| ID | Type | Subtype | Feature | Organism | Sequence |
|---|---|---|---|---|---|
| 225 | rRNA | 23S | LSU | Sulfolobus solfataricus | |
| 707 | rRNA | 23S | LSU | Pyrococcus abyssi | |
| 1019 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1020 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1021 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1022 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1023 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1024 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1025 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1026 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1027 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1028 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1029 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1030 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1031 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1032 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCUGUGGGGAGCCGCACG-GA-GGCGAAGAACCACAGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AACGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUUCACGAAG-UC-UC-U--UGGAA-U-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUGAAGACCAGUA---CGCUG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUUGAC--GAAU-GACCGAGACGCGA-GUCUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGUAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCUGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGCAGG-GGCGAGAGCUCCUGUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCUCACCGCA-AC-UCGA-CUGAGACGAAAUGGGAAACAGGUUAAUAUUCCUGUGCCA-UCAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCCGG--GC-AUCGC----------CCGGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUGAU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCAAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGUCAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUGACUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1033 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCUGUGGGGAGCCGCACG-GA-GGCGAAGAACCACAGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AACGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUUCACGAAG-UC-UC-U--UGGAA-U-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUGAAGACCAGUA---CGCUG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUUGAC--GAAU-GACCGAGACGCGA-GUCUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGUAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCUGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGCAGG-GGCGAGAGCUCCUGUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCUCACCGCA-AC-UCGA-CUGAGACGAAAUGGGAAACAGGUUAAUAUUCCUGUGCCA-UCAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCCGG--GC-AUCGC----------CCGGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUGAU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCAAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGUCAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUGACUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1034 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCUGUGGGGAGCCGCACG-GA-GGCGAAGAACCACAGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AACGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUUCACGAAG-UC-UC-U--UGGAA-U-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUGAAGACCAGUA---CGCUG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUUGAC--GAAU-GACCGAGACGCGA-GUCUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGUAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCUGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGCAGG-GGCGAGAGCUCCUGUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCUCACCGCA-AC-UCGA-CUGAGACGAAAUGGGAAACAGGUUAAUAUUCCUGUGCCA-UCAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCCGG--GC-AUCGC----------CCGGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUGAU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCAAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGUCAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUGACUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1036 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCUGUGGGGAGCCGCACG-GA-GGCGAAGAACCACAGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AACGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUUCACGAAG-UC-UC-U--UGGAA-U-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUGAAGACCAGUA---CGCUG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUUGAC--GAAU-GACCGAGACGCGA-GUCUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGUAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCUGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGCAGG-GGCGAGAGCUCCUGUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCUCACCGCA-AC-UCGA-CUGAGACGAAAUGGGAAACAGGUUAAUAUUCCUGUGCCA-UCAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCCGG--GC-AUCGC----------CCGGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUGAU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGUCAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUGACUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1037 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCUGUGGGGAGCCGCACG-GA-GGCGAAGAACCACAGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AACGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUUCACGAAG-UC-UC-U--UGGAA-U-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUGAAGACCAGUA---CGCUG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUUGAC--GAAU-GACCGAGACGCGA-GUCUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGUAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCUGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGCAGG-GGCGAGAGCUCCUGUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCUCACCGCA-AC-UCGA-CUGAGACGAAAUGGGAAACAGGUUAAUAUUCCUGUGCCA-UCAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCCGG--GC-AUCGC----------CCGGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUGAU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCAAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGUCAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUGACUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1038 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCUGUGGGGAGCCGCACG-GA-GGCGAAGAACCACAGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AACGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUUCACGAAG-UC-UC-U--UGGAA-U-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUGAAGACCAGUA---CGCUG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUUGAC--GAAU-GACCGAGACGCGA-GUCUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGUAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCUGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGCAGG-GGCGAGAGCUCCUGUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCUCACCGCA-AC-UCGA-CUGAGACGAAAUGGGAAACAGGUUAAUAUUCCUGUGCCA-UCAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCCGG--GC-AUCGC----------CCGGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUGAU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCAAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGUCAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUGACUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1039 | rRNA | 23S | LSU | Haloarcula marismortui | --------------------UAUG-CCAGCUGGUGGAUUGC-UCGGCUCAGG---CGCUGAUGAAGGACGUGCCAAGCUGCGAUA-AGCCAUGGGGAGCCGCACG-GA-GGCGAAGAACCAUGGAUU-UCCGAAUGAGAAU--CUCU----------AAC------------------AAUUGCUUCGC-------------------------------------GCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAAC--GC--AAUGUGAUGUCGUUAGUA-ACCGCGAGUGAACGCGAUAC-AGCCCAAACCGAA-----GCCCUC---ACGGGC------AAUGUGGUGUCA-GGGC--UACCUCUC------------------AUCAGCC--GACCGU--CUCGACGAAG-UC-UC-U--UGGAA-C-AGA-G---C-GUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUA---CGACG----U-GCG-GUAG-----UGCCAGAGUAGCGGGGGUUGGAUA-UCCCUCGCGAAUA-------A-CGCAGGCAUCGA-CUGCGAAGGCUAAACA-CA-ACCUGAGACCGAUAGUGAACA-AGUAGUGUGAACGAACGCUGCAA-AGUACCCUC-AGAAGGG-AGGCGAAAUAGAGCAUGAAAUCAGUUGG--CGAUCGAGCGACA-GGGCAUACAAGG------UCCCUCGAC--GAAU-GACCGACGCGCGA-GCGUCCAGUA-----A--GA-CU-CACGGG-AAG-----CCGAUGUUCUGUCGUACGUUUUGѢѢAAAACGAGCCAGGGAGUGUGU-CUGCAUGGCAA-GUCUAACCGGAGUAU--CCGGGG-AGGCACAGGGAAACCGACAUGGCCGCAGGGC----UU-------------GCCCGAGGGCCGC-CGUC-UUCAAGGGCGG-GGAGCCAUGUGGACACGACCCGAAUCCG-GACGAUCUACGCAUGGACAAGAUGAAGCGUGC-CGAAAGGCACGUGGAAGUCUGU-UAGAGUUGGUGUCCUACAAUACCC-UCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUA-GUCUGUGAGGUAGAGCGACCGAUUGG---------------------U--------------CCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGG-AUUCCGG-U-GCGC-GGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCC-CAAGUGUGGAUUA-AGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAA-UGA-UCGGGACUCAAAUCCACCACCGAGACCUGUCCG-U-ACCAC---UCAU--ACUGGUAAUCGAGUAGAU-UG-GCGCUCUAAUUGGAUGGAAGUAGG-GGUGAAAACUCCUAUGGACCGAUU-AGUGACGAAAAUCCUGGCCAUAGUAGCAGCG-AUAGUCGGGUGAGA-ACCCCGACGGCC-UAAUGGAU-AAGGGUUCCUC-AGC-ACUGC-UGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCA-AC-UCGA-CUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCA-CUAUGC------------AGUGAAA---------------------GUU------GACGCCCUGGGGUCGAUCA-CGCUGG--GC-AUCGC----------CCAGUCGAACC-G-U--CCAACU-CCGUGGAA-GCCGUAAUGGCAGGAAGCG--GACGAAC-------GGCGGCAUAG------GGAAA---CG------UGAUUCA-ACCUGGGGCCCAUGAAA-A--GAC--GA----------------GCAUAGU--GUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCC-AAGGCCUGUCGGGAGCAACCAA-CGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCU--CC----GGAAC------------------------GG-----AGCAGGUCGCAGUGACUCGGAA-GCUCGGACUGUCUAGUAACAACAUA-GGUGACCGCAAAUCCGCA-AGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGG--------GGG----UCUUAA--------------------------------------------------------GGU---------------AGCGUAGUACCUUGCCGCA--UCAGU------------AGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUG-------------UCCCAACGUUGGGCCCGGUGAACUGUACA-UUCCAG-UGCGGAGU----------------CUGGAGACACCCAGG------------GGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA-------------------------------------------------CUCUCACUCC-GGGA----------GGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGG-----GACCCGGCGAAGAGUG-CAAGAGCAAA-AGAUAGCUUGACAGUGUUCUUCCCAACG-AGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAG---CCUGC-----UUGAUGCGGGCA-AUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUJ#UUCGCCUAUUAAAGGAGGUCGUGAGCUGGGΔUPAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUG--U-AGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUC-GAGAGAGCACGUGCCGGGUAGCCACGCCACAC-GGGG-UAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAA-AAGAGACACCGC-------------------------------------------CGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAG-GUAA---------C-GAGACGUUAAGCCC-ACGAGCACUAACAGACCAA---------------- |
| 1040 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1041 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1043 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1044 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1045 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1046 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1047 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1048 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1049 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1050 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1051 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1052 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1053 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1054 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1055 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1056 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1057 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1058 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1059 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1060 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1061 | rRNA | 23S | LSU | Haloarcula marismortui | |
| 1074 | rRNA | 50S | LSU | Haloarcula marismortui |
In our latest update, we've incorporated new functionalities in the user interface to enhance data accessibility. Now, users have the option to download aligned sequences in FASTA format directly. Utilizing the available drop-down menus, you can not only view specific sequences but also filter the ones you wish to download. Check boxes allow you to choose between downloading sequences with or without modifications. Unlike the RNA sequences section, where filters are more dynamic, the alignment interface categorizes sequences based on Rfam families, leaving only the organism filter as a variable drop-down option.