Modomics - A Database of RNA Modifications

ID Card:

Full name: tRNA methyltransferase 10 C, mitochondrial
Synonym: MRPP1, RG9MTD1
GI: 117647226
UniProt: Q7L0Y3
Structures: | 5NFJ | 7ONU |
Alpha Fold Predicted Structure: AF-Q7L0Y3-F1
Complex: mtRNase P
Enzyme type: methyltransferase
Position of modification - modification: t:9 - m1G
t:9 - m1A


PDB Structures:


5NFJ

Structure Description:

Title:
Classification:
Technique:

Abstract of the PDB Structure's related Publication:

Yet to be published

Download RCSB-PDB Structures:

Pdb Files   5NFJ.pdb   7ONU.pdb  
Pdbx/mmCIF Files   5NFJ.cif   7ONU.cif  


Protein sequence:

MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEELELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRILLCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT

Comments:

Part of mitochondrial RNase P which consists of three proteins: MRPP1/TRMT10C, MRPP2/HSD17B10 and MRPP3/KIAA0391. All three are required for the enzyme endonuclease activity while two (MRPP1/TRMT10C, MRPP2/HSD17B10) are sufficient for methyltransferase activity. MRPP1/TRMT10C is a homolog of yeast Trm10 but unlike the yeast enzyme TRMT10C requires another protein, MRPP2/HSD17B10, to be active as a methyltransferase. Both precursors and mature tRNAs are substrates for the methyltransferase complex.




Reaction Substrate SubstrateType Position (Anti)Codon Modified (Anti)Codon Amino Acid Change Transcript Name Transcript Region Cellular Localization References
G:m1G RNA tRNA 9 GAU GAU tRNAIleGAU ~ Mitochondrion 23042678   
A:m1A RNA tRNA 9 ∀UU ∀UU tRNALys∀UU ~ Mitochondrion 23042678   

Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M A A F L K M S V S V N F F R P F T R F L V P F T L H R K R N N L T I L Q R Y M S S K I P A V T Y P K N E S T P P S E E L E L D K W K T T M K S S V Q E E C V S T I S S S K D E D P L A A T R E F I E M W R L L G R E V P E H I T E E E L K T L M E C V S N T A K K K Y L K Y L Y T K E K V K K A R Q I K K E M K A A A R E E A K N I K L L E T T E E D K Q K N F L F L R L W D R N M D I A M G W K G A Q A M Q F G Q P L V F D M A Y E N Y M K R K E L Q N T V S Q L L E S E G W N R R N V D P F H I Y F C N L K I D G A L H R E L V K R Y Q E K W D K L L L T S T E K S H V D L F P K D S I I Y L T A D S P N V M T T F R H D K V Y V I G S F V D K S M Q P G T S L A K A K R L N L A T E C L P L D K Y L Q W E I G N K N L T L D Q M I R I L L C L K N N G N W Q E A L Q F V P K R K H T G F L E I S Q H S Q E F I N R L K K A K T

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q7L0Y3-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q7L0Y3-F1.cif  
DSSP Secondary Structures   Q7L0Y3.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase--extensive moonlighting in mitochondrial tRNA biogenesis. Vilardo E, Nachbagauer C, Buzet A, Taschner A, Holzmann J, Rossmanith W... Nucleic Acids Res [details] 23042678 -

Links:

_PubMed_