=CCNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
144 5-(isopentenylaminomethyl)uridine ¾ 2000000583U inm5U nucleoside CC(=CCNCc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1)C U
354 5-(isopentenylaminomethyl)uridine-5'-monophosphate ¾ 2000583551U pinm5U nucleotide CC(C)=CCNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
169 5-aminomethyl-2-geranylthiouridine Δ 2000021510U nm5ges2U nucleoside CC(C)=CCC/C(/C)=C/CSc1nc(=O)c(CN)c[n]1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O U
385 5-aminomethyl-2-geranylthiouridine-5'-monophosphate Δ 2021510551U pnm5ges2U nucleotide CC(C)=CCC/C(/C)=C/CSc1nc(=O)c(CN)c[n]1[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O U
62 5-aminomethyl-2-selenouridine π 2000020510U nm5se2U nucleoside NCc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=[Se])[nH]c1=O U
386 5-aminomethyl-2-selenouridine-5'-monophosphate π 2020510551U pnm5se2U nucleotide NCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=[Se])[nH]c1=O U
35 5-aminomethyl-2-thiouridine 2000002510U nm5s2U nucleoside NCc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
387 5-aminomethyl-2-thiouridine-5'-monophosphate 2002510551U pnm5s2U nucleotide NCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
115 5-aminomethyluridine 2000000510C nm5U nucleoside NCc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1 U
355 5-aminomethyluridine-5'-monophosphate 2000510551U pnm5U nucleotide NCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
163 5-carbamoylhydroxymethyluridine r 2000000531U nchm5U nucleoside NC(C(O)c1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[nH]c1=O)=O U
388 5-carbamoylhydroxymethyluridine-5'-monophosphate r 2000531551U pnchm5U nucleotide NC(=O)C(O)c1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
29 5-carbamoylmethyl-2'-O-methyluridine ~ 2000009053U ncm5Um nucleoside CO[C@H]1[C@H]([n]2cc(CC(N)=O)c(=O)[nH]c2=O)O[C@H](CO)[C@H]1O U
389 5-carbamoylmethyl-2'-O-methyluridine-5'-monophosphate ~ 2009053551U pncm5Um nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cc(CC(N)=O)c(=O)[nH]c1=O U
162 5-carbamoylmethyl-2-thiouridine l 2000000253U ncm5s2U nucleoside NC(Cc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=S)[nH]c1=O)=O U
390 5-carbamoylmethyl-2-thiouridine-5'-monophosphate l 2000253551U pncm5s2U nucleotide NC(=O)Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
43 5-carbamoylmethyluridine & 2000000053U ncm5U nucleoside NC(Cc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1)=O U
356 5-carbamoylmethyluridine-5'-monophosphate & 2000053551U pncm5U nucleotide NC(=O)Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
73 5-carboxyhydroxymethyluridine 2000000520U chm5U nucleoside OC[C@@H]1[C@@H](O)[C@@H](O)[C@H]([n]2c(=O)[nH]c(=O)c(C(C(=O)O)O)c2)O1 U
357 5-carboxyhydroxymethyluridine-5'-monophosphate 2000520551U pchm5U nucleotide O=C(O)C(O)c1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
11 5-carboxymethyl-2-thiouridine 2000002540U cm5s2U nucleoside OC(Cc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=S)[nH]c1=O)=O U
391 5-carboxymethyl-2-thiouridine-5'-monophosphate 2002540551U pcm5s2U nucleotide O=C(O)Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
23 5-carboxymethylaminomethyl-2'-O-methyluridine ) 2000009051U cmnm5Um nucleoside CO[C@H]1[C@H]([n]2cc(CNCC(O)=O)c(=O)[nH]c2=O)O[C@H](CO)[C@H]1O U
392 5-carboxymethylaminomethyl-2'-O-methyluridine-5'-monophosphate ) 2009051551U pcmnm5Um nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cc(CNCC(=O)O)c(=O)[nH]c1=O U
167 5-carboxymethylaminomethyl-2-geranylthiouridine f 2000002151U cmnm5ges2U nucleoside CC(C)=CCC/C(/C)=C/CSc1nc(=O)c(CNCC(O)=O)c[n]1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O U
393 5-carboxymethylaminomethyl-2-geranylthiouridine-5'-monophosphate f 2002151551U pcmnm5ges2U nucleotide CC(C)=CCC/C(/C)=C/CSc1nc(=O)c(CNCC(=O)O)c[n]1[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O U
54 5-carboxymethylaminomethyl-2-selenouridine 2000002051U cmnm5se2U nucleoside OC(CNCc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=[Se])[nH]c1=O)=O U
394 5-carboxymethylaminomethyl-2-selenouridine-5'-monophosphate 2002051551U pcmnm5se2U nucleotide O=C(O)CNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=[Se])[nH]c1=O U
45 5-carboxymethylaminomethyl-2-thiouridine $ 2000000251U cmnm5s2U nucleoside OC(CNCc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=S)[nH]c1=O)=O U
395 5-carboxymethylaminomethyl-2-thiouridine-5'-monophosphate $ 2000251551U pcmnm5s2U nucleotide O=C(O)CNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
87 5-carboxymethylaminomethyluridine ! 2000000051U cmnm5U nucleoside OC[C@@H]1[C@@H](O)[C@@H](O)[C@H]([n]2c(=O)[nH]c(=O)c(CNCC(=O)O)c2)O1 U
358 5-carboxymethylaminomethyluridine-5'-monophosphate ! 2000051551U pcmnm5U nucleotide O=C(O)CNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
44 5-carboxymethyluridine 2000000052U cm5U nucleoside OC[C@@H]1[C@@H](O)[C@@H](O)[C@H]([n]2c(=O)[nH]c(=O)c(CC(=O)O)c2)O1 U
359 5-carboxymethyluridine-5'-monophosphate 2000052551U pcm5U nucleotide O=C(O)Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
178 5-cyanomethyluridine Ѷ 2000000055U cnm5U nucleoside N#CCc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
396 5-cyanomethyluridine-5'-monophosphate Ѷ 2000055551U pcnm5U nucleotide N#CCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
104 5-formyl-2'-O-methylcytidine ° 2000009071C f5Cm nucleoside CO[C@H]1[C@H]([n]2cc(C=O)c(N)nc2=O)O[C@H](CO)[C@H]1O C
397 5-formyl-2'-O-methylcytidine-5'-monophosphate ° 2009071551C pf5Cm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cc(C=O)c(N)nc1=O C
31 5-formylcytidine > 2000000071C f5C nucleoside Nc1nc(=O)[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)cc1C=O C
232 5-formylcytidine 5'-(dihydrogen phosphate) > 2000071551C pf5C nucleotide Nc1nc(=O)[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)cc1C=O C
143 5-hydroxycytidine Ç 2000000050C ho5C nucleoside Nc1nc(=O)[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)cc1O C
398 5-hydroxycytidine-5'-monophosphate Ç 2000050551C pho5C nucleotide Nc1nc(=O)[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)cc1O C
119 5-hydroxymethylcytidine Ƣ 2000000051C hm5C nucleoside Nc1nc(=O)[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)cc1CO C
64 5-hydroxyuridine 2000000050U ho5U nucleoside OC[C@@H]1[C@@H](O)[C@@H](O)[C@H]([n]2c(=O)[nH]c(=O)c(O)c2)O1 U
360 5-hydroxyuridine-5'-monophosphate 2000050551U pho5U nucleotide O=c1[nH]c(=O)[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)cc1O U
80 5-methoxycarbonylmethyl-2'-O-methyluridine 2000090521U mcm5Um nucleoside CO[C@H]1[C@H]([n]2c(=O)[nH]c(=O)c(CC(OC)=O)c2)O[C@H](CO)[C@H]1O U
361 5-methoxycarbonylmethyl-2'-O-methyluridine-5'-monophosphate 2090521551U pmcm5Um nucleotide COC(=O)Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2OC)c(=O)[nH]c1=O U
68 5-methoxycarbonylmethyl-2-thiouridine 3 2000002521U mcm5s2U nucleoside COC(Cc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=S)[nH]c1=O)=O U
27 5-methoxycarbonylmethyluridine 1 2000000521U mcm5U nucleoside COC(Cc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1)=O U
362 5-methoxycarbonylmethyluridine-5'-monophosphate 1 2000521551U pmcm5U nucleotide COC(=O)Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
74 5-methoxyuridine 5 2000000501U mo5U nucleoside COc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1 U
363 5-methoxyuridine-5'-monophosphate 5 2000501551U pmo5U nucleotide COc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
3 5-methyl-2-thiouridine F 2000000025U m5s2U nucleoside Cc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
399 5-methyl-2-thiouridine-5'-monophosphate F 2000025551U pm5s2U nucleotide Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
168 5-methylaminomethyl-2-geranylthiouridine h 2000021511U mnm5ges2U nucleoside CC(C)=CCC/C(/C)=C/CSc1nc(=O)c(CNC)c[n]1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O U
400 5-methylaminomethyl-2-geranylthiouridine-5'-monophosphate h 2021511551U pmnm5ges2U nucleotide CNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(SC/C=C(\C)/CCC=C(C)C)nc1=O U
78 5-methylaminomethyl-2-selenouridine 2000020511U mnm5se2U nucleoside CNCc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=[Se])[nH]c1=O U
401 5-methylaminomethyl-2-selenouridine-5'-monophosphate 2020511551U pmnm5se2U nucleotide CNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=[Se])[nH]c1=O U
110 5-methylaminomethyl-2-thiouridine S 2000002511U mnm5s2U nucleoside CNCc1c[n]([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
402 5-methylaminomethyl-2-thiouridine-5'-monophosphate S 2002511551U pmnm5s2U nucleotide CNCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=S)[nH]c1=O U
129 5-methylaminomethyluridine { 2000000511U mnm5U nucleoside CNCc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1 U
18 5-methylcytidine ? 2000000005C m5C nucleoside Cc1c(N)nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1 C
186 5-methylcytidine-5'-monophosphate ? 2000005551C pm5C nucleotide Cc1c(N)nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)c1 C
17 5-methyldihydrouridine ρ 2000000058U m5D nucleoside CC1C(=O)NC(=O)N([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)C1 U
364 5-methyldihydrouridine-5'-monophosphate ρ 2000058551U pm5D nucleotide CC1CN([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)C(=O)NC1=O U
12 5-methyluridine T 2000000005U m5U nucleoside Cc1c(=O)[nH]c(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)c1 U
194 5-methyluridine-5'-monophosphate T 2000005551U pm5U nucleotide [C@H]1([n]2cc(C)c(=O)nc2=O)[C@H](O)[C@H](O)[C@@H](COP([O-])([O-])=O)O1 U
91 5-taurinomethyl-2-thiouridine ƕ 2000000254U tm5s2U nucleoside OC[C@H]1O[C@@H]([n]2cc(CNCCS(O)(=O)=O)c(=O)[nH]c2=S)[C@H](O)[C@@H]1O U
403 5-taurinomethyl-2-thiouridine-5'-monophosphate ƕ 2000254551U ptm5s2U nucleotide O=c1[nH]c(=S)[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)cc1CNCCS(=O)(=O)O U
21 5-taurinomethyluridine ʭ 2000000054U tm5U nucleoside OC[C@H]1O[C@@H]([n]2cc(CNCCS(O)(=O)=O)c(=O)[nH]c2=O)[C@H](O)[C@@H]1O U
404 5-taurinomethyluridine-5'-monophosphate ʭ 2000054551U ptm5U nucleotide O=c1[nH]c(=O)[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)cc1CNCCS(=O)(=O)O U
192 6N-dimethyladenosine-5'-monophosphate ζ 2000066551A pm6,6A nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N(C)C)(=O)[O-] A
71 7-aminocarboxypropyl-demethylwyosine ¥ 2000000047C yW-86 nucleoside Cc1nc2[nH]c3c(c(=O)[n]2c1CCC(N)C(O)=O)nc[n]3[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O G
405 7-aminocarboxypropyl-demethylwyosine-5'-monophosphate ¥ 2000047551G pyW-86 nucleotide Cc1nc2[nH]c3c(c(=O)[n]2c1CCC(N)C(=O)O)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
77 7-aminocarboxypropylwyosine Ω 2000000347G yW-72 nucleoside C[n]1c2c(nc[n]2[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[n]2c1nc(C)c2CCC(N)C(O)=O G
112 7-aminocarboxypropylwyosine methyl ester 2000000348G yW-58 nucleoside C[n]1c2nc(C)c(CCC(N)C(OC)=O)[n]2c(=O)c2nc[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c12 G
407 7-aminocarboxypropylwyosine methyl ester-5'-monophosphate 2000348551G pyW-58 nucleotide COC(=O)C(N)CCc1c(C)nc2[n](C)c3c(c(=O)[n]12)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
406 7-aminocarboxypropylwyosine-5'-monophosphate Ω 2000347551G pyW-72 nucleotide Cc1nc2[n](C)c3c(c(=O)[n]2c1CCC(N)C(=O)O)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
61 7-aminomethyl-7-carbaguanine 2000101000G preQ1base base Nc1[nH]c(=O)c2c([nH]cc2CN)n1 G
123 7-aminomethyl-7-deazaguanosine 2000000101G preQ1 nucleoside Nc1[nH]c(=O)c2c(CN)c[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c2n1 G
408 7-aminomethyl-7-deazaguanosine-5'-monophosphate 2000101551G ppreQ1 nucleotide NCc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c2nc(N)[nH]c(=O)c12 G
95 7-cyano-7-carbaguanine ψ 200100000G preQ0base base Nc1[nH]c(=O)c2c(c[nH]c2n1)C#N G
120 7-cyano-7-deazaguanosine φ 2000000100G preQ0 nucleoside Nc1[nH]c(=O)c2c(c[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c2n1)C#N G
409 7-cyano-7-deazaguanosine-5'-monophosphate φ 2000100551G ppreQ0 nucleotide N#Cc1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c2nc(N)[nH]c(=O)c12 G
116 7-methylguanosine 7 2000000007G m7G nucleoside [C@@H]1([n]2c[n+](C)c3c2nc(nc3=O)N)O[C@H](CO)[C@@H](O)[C@H]1O G
203 7N-methyl-8-hydroguanosine-5'-monophosphate 7 2000007551G pm7G nucleotide C[n+]1c2c(nc(nc2=O)N)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)c1 G
131 8-methyladenosine â 2000000008A m8A nucleoside Cc1nc2c(N)ncnc2[n]1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
410 8-methyladenosine-5'-monophosphate â 2000008551A pm8A nucleotide Cc1nc2c(N)ncnc2[n]1[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O A
204 N(1)-methyladenosine 5'-monophosphate Ѣ 2000001551A pm1A nucleotide C[n]1c(=N)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)cn2)nc1 A
200 N(4)-acetylcytidine-5'-monophosphate M 2000042551C pac4C nucleotide CC(Nc1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)cc1)=O C
102 N2,2'-O-dimethylguanosine γ 2000000902G m2Gm nucleoside CO[C@H]1[C@H]([n]2cnc3c2nc([nH]c3=O)NC)O[C@H](CO)[C@H]1O G
428 N2,2'-O-dimethylguanosine-5'-monophospate γ 2000902551G pm2Gm nucleotide CNc1nc2c(nc[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2OC)c(=O)[nH]1 G
142 N2,7,2'-O-trimethylguanosine æ 2000009027G m2,7Gm nucleoside [C@H]1([n]2c[n+](C)c3c2nc(nc3=O)NC)[C@H](OC)[C@H](O)[C@@H](CO)O1 G
442 N2,7,2'-O-trimethylguanosine-5'-monophosphate 2009027551G pm2,7Gm nucleotide CNc1nc(=O)c2c([n]([C@H]3[C@H](OC)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)c[n+]2C)n1 G
4 N2,7-dimethylguanosine 2000000027G m2,7G nucleoside CNc1nc(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)c[n+]2C)n1 G
133 N2,7-dimethylguanosine cap (cap DMG) ® 2000279553N m2,7GpppN nucleotide CNc1nc(=O)c2c([n](c[n+]2C)[C@@H]2O[C@H](COP([O-])(OP([O-])(OP([O-])(OC[C@H]3O[C@@H]%91[C@H](O)[C@@H]3O)=O)=O)=O)[C@@H](O)[C@H]2O)[nH]1.[*]%91 A
440 N2,7-dimethylguanosine-5'-monophosphate æ 2000004553N pm2,7G nucleotide CNc1nc(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)c[n+]2C)n1 G
40 N2,N2,2'-O-trimethylguanosine | 2000009022G m2,2Gm nucleoside CN(C)c1[nH]c(=O)c2nc[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3OC)c2n1 G
429 N2,N2,2'-O-trimethylguanosine-5'-monophospate | 2009022551G pm2,2Gm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cnc2c(=O)[nH]c(N(C)C)nc12 G
111 N2,N2,7-trimethylguanosine 2000000227G m2,2,7G nucleoside CN(c1nc(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)c[n+]2C)n1)C G
134 N2,N2,7-trimethylguanosine cap (cap TMG) 2002279553N m2,2,7GpppN nucleotide CN(C)c1nc(=O)c2c([n](c[n+]2C)[C@@H]2O[C@H](COP([O-])(OP([O-])(OP([O-])(OC[C@H]3O[C@@H]%91[C@H](O)[C@@H]3O)=O)=O)=O)[C@@H](O)[C@H]2O)[nH]1.[*]%91 A
441 N2,N2,7-trimethylguanosine-5'-monophosphate 2000227551G pm2,2,7G nucleotide CN(c1nc(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)c[n+]2C)n1)C G
13 N2,N2-dimethylguanosine R 2000000022G m2,2G nucleoside CN(C)c1[nH]c(=O)c2nc[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c2n1 G
198 N2-dimethylguanosine-5'-monophosphate R 2000022551G pm2,2G nucleotide CN(C)c1nc2c(nc[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
36 N2-methylguanosine L 2000000002G m2G nucleoside CNc1[nH]c(=O)c2nc[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c2n1 G
39 N4,2'-O-dimethylcytidine λ 2000000904C m4Cm nucleoside CO[C@H]1[C@H]([n]2ccc(NC)nc2=O)O[C@H](CO)[C@H]1O C
69 N4,N4,2'-O-trimethylcytidine β 2000009044C m4,4Cm nucleoside CO[C@H]1[C@H]([n]2c(=O)nc(N(C)C)cc2)O[C@H](CO)[C@H]1O C
427 N4,N4,2'-O-trimethylcytidine-5'-monophospate β 2009044551C pm4,4Cm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1ccc(N(C)C)nc1=O C
15 N4,N4-dimethylcytidine μ 2000000044C m4,4C nucleoside CN(c1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)cc1)C C
106 N4-acetyl-2'-O-methylcytidine 2000009042C ac4Cm nucleoside CO[C@H]1[C@H]([n]2c(=O)nc(NC(=O)C)cc2)O[C@H](CO)[C@H]1O C
81 N4-acetylcytidine M 2000000042C ac4C nucleoside CC(Nc1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)cc1)=O C
9 N4-methylcytidine ν 2000000004C m4C nucleoside CNc1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)cc1 C
82 N6,2'-O-dimethyladenosine χ 2000000906A m6Am nucleoside CO[C@H]1[C@H]([n]2cnc3c2ncnc3NC)O[C@H](CO)[C@H]1O A
430 N6,2'-O-dimethyladenosine-5'-monophospate χ 2000906551A pm6Am nucleotide CNc1ncnc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1OC A
124 N6,N6,2'-O-trimethyladenosine η 2000009066A m6,6Am nucleoside CN(C)c1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1OC A
431 N6,N6,2'-O-trimethyladenosine-5'-monophospate η 2009066551A pm6,6Am nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cnc2c(N(C)C)ncnc12 A
41 N6,N6-dimethyladenosine ζ 2000000066A m6,6A nucleoside CN(C)c1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
10 N6-(cis-hydroxyisopentenyl)adenosine 2000000060A io6A nucleoside CC(CO)=CCNc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
432 N6-(cis-hydroxyisopentenyl)adenosine-5'-monophospate 2000060551A pio6A nucleotide CC(=CCNc1ncnc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O)CO A
125 N6-acetyladenosine 2000000064A ac6A nucleoside CC(Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=O A
433 N6-acetyladenosine-5'-monophospate 2000064551A pac6A nucleotide CC(=O)Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O A
177 N6-formyladenosine Ϩ 2000000067A f6A nucleoside OC[C@H]1O[C@@H]([n]2cnc3c(NC=O)ncnc23)[C@H](O)[C@@H]1O A
434 N6-formyladenosine-5'-monophospate Ϩ 2000067551A pf6A nucleotide O=CNc1ncnc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O A
114 N6-glycinylcarbamoyladenosine 2000000065A g6A nucleoside OC(CNC(Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=O)=O A
435 N6-glycinylcarbamoyladenosine-5'-monophosphate 2000065551A pg6A nucleotide O=C(O)CNC(=O)Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O A
176 N6-hydroxymethyladenosine Ϫ 2000000068A hm6A nucleoside O[C@H]1[C@H]([n]2cnc3c(NCO)ncnc23)O[C@H](CO)[C@H]1O A
436 N6-hydroxymethyladenosine-5'-monophosphate Ϫ 2000068551A phm6A nucleotide O=P([O-])([O-])OC[C@H]1O[C@@H]([n]2cnc3c(NCO)ncnc23)[C@H](O)[C@@H]1O A
19 N6-hydroxynorvalylcarbamoyladenosine 2000000063A hn6A nucleoside CCC(O)C(NC(Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=O)C(O)=O A
437 N6-hydroxynorvalylcarbamoyladenosine-5'-monophosphate 2000063551A phn6A nucleotide CCC(O)C(NC(=O)Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O)C(=O)O A
253 N6-isopentenyl-adenosine-5'-monophosphate Ч 2000061551A pi6A nucleotide CC(=CCNc1c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)cn2)ncn1)C A
56 N6-isopentenyladenosine Ч 2000000061A i6A nucleoside CC(C)=CCNc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
16 N6-methyl-N6-threonylcarbamoyladenosine E 2000000662A m6t6A nucleoside C[C@H]([C@@H](C(=O)O)NC(Nc1c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)cn2)ncn1)=O)O A
302 N6-methyl-N6-threonylcarbamoyladenosine-5'-monophosphate E 2000662551A pm6t6A nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N(C)C(=O)N[C@H](C(O)=O)[C@H](O)C)(=O)[O-] A
338 N6-methyl-adenosine pentaphosphate 5' cap (cap Ap5N) Ϛ 2000064555N m6ApppppN nucleotide A
337 N6-methyl-adenosine tetraphosphate 5' cap (cap Ap4N) Ϙ 2000064554N m6AppppN nucleotide A
336 N6-methyl-adenosine triphosphate 5' cap (cap A) Ϯ 2000064553N m6ApppN nucleotide A
96 N6-methyladenosine Ж 2000000006A m6A nucleoside CNc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
211 N6-methyladenosine-5'-monophosphate Ж 2000006551A pm6A nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2NC)(=O)[O-] A
130 N6-threonylcarbamoyladenosine 6 2000000062A t6A nucleoside CC(O)C(N)C(NC(Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=O)=O A
231 N6-threonylcarbamoyladenosine-5'-monophosphate 6 2000062551A pt6A nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2NC(=O)N[C@H](C(O)=O)[C@H](O)C)(=O)[O-] A
339 N7-methyl-guanosine tetraphosphate 5' cap (cap m7Gp4N) Ϟ 2000079554N m7GppppN nucleotide A
132 N7-methyl-guanosine cap (cap 0) © 2000079553N m7GpppN nucleotide C[n+]1c[n]([C@@H]2O[C@H](COP([O-])(OP([O-])(OP([O-])(OC[C@H]3O[C@@H]%91[C@H](O)[C@@H]3O)=O)=O)=O)[C@@H](O)[C@H]2O)c2c1c(nc(N)[nH]2)=O.[*]%91 A
201 O2'-methylcytidine-5'-monophosphate B 2000090551C pCm nucleotide CO[C@H]1[C@H]([n]2c(=O)nc(N)cc2)O[C@H](COP(=O)([O-])[O-])[C@H]1O C
193 O2'-methylguanosine-5'-monophosphate # 2000090551G pGm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1cnc2c(=O)[nH]c(N)nc12 G
205 O2'-methyluridine 5'-monophosphate J 2000090551U pUm nucleotide CO[C@@H]1[C@H](O)[C@@H](COP(=O)([O-])[O-])O[C@H]1[n]1ccc(=O)[nH]c1=O U
456 [(2R,3S,5S)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-propylphosphonamidicacid 40000035551U MU3 nucleotide CCCNP(=O)(O)OC[C@H]2O[C@H](n1cc(C)c(=O)[nH]c1=O)C[C@@H]2O U
257 [(2~{R},3~{R},4~{R},5~{R})-5-(4-acetamido-2-oxidanylidene-pyrimidin-1-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate 2009042551C pac4Cm nucleotide CO[C@H]1[C@H]([n]2c(=O)nc(NC(=O)C)cc2)O[C@H](COP(=O)([O-])[O-])[C@H]1O C
250 [(2~{R},3~{S},4~{R},5~{R})-5-[4-(dimethylamino)-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate μ 2000044551C pm4,4C nucleotide CN(c1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)cc1)C C
109 adenosine A A A nucleoside Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O A
335 adenosine pentaphosphate 5' cap (cap Ap5N) Ϭ 2000004555N ApppppN nucleotide A
334 adenosine tetraphosphate 5' cap (cap Ap4N) IJ 2000004554N AppppN nucleotide A
333 adenosine triphosphate 5' cap (cap A) Ϩ 2000004553N ApppN nucleotide A
310 adenosine-3',5'-diphosphate 2000033551A pAp nucleotide [O-]P(O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP(=O)([O-])[O-])[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] A
317 adenosine-5'-diphosphate 2000000552A ppA nucleotide [O-][P@@](OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N)(OP([O-])(=O)[O-])=O A
444 adenosine-5'-monophosphate A A pA nucleotide Nc1c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)cn2)ncn1 A
215 adenosine-5'-phosphate-2',3'-cyclic phosphate Ҕ 2000003377A pA2'3'cp nucleotide [O-][P@@]1(O[C@H]2[C@@H](O[C@H](COP(=O)([O-])[O-])[C@H]2O1)[n]1c[n]c2c1[n]c[n]c2N)=O A
233 adenosine-5'-triphosphate ƿ 2000000553A pppA nucleotide [O-][P@](OP(=O)([O-])[O-])(O[P@]([O-])(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N)=O)=O A
141 agmatidine ¿ 2000000020C C+ nucleoside NC(NCCCCNc1nc(=N)cc[n]1[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=N C
411 agmatidine-5'-monophosphate ¿ 2000020551C pC+ nucleotide N=C(N)NCCCCNc1nc(=N)cc[n]1[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O C
170 alpha-dimethylmonophosphate 5' cap Ѽ 2000002551N mmpN nucleotide COP(OC)(OC[C@H]1O[C@@H]%91[C@H](O)[C@@H]1O)=O.[*]%91 A
171 alpha-methylmonophosphate 5' cap Ѿ 2000001551N mpN nucleotide COP([O-])(OC[C@H]1O[C@@H]%91[C@H](O)[C@@H]1O)=O.[*]%91 A
140 any ribonucleoside residue . 2000000000N N nucleoside A
99 archaeosine ( 2000000103G G+ nucleoside Nc1[nH]c(=O)c2c(c[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c2n1)C(N)=N G
412 archaeosine-5'-monophosphate ( 2000103551G pG+ nucleotide N=C(N)c1c[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c2nc(N)[nH]c(=O)c12 G
175 cyclic N6-threonylcarbamoyladenosine e 2000000069A ct6A nucleoside CC(O)C1NC(=Nc2ncnc3c2nc[n]3[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)OC1=O A
413 cyclic N6-threonylcarbamoyladenosine-5'-monophosphate e 2000069551A pct6A nucleotide CC(O)C1NC(=Nc2ncnc3c2nc[n]3[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)OC1=O A
46 cytidine C C C nucleoside Nc1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)cc1 C
300 cytidine-5'-monophosphate C C pC nucleotide Nc1nc(=O)[n]([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)cc1 C
209 cytidine-5'-phosphate-2',3'-cyclic phosphate Ҏ 2000003377C pC2'3'cp nucleotide Nc1cc[n]([C@H]2[C@@H]3O[P@]([O-])(=O)O[C@@H]3[C@@H](COP([O-])([O-])=O)O2)c(=O)n1 C
14 dihydrouridine D 2000000008U D nucleoside OC[C@H]1O[C@@H](N2CCC(=O)NC2=O)[C@H](O)[C@@H]1O U
6 epoxyqueuosine ς 2000000102G oQ nucleoside Nc1[nH]c(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)cc2CN[C@@H]2[C@@H](O)[C@@H](O)C3C2O3)n1 G
414 epoxyqueuosine-5'-monophosphate ς 2000102551G poQ nucleotide Nc1nc2c(c(CN[C@H]3C4OC4[C@H](O)[C@@H]3O)c[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
86 galactosyl-queuosine 9 2000000104G galQ nucleoside Nc1[nH]c(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)cc2CN[C@@H]2[C@@H](O[C@H]3C(O)[C@H](O)[C@@H](O)C(CO)O3)[C@@H](O)C=C2)n1 G
415 galactosyl-queuosine-5'-monophosphate 9 2000104551G pgalQ nucleotide Nc1nc2c(c(CN[C@H]3C=C[C@H](O)[C@@H]3O[C@@H]3OC(CO)[C@H](O)[C@@H](O)C3O)c[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
135 gamma-methyltriphosphate 5' cap § 2000001553N mpppN nucleotide COP([O-])(OP([O-])(OP([O-])(OC[C@H]1O[C@@H]%91[C@H](O)[C@@H]1O)=O)=O)=O.[*]%91 A
42 glutamyl-queuosine 2000000105G gluQ nucleoside NC(C(O[C@@H]1[C@@H](NCc2c3c(nc(nc3=O)N)[n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)c2)C=C[C@@H]1O)=O)CCC(=O)O G
416 glutamyl-queuosine-5'-monophosphate 2000105551G pgluQ nucleotide Nc1nc2c(c(CN[C@H]3C=C[C@H](O)[C@@H]3OC(=O)C(N)CCC(=O)O)c[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
238 guanoside-5'-phosphate-2',3'-cyclic phosphate Ґ 2000003377G pG2'3'cp nucleotide [C@H]1([n]2cnc3c2nc(nc3=O)N)[C@@H]2O[P@]([O-])(=O)O[C@@H]2[C@@H](COP([O-])([O-])=O)O1 G
38 guanosine G G G nucleoside Nc1[nH]c(=O)c2nc[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c2n1 G
161 guanosine added to any ribonucleotide Ʉ 2000000551G2000000511N pG(pN) nucleotide Nc1[nH]c2c(nc[n]2[C@H]2[C@H](O)[C@H](OP(OC[C@@H]3[C@@H](O)[C@@H](O)[C@H]%91O3)(=O)[O-])[C@@H](COP(=O)([O-])[O-])O2)c(=O)n1.[*]%91 A
148 guanosine triphosphate 5' cap (cap G) ϑ 2000009553N GpppN nucleotide Nc1nc(=O)c2c([n](cn2)[C@@H]2O[C@H](COP([O-])(OP([O-])(OP([O-])(OC[C@H]3O[C@@H]%91[C@H](O)[C@@H]3O)=O)=O)=O)[C@@H](O)[C@H]2O)[nH]1.[*]%91 A
259 guanosine-3',5'-diphosphate Ⱥ 2000033551G pGp nucleotide [C@H]1([n]2cnc3c2nc(nc3=O)N)[C@H](O)[C@H](OP([O-])([O-])=O)[C@@H](COP([O-])([O-])=O)O1 G
218 guanosine-5'-diphosphate Ƈ 2000000552G ppG nucleotide [O-][P@@](OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2C(=O)NC(N)=Nc21)(OP([O-])(=O)[O-])=O G
235 guanosine-5'-monophosphate G G pG nucleotide Nc1nc2c(nc[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
202 guanosine-5'-triphosphate Ȝ 2000000553G pppG nucleotide [C@H]1([n]2cnc3c2nc(nc3=O)N)[C@H](O)[C@H](O)[C@@H](CO[P@](O[P@@]([O-])(=O)OP([O-])([O-])=O)(=O)[O-])O1 G
181 hydroxy-N6-threonylcarbamoyladenosine « 2000002165A ht6A nucleoside OC(C(NC(Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O)=O)C(O)CO)=O A
417 hydroxy-N6-threonylcarbamoyladenosine-5'-monophosphate « 2002165551A pht6A nucleotide O=C(Nc1ncnc2c1nc[n]2[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O)NC(C(=O)O)C(O)CO A
97 hydroxywybutosine 2000034830G OHyW nucleoside C[n]1c2c(nc[n]2[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[n]2c1nc(C)c2CC(O)C(NC(OC)=O)C(OC)=O G
418 hydroxywybutosine-5'-monophosphate 2034830551G pOHyW nucleotide COC(=O)NC(C(=O)OC)C(O)Cc1c(C)nc2[n](C)c3c(c(=O)[n]12)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
113 inosine I 2000000009A I nucleoside OC[C@@H]1[C@@H](O)[C@@H](O)[C@H]([n]2c3nc[nH]c(=O)c3nc2)O1 A
217 inosine-5'-monophosphate I 2000009551A pI nucleotide O[C@H]1[C@@H](O)[C@H]([n]2c3ncnc(=O)c3nc2)O[C@@H]1COP(=O)([O-])[O-] A
89 isowyosine 2000000042G imG2 nucleoside Cc1nc2[nH]c3c(c(=O)[n]2c1C)nc[n]3[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O G
419 isowyosine-5'-monophosphate 2000042551G pimG2 nucleotide Cc1nc2[nH]c3c(c(=O)[n]2c1C)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
90 mannosyl-queuosine 8 2000000106G manQ nucleoside Nc1nc(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)cc2CN[C@@H]2[C@@H](O[C@H]3C(O)[C@H](O)[C@H](O)C(CO)O3)[C@@H](O)C=C2)n1 G
420 mannosyl-queuosine-5'-monophosphate 8 2000106551G pmanQ nucleotide Nc1nc2c(c(CN[C@H]3C=C[C@H](O)[C@@H]3O[C@@H]3OC(CO)[C@@H](O)[C@@H](O)C3O)c[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
160 methylated undermodified hydroxywybutosine y 2000003480G OHyWy nucleoside C[n]1c2nc(C)c(CC(O)C(N)C(OC)=O)[n]2c(=O)c2nc[n]([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c12 G
421 methylated undermodified hydroxywybutosine-5'-monophosphate y 2003480551G pOHyWy nucleotide COC(=O)C(N)C(O)Cc1c(C)nc2[n](C)c3c(c(=O)[n]12)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
59 methylwyosine 2000000342G mimG nucleoside Cc1c(C)[n]2c([n](c3c(c2=O)nc[n]3[C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)C)n1 G
365 methylwyosine-5'-monophosphate 2000342551G pmimG nucleotide Cc1nc2[n](C)c3c(c(=O)[n]2c1C)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
121 peroxywybutosine W 2000034832G o2yW nucleoside C[n]1c2c(nc[n]2[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[n]2c1nc(C)c2CC(OO)C(NC(OC)=O)C(OC)=O G
422 peroxywybutosine-5'-monophosphate W 2034832551G po2yW nucleotide COC(=O)NC(C(=O)OC)C(Cc1c(C)nc2[n](C)c3c(c(=O)[n]12)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O)OO QtRNA
118 pseudouridine P 2000000009U Y nucleoside OC[C@H]1O[C@@H](c2c[nH]c(=O)[nH]c2=O)[C@H](O)[C@@H]1O U
185 pseudouridine-5'-monophosphate P 2000009551U pY nucleotide O=c1[nH]cc([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 U
105 queuine 2000010000G Qbase base NC1NC(=O)c2c(c[nH]c2N=1)CN[C@@H]1[C@@H](O)[C@@H](O)C=C1 G
65 queuosine Q 2000000010G Q nucleoside Nc1[nH]c(=O)c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](CO)O3)cc2CN[C@@H]2[C@@H](O)[C@@H](O)C=C2)n1 G
423 queuosine-5'-monophospate Q 2000042551G pQ nucleotide Nc1nc2c(c(CN[C@H]3C=C[C@H](O)[C@@H]3O)c[n]2[C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 G
93 undermodified hydroxywybutosine š 2000003470G OHyWx nucleoside C[n]1c2c(nc[n]2[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[n]2c1nc(C)c2CC(O)C(N)C(O)=O G
424 undermodified hydroxywybutosine-5'-monophospate š 2003470551G pOHyWx nucleotide Cc1nc2[n](C)c3c(c(=O)[n]2c1CC(O)C(N)C(=O)O)nc[n]3[C@@H]1O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]1O G
165 unknown 5' monophosphate ribonucleotide m 2000000551N pN nucleotide O[C@@H]1[C@H](O)[C@@H](COP([O-])([O-])=O)O[C@@H]%911.[*]%91 A
98 unknown modification Ѯ 2000000000X xX nucleoside - X
72 unknown modified adenosine H 2000000999A xA nucleoside A
70 unknown modified cytidine Ѵ 2000000999C xC nucleoside - C
66 unknown modified guanosine ʆ 2000000999G xG nucleoside - G
76 unknown modified uridine N 2000000999U xU nucleoside - U
25 unknown nucleoside 2'-O-methylated Ѩ 2000000090X Xm nucleoside - X
60 uridine U U U nucleoside OC[C@H]1O[C@@H]([n]2ccc(=O)[nH]c2=O)[C@H](O)[C@@H]1O U
47 uridine 5-oxyacetic acid V 2000000502U cmo5U nucleoside OC[C@@H]1[C@@H](O)[C@@H](O)[C@H]([n]2c(=O)[nH]c(=O)c(OCC(=O)O)c2)O1 U
58 uridine 5-oxyacetic acid methyl ester υ 2000000503U mcmo5U nucleoside COC(COc1c[n](C2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[nH]c1=O)=O U
425 uridine 5-oxyacetic acid methyl ester-5'-monophospate υ 2000503551U pmcmo5U nucleotide COC(=O)COc1c[n](C2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]c1=O U
255 uridine-5'-monophosphate U U pU nucleotide O=c1cc[n]([C@@H]2O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]2O)c(=O)[nH]1 U
268 uridine-5'-monophosphate-2',3'-cyclic phosphate Ҋ 2003377551U pU2'3'cp nucleotide [O-]P1(O[C@H]2[C@@H](O[C@H](COP(=O)([O-])[O-])[C@H]2O1)N1C(NC(=O)C=C1)=O)=O U
30 wybutosine Y 2000003483G yW nucleoside COC(NC(C(OC)=O)CCc1[n]2c([n](c3c(c2=O)nc[n]3[C@H]2[C@H](O)[C@H](O)[C@@H](CO)O2)C)nc1C)=O G
213 wybutosine-5'-monophosphate Y 2003483551G pyW nucleotide COC(N[C@@H](C(OC)=O)CCc1[n]2c([n](c3c(c2=O)nc[n]3[C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)C)nc1C)=O G
244 wybutosine[C15(S)]-5'-monophosphate ϓ 2034831551G pyyW nucleotide COC(N[C@H](C(OC)=O)CCc1[n]2c([n](c3c(c2=O)nc[n]3[C@H]2[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O2)C)nc1C)=O G
139 wyosine 2000000034G imG nucleoside C[n]1c2c(nc[n]2[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)[n]2cc(C)nc12 G
426 wyosine-5'-monophospate 2000034551G pimG nucleotide Cc1c[n]2c(=O)c3nc[n]([C@@H]4O[C@H](COP(=O)([O-])[O-])[C@@H](O)[C@H]4O)c3[n](C)c2n1 G
ID Name RNAMods code MODOMICS code Short Name Moiety type SMILES Reference NucleoBase
293 ((2R,3S,4R,5S)-5-(2,6-diamino-9H-purin-9-YL)-3,4-dihydroxy-tetrahydrofuran-2-YL)methyl dihydrogen phosphate 2000000052X N6G nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c(N)[n]c2N)(=O)[O-] Unknown
264 ((2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3-(2- ((((2R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)- 3,4-dihydroxytetrahydrofuran-2-yl)methyl)amino)-2-oxoethyl)-4- hydroxytetrahydrofuran-2-yl)methyl phosphate 3000000075U URU nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1CC(NC[C@H]1O[C@@H](N2C(=O)NC(=O)C=C2)[C@H](O)[C@@H]1O)=O)N1C(NC(=O)C=C1)=O)(=O)[O-] Uridine
309 (1S)-1,4-anhydro-1-(1-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-xylitol 3000000048X M1Y nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@H]1O)C1C(NC(=O)N(C=1)C)=O)(=O)[O-] Unknown
246 (1S)-1,4-anhydro-1-(2,4-difluoro-5-methylphenyl)-5-O-phosphono-D-ribitol 2000000053X NF2 nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)c1c(F)cc(F)c(c1)C)(=O)[O-] Unknown
225 (1S)-1,4-anhydro-1-(3-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol 2000000008X 3TD nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)C1=CNC(=O)N(C1=O)C)(=O)[O-] Unknown
286 (2~{R})-2-azanyl-4-[5-[(2~{S},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-3-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]butanoic acid 333000012Y B8N nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)C1C(N(CC[C@@H](N)C(O)=O)C(=O)N(C=1)C)=O)(=O)[O-] Uridine
260 (5S)-5-{3-[(3S)-3-amino-3-carboxypropyl]-1-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl}-2,5-anhydro-1-O-phosphono-L-arabinitol 3000000028X C4J nucleotide [O-]P(OC[C@@H]1O[C@H]([C@H](O)[C@@H]1O)C1C(N(CC[C@H](N)C(O)=O)C(=O)N(C=1)C)=O)(=O)[O-] Unknown
308 (5S,6R)-5-fluoro-6-hydroxy-pseudouridine-5'-monophosphate 3000000035X FHU nucleotide [O-]P(OC[C@H]1O[C@@H]([C@@]2(F)C(=O)NC(=O)N[C@@H]2O)[C@H](O)[C@@H]1O)(=O)[O-] Unknown
245 (D)-2'-methylselenyl-2'-deoxycytidine-5'-phosphate 3000000084C CSL nucleotide Nc1cc[n]([C@@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]2[Se]C)c(=O)n1 Cytidine
307 (E)-N-{[4-oxo-1-(5-O-phosphono-beta-D-arabinofuranosyl)-2-thioxo-1,2,3,4-tetrahydropyrimidin-5-yl]methylidene}glycin 3000000003X 1RN nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)N1C=C(/C=N/CC(O)=O)C(NC1=S)=O)(=O)[O-] Unknown
272 1-(2,6-dideoxy-2-fluoro-5-O-phosphono-alpha-L-talofuranosyl)pyrimidine-2,4(1H,3H)-dione 3000000067U U5M nucleotide [O-]P(O[C@@H](C)[C@H]1O[C@@H](N2C(=O)NC(=O)C=C2)[C@H](F)[C@@H]1O)(=O)[O-] Uridine
284 1-(2,6-dideoxy-2-fluoro-5-O-phosphono-beta-D-allofuranosyl)pyrimidine-2,4(1H,3H)-dione 3000000068U U5R nucleotide [O-]P(O[C@H](C)[C@H]1O[C@@H](N2C(=O)NC(=O)C=C2)[C@H](F)[C@@H]1O)(=O)[O-] Uridine
322 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5-methyl-2-selanylpyrimidin-4(1H)-one 1000000076X US3 nucleotide [O-]P(OC[C@H]1O[C@H](C[C@@H]1O)N1C([SeH])=NC(=O)C(=C1)C)(=O)[O-] Unknown
278 1-(5-O-phosphono-beta-D-ribofuranosyl)-3-(1H-1,2,3-triazol-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 2000000014X 7AT nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1[n]c(c2c1[n]c[n]c2N)-c1[nH][n][n]c1)(=O)[O-] Unknown
229 1-(5-O-phosphono-beta-D-ribofuranosyl)-4-selanylpyrimidin-2(1H)-one 2000000077X US5 nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C(N=C([SeH])C=C1)=O)(=O)[O-] Unknown
196 1-(beta-D-ribofuranosyl)-pyridin-4-one-5'-phosphate 2000000055X ONE nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=CC(=O)C=C1)(=O)[O-] Unknown
197 1-(beta-D-ribofuranosyl)-pyrimidin-2-one-5'-phosphate 2000000058X PYO nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C(N=CC=C1)=O)(=O)[O-] Unknown
288 1-{2,5-dideoxy-2-fluoro-4-[(phosphonooxy)methyl]-alpha-L-lyxofuranosyl}pyrimidine-2,4(1H,3H)-dione 3000000066U U4M nucleotide [O-]P(OC[C@]1(O[C@@H](N2C(=O)NC(=O)C=C2)[C@H](F)[C@@H]1O)C)(=O)[O-] Uridine
306 2'-(N-acetamide)-cytidine-5'-monophosphate 3000000049C M5M nucleotide [O-]P(OC[C@H]1O[C@@H](N2C(=O)N=C(N)C=C2)[C@@H]([C@@H]1O)NC(=O)C)(=O)[O-] Cytidine
269 2'-F,4'-beta-OMe Uridine 5'-(dihydrogen phosphate) 3000000070U UFB nucleotide [O-]P(OC[C@@]1(O[C@@H](N2C(=O)NC(=O)C=C2)[C@H](F)[C@@H]1O)OC)(=O)[O-] Uridine
280 2'-F-4'-OMe uridine 5'-monophosphate 3000000072U UMO nucleotide [O-]P(OC[C@]1(O[C@@H](N2C(=O)NC(=O)C=C2)[C@H](F)[C@@H]1O)OC)(=O)[O-] Uridine
273 2'-OMe,4'beta-OMe uridine 5'-(dihydrogen phosphate) 3000000074U UOB nucleotide [O-]P(OC[C@]1(OC)O[C@@H](N2C(=O)NC(=O)C=C2)[C@@H]([C@@H]1O)OC)(=O)[O-] Uridine
283 2'-SE-methyl-2'-selenoguanosine 5'-(dihydrogen phosphate) 3000000078G XUG nucleotide [O-]P(OC[C@H]1O[C@@H]([n]2c3N=C(N)NC(=O)c3[n]c2)[C@@H]([C@@H]1O)[Se]C)(=O)[O-] Guanosine
242 2'-amine-cytidine-5'-monophosphate 3000000017C A5M nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](N)[C@@H]1O)N1C(N=C(N)C=C1)=O)(=O)[O-] Cytidine
266 2'-amino-2'-deoxyadenosine 3000000004A 2AD nucleotide N[C@H]1[C@H]([n]2c3c(c([n]c[n]3)N)[n]c2)O[C@H](COP(=O)([O-])[O-])[C@H]1O Adenosine
303 2'-deoxy-2'-(4-ethyl-1H-1,2,3-triazol-1-yl)adenosine 5'-(dihydrogen phosphate) 3000000021A A9Z nucleotide [O-]P(OC[C@H]1O[C@@H]([n]2c3[n]c[n]c(N)c3[n]c2)[C@@H]([C@@H]1O)[n]1[n][n]c(c1)CC)(=O)[O-] Adenosine
261 2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate) 3000000083A AF2 nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](F)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] Adenosine
319 2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) 3000000033C CFZ nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](F)[C@@H]1O)N1C(N=C(N)C=C1)=O)(=O)[O-] Cytidine
320 2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate) 3000000071U UFT nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](F)[C@@H]1O)N1C(NC(=O)C=C1)=O)(=O)[O-] Uridine
324 2'-methylselenyl-2'-deoxyuridine-5'-phosphate 3000000073U UMS nucleotide [O-]P(OC[C@H]1O[C@@H](N2C(=O)NC(=O)C=C2)[C@@H]([C@@H]1O)[Se]C)(=O)[O-] Uridine
275 2-amino-9-(6-deoxy-5-O-phosphono-beta-D-allofuranosyl)-3,9-dihydro-6H-purin-6-one 3000000039G GMX nucleotide [O-]P(O[C@H](C)[C@H]1O[C@@H]([n]2c3NC(N)=NC(=O)c3[n]c2)[C@H](O)[C@@H]1O)(=O)[O-] Guanosine
195 2-amino-9-[2-deoxyribofuranosyl]-9H-purine-5'-monophosphate 1000000005X 2PR nucleotide [O-]P(OC[C@H]1O[C@H](C[C@@H]1O)[n]1c[n]c2c1[n]c(N)[n]c2)(=O)[O-] Unknown
263 2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one 3000000063G TG nucleotide NC1NC(=O)c2nc[n]([C@H]3[C@H](O)[C@@H](OP(=O)([O-])[O-])CO3)c2N=1 Guanosine
271 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate) 3000000015A 8AN nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1N)[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] Adenosine
294 3'-deoxyadenosine-5'-monophosphate 1000000007A 3DA nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)C1)[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] Adenosine
274 3'-deoxyguanosine 5'-monophosphate 1000000038G GDO nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)C1)[n]1c[n]c2C(=O)NC(N)=Nc21)(=O)[O-] Guanosine
287 3-[1-(4-bromophenyl)-1H-1,2,3-triazol-4-yl]-1-[5-O-(trihydroxy-lambda~5~-phosphanyl)-beta-D-ribofuranosyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine 2000000019X A7C nucleotide Nc1c2c([n]([C@H]3[C@H](O)[C@H](O)[C@@H](COP(=O)([O-])[O-])O3)[n]c2-c2[n][n][n](-c3ccc(Br)cc3)c2)[n]c[n]1 Unknown
277 3-ethynyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 2000000020X A7E nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1[n]c(c2c1[n]c[n]c2N)C#C)(=O)[O-] Unknown
276 4'-thio-4'-deoxy-cytosine-5'-monophosphate 3000000061C S4C nucleotide [O-]P(OC[C@H]1S[C@H]([C@H](O)[C@@H]1O)N1C(N=C(N)C=C1)=O)(=O)[O-] Cytidine
323 4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one 3000000032C CFL nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](F)[C@@H]1O)N1C(N=C(N)C=C1)=O)(=O)[O-] Cytidine
267 4-amino-1-{2,5-anhydro-4-[(phosphonooxy)methyl]-alpha-L-lyxofuranosyl}pyrimidin-2(1H)-one 3000000001C 10C nucleotide [O-]P(OC[C@]12O[C@@H](N3C(=O)N=C(N)C=C3)[C@H](OC1)[C@@H]2O)(=O)[O-] Cytidine
247 5'-3,6-dihydrocytidylic acid 2000000060C RY nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1CC=C(N)NC1=O)(=O)[O-] Cytidine
298 5'-O-[(S)-hydroxy(methyl)phosphoryl]adenosine 5000000009A 45A nucleotide CP(OC[C@@H]1[C@@H](O)[C@@H](O)[C@H]([n]2c3c(c(ncn3)N)nc2)O1)(=O)[O-] Adenosine
279 5'-O-[(dithiophosphono)]cytidine 5000000013C 73W nucleotide NC1C=CN([C@H]2[C@H](O)[C@H](O)[C@@H](COP(=S)([S-])[O-])O2)C(=O)N=1 Cytidine
220 5-bromo-2'-deoxy-cytidine-5'-monophosphate 1000000030C CBR nucleotide [O-]P(OC[C@H]1O[C@@H](N2C(=O)N=C(N)C(Br)=C2)C[C@@H]1O)(=O)[O-] Cytidine
234 5-bromo-2'-deoxyuridine-5'-monophosphate 1000000027U BRU nucleotide [O-]P(OC[C@H]1O[C@@H](N2C(=O)NC(=O)C(Br)=C2)C[C@@H]1O)(=O)[O-] Uridine
188 5-bromo-uridine-5'-monophosphate 2000000010U 5BU nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=C(Br)C(NC1=O)=O)(=O)[O-] Uridine
206 5-bromocytidine 5'-(dihydrogen phosphate) 2000000031C CBV nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=C(Br)C(N)=NC1=O)(=O)[O-] Cytidine
248 5-fluorocytidine 5'-(dihydrogen phosphate) 2000000011C 5CF nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=C(F)C(N)=NC1=O)(=O)[O-] Cytidine
305 5-iodo-cytidine-5'-monophosphate 2000000012C 5IC nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)N1C=C(I)C(N)=NC1=O)(=O)[O-] Cytidine
226 5-iodouridine-5'-monophosphate 2000000044U IU nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=C(I)C(NC1=O)=O)(=O)[O-] Uridine
301 5-nitrocytidine 5'-(dihydrogen phosphate) 2000000051C N5M nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=C([N+]([O-])=O)C(N)=NC1=O)(=O)[O-] Cytidine
329 8-aza-nebularine-5'-monophosphate 2000000016X 8AZ nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c2c([C@@H](O)NC=N2)[n][n]1)(=O)[O-] Unknown
222 8-bromo-2'-deoxyguanosine-5'-monophosphate 1000000026G BGM nucleotide [O-]P(OC[C@H]1O[C@@H]([n]2c(Br)[n]c3C(NC(N)=Nc23)=O)C[C@@H]1O)(=O)[O-] Guanosine
249 8-bromoguanosine 5'-(dihydrogen phosphate) 2000000040G GRB nucleotide [O-]P(OC[C@H]1O[C@@H]([n]2c(Br)[n]c3C(NC(N)=Nc23)=O)[C@H](O)[C@@H]1O)(=O)[O-] Guanosine
316 9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-9H-purin-6-amine 3000000082A A5L nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](F)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] Adenosine
292 9-beta-D-ribofuranosyl-9H-purin-2-amine 2000000050X MTU nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c(N)[n]c2)(=O)[O-] Unknown
327 D-ribofuranosyl-benzene-5'-monophosphate 2000000059X PYY nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)c1ccccc1)(=O)[O-] Unknown
457 N-(2,2-dimethoxyethyl)-[[(2R,3S,5S)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphonamidicacid 4000045551U MU4 nucleotide COC(CNP(=O)(O)OC[C@H]2O[C@H](n1cc(C)c(=O)[nH]c1=O)C[C@@H]2O)OC Uridine
285 N1-deaza-adenosine-5'-monophosphate 2000000002X 1DP nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c2c([n]c1)c(N)cc[n]2)(=O)[O-] Unknown
295 N1-protonated adenosine-5'-monophosphate 2000000024A AP7 nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[nH+]c2N)(=O)[O-] Adenosine
291 N3-protonated cytidine-5'-monophosphate 2000000034C CH nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[N+]1=CC=C(N)NC1=O)(=O)[O-] Cytidine
325 N6-dimethyl-3'-amino-adenosine-5'-monophosphate 3000000081A 5AA nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1N)[n]1c[n]c2c1[n]c[n]c2N(C)C)(=O)[O-] Adenosine
189 [(1R,3R,4R,7S)-7-hydroxy-3-(5-methylcytosin-1-YL)-2,5-dioxabicyclo[2.2.1]hept-1-YL]methyl dihydrogen phosphate 3000000046C LCC nucleotide [O-]P(OC[C@]12CO[C@H]([C@@H]1O)[C@@H](O2)N1C(N=C(N)C(=C1)C)=O)(=O)[O-] Cytidine
228 [(1R,3R,4R,7S)-7-hydroxy-3-(adenin-9-YL)-2,5-dioxabicyclo[2.2.1]hept-1-YL]methyl dihydrogen phosphate 3000000045A LCA nucleotide [O-]P(OC[C@]12CO[C@H]([C@@H]1O)[C@@H](O2)[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] Adenosine
227 [(1R,3R,4R,7S)-7-hydroxy-3-(thymin-1-YL)-2,5-dioxabicyclo[2.2.1]hept-1-YL]methyl dihydrogen phosphate 3000000064U TLN nucleotide [O-]P(OC[C@]12CO[C@H]([C@@H]1O)[C@@H](O2)N1C(NC(=O)C(=C1)C)=O)(=O)[O-] Uridine
210 [(1R,3R,4R,7S)-7hydroxy-3-(guanin-9-YL)-2,5-dioxabicyclo[2.2.1]hept-1-YL]methyl dihydrogen phosphate 3000000047G LCG nucleotide [O-]P(OC[C@]12CO[C@H]([C@@H]1O)[C@@H](O2)[n]1c[n]c2C(=O)NC(N)=Nc21)(=O)[O-] Guanosine
458 [(2R,3S,5R)-5-(6-amino-8-deuteriopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]phosphonicacid 3000000551A AD2 nucleotide [2H]c2nc1c(N)ncnc1n2[C@@H]3O[C@H](P(=O)(O)O)[C@@H](O)C3O Adenosine
454 [(2R,3S,5R)-5-(6-amino-8-deuteriopurin-9-yl)-3-hydroxyoxolan-2-yl]phosphonicacid 1000000551U 2HA nucleotide [2H]c2nc1c(N)ncnc1n2[C@H]3C[C@H](O)[C@@H](P(=O)(O)O)O3 Adenosine
455 [(2R,3S,5S)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-N-(2-methoxyethyl)phosphonamidicacid 40000025551U MU2 nucleotide COCCNP(=O)(O)OC[C@H]2O[C@H](n1cc(C)c(=O)[nH]c1=O)C[C@@H]2O Uridine
450 [(2R,3S,5S)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy-morpholin-4-ylphosphinicacid 4000015553G MU1 nucleotide Uridine
453 [(2R,3S,5S)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methyldihydrogenphosphate 4000005553U P1T nucleotide Cc2cn([C@@H]1C[C@H](O)[C@@H](COP(=O)(O)O)O1)c(=O)[nH]c2=O Uridine
451 [(2R,3S,5S)-5-(4-amino-2-oxopyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methyl dihydrogen phosphate 1000000551G D2C nucleotide C1[C@@H]([C@H](O[C@@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O Cytidine
449 [(2S,3S,5R)-3-amino-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate 1000000551G G38 nucleotide c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)N)N=C(NC2=O)N Guanosine
448 [(2S,3S,5R)-3-amino-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate 1000001551U NYM nucleotide CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)N Uridine
447 [(2S,3S,5R)-3-amino-5-(6-aminopurin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate" 1000000551A A43 nucleotide c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)N)N Adenosine
452 [(2S,5R)-5-(2-amino-8-deuterio-6-oxo-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methylphosphonicacid 1000000551G 2HG nucleotide [2H]c2nc1c(=O)[nH]c(N)nc1n2[C@H]3CC(O)[C@@H](CP(=O)(O)O)O3 Guanosine
282 [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-diazanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxyphosphinic acid 2000000054X O2Z nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c(N)[n]c2NN)(=O)[O-] Unknown
258 [(2~{R},3~{S},4~{R},5~{S})-5-[1-methyl-2,4-bis(oxidanylidene)pyrimidin-5-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate 2000000025X B8H nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)C1C(NC(=O)N(C=1)C)=O)(=O)[O-] Unknown
304 [(6-amino-9H-purin-9-YL)-[5-fluoro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole]-4'YL]methyl dihydrogen phosphate 3000000023A ANZ nucleotide [O-]P(OC[C@H]1O[C@@H]([n]2c3[n]c[n]c(N)c3[n]c2)[C@@H]2O[B@-]3(O[C@H]12)OCc1c3ccc(F)c1)(=O)[O-] Adenosine
315 adenine arabinose-5'-phosphate 3000000018A A5O nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N)(=O)[O-] Adenosine
265 adenosine-5'-(dithio)phosphate 5000000022A ADS nucleotide [S-]P(OC[C@@H]1[C@H]([C@@H](O)[C@@H](O1)[n]1c[n]c2c1[n]c[n]c2N)O)(=O)[S-] Adenosine
243 adenosine-5'-thio-monophosphate 5000000062A SRA nucleotide Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])([O-])=S)[C@@H](O)[C@H]1O Adenosine
313 cytosine arabinose-5'-phosphate 3000000029C CAR nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)N1C(N=C(N)C=C1)=O)(=O)[O-] Cytidine
262 guanine arabinose-5'-phosphate 2000000037G GAO nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)[n]1c[n]c2C(=O)NC(N)=Nc21)(=O)[O-] Guanosine
239 guanosine phosphorodithioate 5000000006G 2SG nucleotide NC1NC(=O)c2nc[n]([C@H]3[C@H](O)[C@H](O)[C@@H](COP(=O)([S-])[S-])O3)c2N=1 Guanosine
330 guanosine-5'-thio-monophosphate 4000000041G GS nucleotide NC1=Nc2c(ncn2[C@H]2C[C@H](O)[C@@H](COP([O-])([S-])=O)O2)C(=O)N1 Guanosine
326 guanosine-P3-adenosine-5',5'-triphosphate 3000000036G G3A nucleotide [O-][P@](OC[C@H]1O[C@@H]([n]2c3N=C(N)NC(=O)c3[n]c2)[C@H](O)[C@@H]1O)(O[P@@]([O-])(O[P@]([O-])(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2N)=O)=O)=O Guanosine
237 isocytidine-5'-monophosphate 2000000042C IC nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C(N)=NC(=O)C=C1)(=O)[O-] Cytidine
236 isoguanosine-5'-monophosphate 2000000043A IG nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N1C=NC2C1=NC(=O)NC=2N)(=O)[O-] Adenosine
221 purine riboside-5'-monophosphate 2000000056X P5P nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n]1c[n]c2c1[n]c[n]c2)(=O)[O-] Unknown
290 puromycin-5'-monophosphate 3000000057A PPU nucleotide [O-]P(OC[C@H]1O[C@H]([C@H](O)[C@@H]1NC([C@@H](N)Cc1ccc(OC)cc1)=O)[n]1c[n]c2c1[n]c[n]c2N(C)C)(=O)[O-] Adenosine
314 uracil arabinose-5'-phosphate 3000000069U UAR nucleotide [O-]P(OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)N1C(NC(=O)C=C1)=O)(=O)[O-] Uridine
224 uridine 5'-monothiophosphate 5000000065U U37 nucleotide O[C@@H]1[C@@H](COP(=O)([S-])[O-])O[C@@H](N2C(=O)NC(=O)C=C2)[C@@H]1O Uridine