Modomics - A Database of RNA Modifications

ID Card:

Full name: preQ1 synthase
Synonym: YgcD
GI: 2495654
Orf: yqcD, b2794
COG: COG2904
UniProt: Q46920
Alpha Fold Predicted Structure: AF-Q46920-F1
Enzyme type: oxidoreductase
Position of modification - modification: t:34 - Q



Protein sequence:

MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGLKADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQTRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNYEFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSLQIQYRGRQIDREKLLRYLVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPSTTRLVRQ

Comments:

Reaction preQ0base:preQ0 does not occur under physiological conditions, because normally all preQ0(b) is converted to preQ1(b) by QueF.





Alpha Fold Predicted Structure:




Processing file... [270141/270141]


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Protein sequence:

M S S Y A N H Q A L A G L T L G K S T D Y R D T Y D A S L L Q G V P R S L N R D P L G L K A D N L P F H G T D I W T L Y E L S W L N A K G L P Q V A V G H V E L D Y T S V N L I E S K S F K L Y L N S F N Q T R F N N W D E V R Q T L E R D L S T C A Q G K I S V A L Y R L D E L E G Q P I G H F N G T C I D D Q D I T I D N Y E F T T D Y L E N A T C G E K V V E E T L V S H L L K S N C L I T H Q P D W G S L Q I Q Y R G R Q I D R E K L L R Y L V S F R H H N E F H E Q C V E R I F N D L L R F C Q P E K L S V Y A R Y T R R G G L D I N P W R S N S D F V P S T T R L V R Q
20406080100120140160180200220240260280SequenceGHTBSN

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q46920-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q46920-F1.cif  
DSSP Secondary Structures   Q46920.dssp  





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