Modomics - A Database of RNA Modifications

ID Card:

Full name: tRNA methyltransferase 9
Synonym: fid
UniProt: Q9VBJ3
Alpha Fold Predicted Structure: AF-Q9VBJ3-F1
Enzyme type: methyltransferase



Protein sequence:

MLSAELASSTALLNASYQRSNGPAKDEVCPSTIYDKCNTTTGAAAATMTKQLTTATATNAASSIGQPGDLAPTVISPTAPSTLTTGGAGGAGAGGTISPVSEATKTAPPPQPVEEKPSSSDASGRSAALERAYVHDVYEHCEEPTGPVRPRMAHFLSGLDPGSVVCDVGCGSGRYLTQCNPAICTIGVERCYRLSKVAHEKGGEVALCDNLELPFRDDSFDAVLSLAVVHHFATTERRVQALRELARILRIGGRVVITVWALEQRHRRFESQDVLIPWQPPKNRNYSYSDEEDDDNFQPPYHAYTEDSTNSSRSAGDGDSSSLSSSSPGESCYSFVRRAIQKLARGRRHAWFMDSWSSKDTKNDSSLDYEDAKDLPIELRRLEDFEDFPDPPLSAGLKSRSLGSILQPPPRQIVRSRSSVPSLGGPLIPGESKASAAALLLNNPESQQLQLQLQLNGRHSPTTTASAGNTLSRRPKLIKQKQSLCDDDAATPPAPESFQVVSSLNGSNGVVSSSLYTKSGCYAGNFHQHASATATPPSGDSGEGGVTGGPTGGPTFLRKQSSLNEDLMACNRLREKERVRKRIQKQTSLNEAFLCRSALFSKRLQVIREGFTTKIKSSTGSLERVTKTGISKLIQNIKSGPQAQTNPAQHPVQLDKNATLNNNNKQGVAATAHQHHHHHHHHPVHHLSHLILPASSTSAPVTYCSSVECTMSNLCHCSQYQQECPACADGGQGDKARRHSRESGSDSSKDSSLQSDTSIESEDSFASVIFIPKPEQHQQQLNYQQQHQNSNSSSSNSSSSNGQRAQGAAGRDQGVNPGSRLPPTHSVPTSPLIMPCPPTPAHSPAAIQGTVTSPPQSTSAVSAAMAILTPPSKPARFSFDEAHIKLQKEQHVDLQKELPKEKKEPLKVLPKEPLKESPPVRRITRQAIRDLPPIPKFRKQQSLQLQRQSFPIVRRASGSGVSTSASTTSLATKLLSLELFNPATDDLDSDSSEPSSPDSIDSVISAPRSAKVPSGSEEGEAASANSNSASQDEGEPSLAQLISLQQEQYHKGELQINSSRSHAEDDIILNADSAPLLPEKREAVQKQDCAEFAEQLSAQLQRELDDKTNRTECRYLDGIGMGDLSEILGGGKKRSNGDLSAFRDELRERRLMLANLSTQPSLQQSPVSSSTSSLSSQTRSFTIQEEDGEEEEEEENESSYSLGVYEHCKISKFNYKRNRHYQLNPETAYLLQDDGDSDVREDEDDVIPEEEEQEEQDEDAEAEALEARGGDQLGEGMSDYGQRRRNMAALKVQPPTTQQQQQQPQKEPNQAPNLQQRPSNDSLEHSNSSTNSLDSPSQGGASTHHRYYHVFREGELDALINHHVASLHIVSSYYERASWCVVAEKVQVWTI

Comments:

TRMT9B regulates synaptogenesis through a methyltransferase-dependent mechanism; TRMT9B might also function as a tRNA wobble uridine methyltransferase under specific conditions or methylate only one or a few, possibly brain-enriched tRNAs .





Alpha Fold Predicted Structure:






Clear Selection and Reset Camera

Protein sequence:

M L S A E L A S S T A L L N A S Y Q R S N G P A K D E V C P S T I Y D K C N T T T G A A A A T M T K Q L T T A T A T N A A S S I G Q P G D L A P T V I S P T A P S T L T T G G A G G A G A G G T I S P V S E A T K T A P P P Q P V E E K P S S S D A S G R S A A L E R A Y V H D V Y E H C E E P T G P V R P R M A H F L S G L D P G S V V C D V G C G S G R Y L T Q C N P A I C T I G V E R C Y R L S K V A H E K G G E V A L C D N L E L P F R D D S F D A V L S L A V V H H F A T T E R R V Q A L R E L A R I L R I G G R V V I T V W A L E Q R H R R F E S Q D V L I P W Q P P K N R N Y S Y S D E E D D D N F Q P P Y H A Y T E D S T N S S R S A G D G D S S S L S S S S P G E S C Y S F V R R A I Q K L A R G R R H A W F M D S W S S K D T K N D S S L D Y E D A K D L P I E L R R L E D F E D F P D P P L S A G L K S R S L G S I L Q P P P R Q I V R S R S S V P S L G G P L I P G E S K A S A A A L L L N N P E S Q Q L Q L Q L Q L N G R H S P T T T A S A G N T L S R R P K L I K Q K Q S L C D D D A A T P P A P E S F Q V V S S L N G S N G V V S S S L Y T K S G C Y A G N F H Q H A S A T A T P P S G D S G E G G V T G G P T G G P T F L R K Q S S L N E D L M A C N R L R E K E R V R K R I Q K Q T S L N E A F L C R S A L F S K R L Q V I R E G F T T K I K S S T G S L E R V T K T G I S K L I Q N I K S G P Q A Q T N P A Q H P V Q L D K N A T L N N N N K Q G V A A T A H Q H H H H H H H H P V H H L S H L I L P A S S T S A P V T Y C S S V E C T M S N L C H C S Q Y Q Q E C P A C A D G G Q G D K A R R H S R E S G S D S S K D S S L Q S D T S I E S E D S F A S V I F I P K P E Q H Q Q Q L N Y Q Q Q H Q N S N S S S S N S S S S N G Q R A Q G A A G R D Q G V N P G S R L P P T H S V P T S P L I M P C P P T P A H S P A A I Q G T V T S P P Q S T S A V S A A M A I L T P P S K P A R F S F D E A H I K L Q K E Q H V D L Q K E L P K E K K E P L K V L P K E P L K E S P P V R R I T R Q A I R D L P P I P K F R K Q Q S L Q L Q R Q S F P I V R R A S G S G V S T S A S T T S L A T K L L S L E L F N P A T D D L D S D S S E P S S P D S I D S V I S A P R S A K V P S G S E E G E A A S A N S N S A S Q D E G E P S L A Q L I S L Q Q E Q Y H K G E L Q I N S S R S H A E D D I I L N A D S A P L L P E K R E A V Q K Q D C A E F A E Q L S A Q L Q R E L D D K T N R T E C R Y L D G I G M G D L S E I L G G G K K R S N G D L S A F R D E L R E R R L M L A N L S T Q P S L Q Q S P V S S S T S S L S S Q T R S F T I Q E E D G E E E E E E E N E S S Y S L G V Y E H C K I S K F N Y K R N R H Y Q L N P E T A Y L L Q D D G D S D V R E D E D D V I P E E E E Q E E Q D E D A E A E A L E A R G G D Q L G E G M S D Y G Q R R R N M A A L K V Q P P T T Q Q Q Q Q Q P Q K E P N Q A P N L Q Q R P S N D S L E H S N S S T N S L D S P S Q G G A S T H H R Y Y H V F R E G E L D A L I N H H V A S L H I V S S Y Y E R A S W C V V A E K V Q V W T I

Secondary Structure Alphabet

  • G: 3-turn helix (310helix)
  • H: α-helix
  • I: 𝝅-helix (5 - turn helix)
  • T: Hydrogen Bonded Turn
  • B: β-sheet
  • S: Bend
  • C: Coil (residues not present in any of the above conformations)
  • N: Not assigned

Download PDB Structures & DSSP Secondary Structures:

Alpha Fold Pdb Files   AF-Q9VBJ3-F1.pdb  
Alpha Fold Pdbx/mmCIF Files   AF-Q9VBJ3-F1.cif  
DSSP Secondary Structures   Q9VBJ3.dssp  





Publications:

Title Authors Journal Details PubMed Id DOI
Expanded tRNA methyltransferase family member TRMT9B regulates synaptic growth and function Caley A Hogan # 1, Scott J Gratz # 2, Jennifer L Dumouchel # 3, Rajan S Thakur 2, Ambar Delgado 2, Jenna M Lentini 4, Kimberly R Madhwani 5, Dragony Fu 4, Kate M O'Connor-Giles [details] 37642556 10.15252/embr.202356808