Modomics - A Database of RNA Modifications

ID Card:

Full name: DNA dC->dU-editing enzyme APOBEC-3D
GI: 48474596
UniProt: Q96AK3
Alpha Fold Predicted Structure: AF-Q96AK3-F1
Enzyme type: deaminase



Protein sequence:

MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ

Comments:





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M N P Q I R N P M E R M Y R D T F Y D N F E N E P I L Y G R S Y T W L C Y E V K I K R G R S N L L W D T G V F R G P V L P K R Q S N H R Q E V Y F R F E N H A E M C F L S W F C G N R L P A N R R F Q I T W F V S W N P C L P C V V K V T K F L A E H P N V T L T I S A A R L Y Y Y R D R D W R W V L L R L H K A G A R V K I M D Y E D F A Y C W E N F V C N E G Q P F M P W Y K F D D N Y A S L H R T L K E I L R N P M E A M Y P H I F Y F H F K N L L K A C G R N E S W L C F T M E V T K H H S A V F R K R G V F R N Q V D P E T H C H A E R C F L S W F C D D I L S P N T N Y E V T W Y T S W S P C P E C A G E V A E F L A R H S N V N L T I F T A R L C Y F W D T D Y Q E G L C S L S Q E G A S V K I M G Y K D F V S C W K N F V Y S D D E P F K P W K G L Q T N F R L L K R R L R E I L Q

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q96AK3-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q96AK3-F1.cif  
DSSP Secondary Structures   Q96AK3.dssp  





Publications:

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