Modomics - A Database of RNA Modifications

ID Card:

Full name: Archaeosine tRNA-guanine transglycosylase
Synonym: queuine tRNA-ribosyltransferase related protein
UniProt: Q9HI54
Alpha Fold Predicted Structure: AF-Q9HI54-F1
Enzyme type: transglycosylase
Position of modification - modification: t:13 - G+
t:15 - G+



Protein sequence:

MKIEERDGLARIAKFETPHGPIETPTVLPVINPNIMNITPQEMKPLGLQGIITNSYIILRTPELRERALREGLHSLIGYDGPIMTDSGTFQSYVYGSIEFNNREVVDFQRRIGSDISTILDVFTTPGTPKPEAEKAVIETYNRMLEVNDEEGIIAGPVQGGVYPDLRQKSAELMNSTNAGYHPIGGVVPLLETYDYSTLVDIIINSKINLSFNKPVHLFGGGHPMFFAFSVYLGVDLFDSASYIKYAKDDRLIYPDGTRDLARITELPQWSPLYDRYTVKEIRDLDKERRSLEIARHNLKAIFMEISEIKERIYEEGLAQYVAQKARSHPSLMKAYSRIMSYSNILEKYEDLSKKTAYFFYDSFSTRNPYVSRINRFTESYLSSNKKDTYAFTYRAWNPGYTNSEFVRDVYQKIDCNALISWSGTFVPAELENTYPIEQTVSSGFEPDPDFSRAKDLIAPFRVDMYKGEKFEGEQVRSFNLNKIRMVADYQFGSGVGRMIFRDDVRINVSKTGRIRGILSKEGRQIATMRNDGFFTLTYYGASLIHSQLKPPAMRVTVSKESAEYNAKGYSVFFKFILGSDENIIAKNDVLVVDEDDVLAAVGKAMVSGRELREYTEGIAVKVHEGRDQSEK

Comments:

Archaeosine tRNA-guanine transglycosylase (ArcTGT) catalyses the replacement of guanine base with preQ(0) in archaea tRNAs. G(+), the following modification of preQ(0) is catalyzed by archaeosine synthetases. It is found only in position 15 in many archaeal tRNAs. Exceptionally, G(+) is found either in positions 13 and 15 in T.acidophilum , with ArcTGT from T.acidophilum having multisite specificity. ArcTGT is responsible for the formation of both G(+) 13 and G(+) 15 (Kawamura et al. 2016 ).




Reaction Substrate SubstrateType Position (Anti)Codon Modified (Anti)Codon Amino Acid Change Transcript Name Transcript Region Cellular Localization References
G:preQ0 RNA tRNA 13 UAG UAG tRNALeuUAG D-stem prokaryotic cytosol 26721388   
G:preQ0 RNA tRNA 15 UAG UAG tRNALeuUAG D.loop prokaryotic cytosol 26721388   

Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M K I E E R D G L A R I A K F E T P H G P I E T P T V L P V I N P N I M N I T P Q E M K P L G L Q G I I T N S Y I I L R T P E L R E R A L R E G L H S L I G Y D G P I M T D S G T F Q S Y V Y G S I E F N N R E V V D F Q R R I G S D I S T I L D V F T T P G T P K P E A E K A V I E T Y N R M L E V N D E E G I I A G P V Q G G V Y P D L R Q K S A E L M N S T N A G Y H P I G G V V P L L E T Y D Y S T L V D I I I N S K I N L S F N K P V H L F G G G H P M F F A F S V Y L G V D L F D S A S Y I K Y A K D D R L I Y P D G T R D L A R I T E L P Q W S P L Y D R Y T V K E I R D L D K E R R S L E I A R H N L K A I F M E I S E I K E R I Y E E G L A Q Y V A Q K A R S H P S L M K A Y S R I M S Y S N I L E K Y E D L S K K T A Y F F Y D S F S T R N P Y V S R I N R F T E S Y L S S N K K D T Y A F T Y R A W N P G Y T N S E F V R D V Y Q K I D C N A L I S W S G T F V P A E L E N T Y P I E Q T V S S G F E P D P D F S R A K D L I A P F R V D M Y K G E K F E G E Q V R S F N L N K I R M V A D Y Q F G S G V G R M I F R D D V R I N V S K T G R I R G I L S K E G R Q I A T M R N D G F F T L T Y Y G A S L I H S Q L K P P A M R V T V S K E S A E Y N A K G Y S V F F K F I L G S D E N I I A K N D V L V V D E D D V L A A V G K A M V S G R E L R E Y T E G I A V K V H E G R D Q S E K

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q9HI54-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q9HI54-F1.cif  
DSSP Secondary Structures   Q9HI54.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
Multisite-specific archaeosine tRNA-guanine transglycosylase (ArcTGT) from Thermoplasma acidophilum, a thermo-acidophilic archaeon. Kawamura T, Hirata A, Ohno S, Nomura Y, Nagano T, Nameki N, Yokogawa T, Hori H Nucleic Acids Res. [details] 26721388 10.1093/nar/gkv1522