Modomics - A Database of RNA Modifications
RsmA from Saccharomyces cerevisiae - protein summary.
Position of modification - modification:
s:1779(1518) - m6,6A
s:1780(1519) - m6,6A
SceRsmA (formerly Dim1p) dimethylates two adjacent A (positions 1779 and 1780; 1518 and 1519 in E. coli numberings) in the loop of a conserved hairpin h45 near the 3′-end of 18S rRNA. AdoMet is the methyl group donor. RsmA can bind on naked rRNA but the target bases cannot be methylated before a subset of ribosomal proteins have bound. Dim2p could be a cofactor. Bacterial RsmA (KsgA) is the ortholog of yeast RsmA (Dim1p). They belong to the erm family of methyltransferases responsible for erythromycin resistance. RsmA homologs exists also Archaea. Notice, the acronym RsmA has also been used for for Regulator of Secondary Metabolism A, a protein not related to the RNA small subunit Methyltransferase.
Recognition of a complex substrate by the KsgA/Dim1 family of enzymes has been conserved throughout evolution.
O'Farrell HC, Pulicherla N, Desai PM, Rife JP
Structural and functional divergence within the Dim1/KsgA family of rRNA methyltransferases.
Pulicherla N, Pogorzala LA, Xu Z, O Farrell HC, Musayev FN, Scarsdale JN, Sia EA, Culver GM, Rife JP
J Mol Biol
The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3'-terminal loop of 18 S rRNA is essential in yeast.
Lafontaine D, Delcour J, Glasser AL, Desgres J, Vandenhaute J
J Mol Biol
Comprehensive phylogenetic analysis of evolutionarily conserved rRNA adenine dimethyltransferase suggests diverse bacterial contributions to the nucleus-encoded plastid proteome.
Park AK, Kim H, Jin HJ
Mol Phylogenet Evol
Dim2p, a KH-domain protein required for small ribosomal subunit synthesis.
Vanrobays E, Gelugne JP, Caizergues-Ferrer M, Lafontaine DL
Yeast 18S rRNA dimethylase Dim1p: a quality control mechanism in ribosome synthesis?
Lafontaine DL, Preiss T, Tollervey D
Mol Cell Biol
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