Modomics - A Database of RNA Modifications

ID Card:

Full name: RNA pseudouridylate synthase domain-containing protein 4
GI: 74731354
UniProt: Q96CM3
Structures: | 5UBA |
Alpha Fold Predicted Structure: AF-Q96CM3-F1
Enzyme type: pseudouridine synthase
Position of modification - modification: l:1397(None) - Y


PDB Structures:


5UBA

Structure Description:

Title:
Classification:
Technique:

Abstract of the PDB Structure's related Publication:



Download RCSB-PDB Structures:

Pdb Files   5UBA.pdb  
Pdbx/mmCIF Files   5UBA.cif  


Protein sequence:

MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTKKEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQKLSVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEMPNEDQNENNEAKCLGAQ

Comments:





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M A A P R W S A S G P W I R G N G Q G C G S L F T L V S K P F C A A A A A S T A I N A Q R L A E K L R A Q K R E Q D T K K E P V S T N A V Q R R V Q E I V R F T R Q L Q R V H P N V L A K A L T R G I L H Q D K N L V V I N K P Y G L P V H G G P G V Q L C I T D V L P I L A K M L H G H K A E P L H L C H R L D K E T T G V M V L A W D K D M A H Q V Q E L F R T R Q V V K K Y W A I T V H V P M P S A G V V D I P I V E K E A Q G Q Q Q H H K M T L S P S Y R M D D G K M V K V R R S R N A Q V A V T Q Y Q V L S S T L S S A L V E L Q P I T G I K H Q L R V H L S F G L D C P I L G D H K Y S D W N R L A P Q K L S V G T L K K L G L E Q S K A R Y I P L H L H A R Q L I L P A L G S G K E E L N L V C K L P R F F V H S L H R L R L E M P N E D Q N E N N E A K C L G A Q

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q96CM3-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q96CM3-F1.cif  
DSSP Secondary Structures   Q96CM3.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
The Pseudouridine Synthase RPUSD4 Is an Essential Component of Mitochondrial RNA Granules. Zaganelli S, Rebelo-Guiomar P, Maundrell K, Rozanska A, Pierredon S, Powell CA, Jourdain AA, Hulo N, Lightowlers RN, Chrzanowska-Lightowlers ZM, Minczuk M, Martinou JC J Biol Chem [details] 28082677 10.1074/jbc.M116.771105
A pseudouridine synthase module is essential for mitochondrial protein synthesis and cell viability. Antonicka H, Choquet K, Lin ZY, Gingras AC, Kleinman CL, Shoubridge EA EMBO Rep. [details] 27974379 10.15252/embr.201643391