Modomics - A Database of RNA Modifications

ID Card:

Full name: Ribosomal RNA small subunit methyltransferase J
Synonym: YhiQ
GI: 388479744
COG: COG0742
UniProt: P68567
Structures: | 2PGX |
Enzyme type: methyltransferase
Position of modification - modification: s:1516(1516) - m2G


PDB Structures:


2PGX

Structure Description:

Title: Crystal structure of UPF0341 protein yhiQ from E. coli, Northeast Structural Genomics Target ER585
Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Technique: X-Ray Diffraction
Resolution: 2.0
R value free: 0.243
R value observed: 0.228
R value work: 0.228

Abstract of the PDB Structure's related Publication:



Download RCSB-PDB Structures:

Pdb Files   2PGX.pdb  
Pdbx/mmCIF Files   2PGX.cif  


Protein sequence:

MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLELRKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNAVVTKGHRFDIYAGTPV

Comments:

RsmJ catalyzes formation of m2G1516 in the loop of hairpin 45 at the 3’-end of 16S ribosomal RNA. Recombinant RsmJ specifically methylates 30S subunits extracted from the deletion strain. All ribosomal guanine-(N2)-methyltransferases have similar AdoMet-binding sites. Moreover, comparative sequence analysis supported by sequence/structure threading suggests that rRNA:m2G MTases are very closely related to RNA and DNA:m6A MTases and that these two enzyme families share common architecture of the active site and presumably a similar mechanism of methyl group transfer onto the exocyclic amino group of their target bases.







Publications: