Modomics - A Database of RNA Modifications

ID Card:

Full name: Multifunctional methyltransferase subunit TRM112
GI: 1730682
Orf: YNR046W
COG: COG2835
UniProt: P53738
Structures: | 5CM2 |


PDB Structures:


5CM2

Structure Description:

Title: Structure of Y. lipolytica Trm9-Trm112 complex, a methyltransferase modifying U34 in the anticodon loop of some tRNAs
Classification: TRANSFERASE
Technique: X-Ray Diffraction
Resolution: 2.5
R value free: 0.242
R value observed: 0.201
R value work: 0.199

Abstract of the PDB Structure's related Publication:

Most of the factors involved in translation (tRNA, rRNA and proteins) are subject to post-transcriptional and post-translational modifications, which participate in the fine-tuning and tight control of ribosome and protein synthesis processes. In eukaryotes, Trm112 acts as an obligate activating platform for at least four methyltransferases (MTase) involved in the modification of 18S rRNA (Bud23), tRNA (Trm9 and Trm11) and translation termination factor eRF1 (Mtq2). Trm112 is then at a nexus between ribosome synthesis and function. Here, we present a structure-function analysis of the Trm9-Trm112 complex, which is involved in the 5-methoxycarbonylmethyluridine (mcm(5)U) modification of the tRNA anticodon wobble position and hence promotes translational fidelity. We also compare the known crystal structures of various Trm112-MTase complexes, highlighting the structural plasticity allowing Trm112 to interact through a very similar mode with its MTase partners, although those share less than 20% sequence identity.

Download RCSB-PDB Structures:

Pdb Files   5CM2.pdb  
Pdbx/mmCIF Files   5CM2.cif  


Protein sequence:

MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVLTVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHIYYIKNGIPNLLLPPHLV

Comments:

Trm112p makes complexes with Ttm11p, Trm9p and Mtq2c.







Publications: