Modomics - A Database of RNA Modifications

ID Card:

Full name: THUMP domain containing 1
Synonym: FLJ20274, Tan1
GI: 61248576
UniProt: Q9NXG2
Structures: | 2DIR |
Alpha Fold Predicted Structure: AF-Q9NXG2-F1


PDB Structures:


2DIR

Structure Description:

Title: Solution structure of the THUMP domain of THUMP domain-containing protein 1
Classification: RNA BINDING PROTEIN
Technique: NMR Solution
Resolution:
Conformers calculated: 100
Conformers submitted: 20
Selection criteria: target function, structures with the lowest energy, structures with the least restraint violations

Abstract of the PDB Structure's related Publication:

Yet to be published

Download RCSB-PDB Structures:

Pdb Files   2DIR.pdb  
Pdbx/mmCIF Files   2DIR.cif  


Protein sequence:

MAAPAQQTTQPGGGKRKGKAQYVLAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNENDFS

Comments:





Alpha Fold Predicted Structure:




Parsing response... [270074/320102]


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Protein sequence:

M A A P A Q Q T T Q P G G G K R K G K A Q Y V L A K R A R R C D A G G P R Q L E P G L Q G I L I T C N M N E R K C V E E A Y S L L N E Y G D D M Y G P E K F T D K D Q Q P S G S E G E D D D A E A A L K K E V G D I K A S T E M R L R R F Q S V E S G A N N V V F I R T L G I E P E K L V H H I L Q D M Y K T K K K K T R V I L R M L P I S G T C K A F L E D M K K Y A E T F L E P W F K A P N K G T F Q I V Y K S R N N S H V N R E E V I R E L A G I V C T L N S E N K V D L T N P Q Y T V V V E I I K A V C C L S V V K D Y M L F R K Y N L Q E V V K S P K D P S Q L N S K Q G N G K E A K L E S A D K S D Q N N T A E G K N N Q Q V P E N T E E L G Q T K P T S N P Q V V N E G G A K P E L A S Q A T E G S K S N E N D F S
50100150200250300350SequenceGHTBSN

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q9NXG2-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q9NXG2-F1.cif  
DSSP Secondary Structures   Q9NXG2.dssp  





Publications: