Modomics - A Database of RNA Modifications

ID Card:

Full name: tRNA wybutosine-synthesizing protein 2
Synonym: TRMT12
GI: 74726289
COG: COG2520
UniProt: Q53H54
Alpha Fold Predicted Structure: AF-Q53H54-F1
Enzyme type: Alpha-amino-alpha-carboxypropyltransferase
Position of modification - modification: t:37 - o2yW



Protein sequence:

MRENVVVSNMERESGKPVAVVAVVTEPWFTQRYREYLQRQKLFDTQHRVEKMPDGSVALPVLGETLPEQHLQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEVSRWVEGRGVKWSAELEADLPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQILHIQPVKSYAPHVDHIVLDLECCPCPSVG

Comments:

It was demonstrated that human TYW2 (hTYW2) is active in yeast and can synthesize the yW of yeast tRNAPhe. Human TYW2 (hTYW2) was found to be amplified and overexpressed in breast cancer.





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M R E N V V V S N M E R E S G K P V A V V A V V T E P W F T Q R Y R E Y L Q R Q K L F D T Q H R V E K M P D G S V A L P V L G E T L P E Q H L Q E L R N R V A P G S P C M L T Q L P D P V P S K R A Q G C S P A Q K L C L E V S R W V E G R G V K W S A E L E A D L P R S W Q R H G N L L L L S E D C F Q A K Q W K N L G P E L W E T V A L A L G V Q R L A K R G R V S P D G T R T P A V T L L L G D H G W V E H V D N G I R Y K F D V T Q C M F S F G N I T E K L R V A S L S C A G E V L V D L Y A G I G Y F T L P F L V H A G A A F V H A C E W N P H A V V A L R N N L E I N G V A D R C Q I H F G D N R K L K L S N I A D R V I L G L I P S S E E G W P I A C Q V L R Q D A G G I L H I H Q N V E S F P G K N L Q A L G V S K V E K E H W L Y P Q Q I T T N Q W K N G A T R D S R G K M L S P A T K P E W Q R W A E S A E T R I A T L L Q Q V H G K P W K T Q I L H I Q P V K S Y A P H V D H I V L D L E C C P C P S V G

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q53H54-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q53H54-F1.cif  
DSSP Secondary Structures   Q53H54.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
Structure-function analysis of human TYW2 enzyme required for the biosynthesis of a highly modified Wybutosine (yW) base in phenylalanine-tRNA. Rodriguez V, Vasudevan S, Noma A, Carlson BA, Green JE, Suzuki T, Chandrasekharappa SC PLoS One [details] 22761755 -

Links:

_PubMed_