General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000493217
Gene ID:	ENSG00000166925
Gene Name:	TSC22D4
Sequence (UNICHARACTER ENCODING)	GGGGAGCCGAGGAGCGGAGACACGGACCCAGCAGGGUCACGCGGGAGGAGACUCGGGACACCCACUCGCUGGCUGCCACCGGGAGCAGAGGGGGGCUCGGCCGCCCCCUCCCACAUCAGUCUCCAGACCCUUGGGGCUUCAGAGGCCGCUCCUAGGCUCCUCGGAGGAGGCGCGGGUUUCUUCUUUUCCGGAGAGCAAACUUUCCUCGGAGAUGCCUGGCAGGAUGAGCCGCGGCCCCCGGAGAGGACGGGACAGCCUCUGAUCGCCGCCUGCGUGCCCCGCCACUGCCCAUGGCCAGGAGGCCCCAGGGAACGGACAGCCCGACCUCUUAGGCGCCGGGACCCUCAGGCUCAGAUCAGUGGCCGAGGCCCCAGAGUUUGCAAACUCAGCUCUGGAGUUCAGCAGCAACAGCAGCAGGAAAAACCUGCCCCUGCUCCCCCCUCCCGCCACCUCCCCUCUCCUCUUCUCCCCUCACCCAGCAGGCACCCCCGGUUCCCGCCAGGCCCUCCUGCCAUGUCGGACCCAGACGUCCCCAGGGGCUCGGAUGUCCCCGCCAUGUGGCCCCCUUGUUCCAGGGGUGCCUGAGCCCCUUCAAGGAGCCCCAACCCACCCCCAACCUUGGCCCAGCCCUGAGCCCCAGGGЖCCAUGAGCGGGGGCAAGAAGAAGAGUAGUUUCCAAAUCACCAGCGUCACCACGGЖCUAUGAGGGCCCUGGGAGCCCAGGGGCUUCGGAUCCCCCUACCCCACAGCCCCCAACCGGGCCCCCGCCCCGCCUGCCCAAUGGGGAGCCCAGCCCCGAUCCGGGGGGCAAGGGCACCCCCCGGAAUGGCUCCCCACCACCUGGGGCCCCUUCCPCCCGUUUCCGGGUGGUGAAGCUGCCCCACGGCCUGGGAGAGCCUUAUCGCCGCGGUCGCUGGACGUGUGUGGAUGUUUAUGAGCGAGЖCCUGGAGCCCCACAGCUUCGGCGGЖCUCCUGGAGGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGGCAGAUCUUUGGAUUCCAGGUUGGAGCUGGCCAGCCUCGGCCUGGGCGCCCCCACCCCACCGUCAGGCCUGUCUCAGGGCCCCACCPCCUGGCUCCGUCCACCCCCCACCUCUCCUGGЖCCUCAGGCCCGCUCCUUCACUGGGGGACUGGGCCAGCUGGUGGUGCCCAGCAAAGCCAAGGCAGAGAAACCCCCACUGUCGGCCUCCUCACCCCAGCAGCGCCCCCCAGAGCCUGAGACCGGUGAGAGUGCGGGCACAPCCCGGGCUGCCACGCCCCUGCCCUCUCUGAGGGUGGAAGCGGAGGCUGGGGGCUCAGGGGCCAGGACCCCUCCACUGUCCCGGAGGAAAGCUGUAGACAUGCGGCUGCGGAUGGAGUUGGGUGCUCCAGAAGAGAUGGGGCAGGUGCCCCCACUUGACUCUCGCCCCAGCUCCCCAGCCCUCUACUUCACCCACGAUGCCAGCCUGGUUCACAAAUCUCCAGACCCCUUCGGAGCAGUAGCAGCUCAGAAGUUCAGCCUGGCCCACUCCAUGUUGGCCAUCAGUGGUCACCUAGACAGCGACGAUGAUAGGUAGGUGGGCUUCGUGGGGUGGUGGGGCGUGGGGUUCAGGUUCCCCGCCCAGCACCCGGGGUAGCUGUAAGAAAGUGCCUGGUAGGCAUCCUUCCCCCAGGUUGAACUUGGAGAGGACCUCUUAGAGAAACCUGGCCUGGGCAUAGCCACUGCACACAGUUGAUUUCGGACCCACUCCCUCUCUGUGGAGAGGGCUGGGUGGGACUCCCUGGCUCAGAACUGUCAGGUCACAGACUUUUUUAGAGUCUGAAGGGAGUCAUUGUUGUCAGAUUCCAGAGCUCUUGCAGAUUUAGAGAUCAUCUGGCCAACCCAGGAACCCACUGGCAAAUGCAUGCUCUAGACAGAAUAGCAAAUCAGGCCGGGGCACAGUGGCUCCCGCCUGUACUCAUAGUGCUUUGGGAGGCCCAGGCAGGAAAAUUGCUUGAGGCCAGGAGUUCAAGACCAAGCCCUGGCAAUGUAGCGAGACCUCAUCUCUAAAAAGAAAAA
Sequence (SHORT NAMES ENCODING)	GGGGAGCCGAGGAGCGGAGACACGGACCCAGCAGGGUCACGCGGGAGGAGACUCGGGACACCCACUCGCUGGCUGCCACCGGGAGCAGAGGGGGGCUCGGCCGCCCCCUCCCACAUCAGUCUCCAGACCCUUGGGGCUUCAGAGGCCGCUCCUAGGCUCCUCGGAGGAGGCGCGGGUUUCUUCUUUUCCGGAGAGCAAACUUUCCUCGGAGAUGCCUGGCAGGAUGAGCCGCGGCCCCCGGAGAGGACGGGACAGCCUCUGAUCGCCGCCUGCGUGCCCCGCCACUGCCCAUGGCCAGGAGGCCCCAGGGAACGGACAGCCCGACCUCUUAGGCGCCGGGACCCUCAGGCUCAGAUCAGUGGCCGAGGCCCCAGAGUUUGCAAACUCAGCUCUGGAGUUCAGCAGCAACAGCAGCAGGAAAAACCUGCCCCUGCUCCCCCCUCCCGCCACCUCCCCUCUCCUCUUCUCCCCUCACCCAGCAGGCACCCCCGGUUCCCGCCAGGCCCUCCUGCCAUGUCGGACCCAGACGUCCCCAGGGGCUCGGAUGUCCCCGCCAUGUGGCCCCCUUGUUCCAGGGGUGCCUGAGCCCCUUCAAGGAGCCCCAACCCACCCCCAACCUUGGCCCAGCCCUGAGCCCCAGGGm6ACCAUGAGCGGGGGCAAGAAGAAGAGUAGUUUCCAAAUCACCAGCGUCACCACGGm6ACUAUGAGGGCCCUGGGAGCCCAGGGGCUUCGGAUCCCCCUACCCCACAGCCCCCAACCGGGCCCCCGCCCCGCCUGCCCAAUGGGGAGCCCAGCCCCGAUCCGGGGGGCAAGGGCACCCCCCGGAAUGGCUCCCCACCACCUGGGGCCCCUUCCYCCCGUUUCCGGGUGGUGAAGCUGCCCCACGGCCUGGGAGAGCCUUAUCGCCGCGGUCGCUGGACGUGUGUGGAUGUUUAUGAGCGAGm6ACCUGGAGCCCCACAGCUUCGGCGGm6ACUCCUGGAGGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGGCAGAUCUUUGGAUUCCAGGUUGGAGCUGGCCAGCCUCGGCCUGGGCGCCCCCACCCCACCGUCAGGCCUGUCUCAGGGCCCCACCYCCUGGCUCCGUCCACCCCCCACCUCUCCUGGm6ACCUCAGGCCCGCUCCUUCACUGGGGGACUGGGCCAGCUGGUGGUGCCCAGCAAAGCCAAGGCAGAGAAACCCCCACUGUCGGCCUCCUCACCCCAGCAGCGCCCCCCAGAGCCUGAGACCGGUGAGAGUGCGGGCACAYCCCGGGCUGCCACGCCCCUGCCCUCUCUGAGGGUGGAAGCGGAGGCUGGGGGCUCAGGGGCCAGGACCCCUCCACUGUCCCGGAGGAAAGCUGUAGACAUGCGGCUGCGGAUGGAGUUGGGUGCUCCAGAAGAGAUGGGGCAGGUGCCCCCACUUGACUCUCGCCCCAGCUCCCCAGCCCUCUACUUCACCCACGAUGCCAGCCUGGUUCACAAAUCUCCAGACCCCUUCGGAGCAGUAGCAGCUCAGAAGUUCAGCCUGGCCCACUCCAUGUUGGCCAUCAGUGGUCACCUAGACAGCGACGAUGAUAGGUAGGUGGGCUUCGUGGGGUGGUGGGGCGUGGGGUUCAGGUUCCCCGCCCAGCACCCGGGGUAGCUGUAAGAAAGUGCCUGGUAGGCAUCCUUCCCCCAGGUUGAACUUGGAGAGGACCUCUUAGAGAAACCUGGCCUGGGCAUAGCCACUGCACACAGUUGAUUUCGGACCCACUCCCUCUCUGUGGAGAGGGCUGGGUGGGACUCCCUGGCUCAGAACUGUCAGGUCACAGACUUUUUUAGAGUCUGAAGGGAGUCAUUGUUGUCAGAUUCCAGAGCUCUUGCAGAUUUAGAGAUCAUCUGGCCAACCCAGGAACCCACUGGCAAAUGCAUGCUCUAGACAGAAUAGCAAAUCAGGCCGGGGCACAGUGGCUCCCGCCUGUACUCAUAGUGCUUUGGGAGGCCCAGGCAGGAAAAUUGCUUGAGGCCAGGAGUUCAAGACCAAGCCCUGGCAAUGUAGCGAGACCUCAUCUCUAAAAAGAAAAA
Sequence (MODOMICS CODE ENCODING)	GGGGAGCCGAGGAGCGGAGACACGGACCCAGCAGGGUCACGCGGGAGGAGACUCGGGACACCCACUCGCUGGCUGCCACCGGGAGCAGAGGGGGGCUCGGCCGCCCCCUCCCACAUCAGUCUCCAGACCCUUGGGGCUUCAGAGGCCGCUCCUAGGCUCCUCGGAGGAGGCGCGGGUUUCUUCUUUUCCGGAGAGCAAACUUUCCUCGGAGAUGCCUGGCAGGAUGAGCCGCGGCCCCCGGAGAGGACGGGACAGCCUCUGAUCGCCGCCUGCGUGCCCCGCCACUGCCCAUGGCCAGGAGGCCCCAGGGAACGGACAGCCCGACCUCUUAGGCGCCGGGACCCUCAGGCUCAGAUCAGUGGCCGAGGCCCCAGAGUUUGCAAACUCAGCUCUGGAGUUCAGCAGCAACAGCAGCAGGAAAAACCUGCCCCUGCUCCCCCCUCCCGCCACCUCCCCUCUCCUCUUCUCCCCUCACCCAGCAGGCACCCCCGGUUCCCGCCAGGCCCUCCUGCCAUGUCGGACCCAGACGUCCCCAGGGGCUCGGAUGUCCCCGCCAUGUGGCCCCCUUGUUCCAGGGGUGCCUGAGCCCCUUCAAGGAGCCCCAACCCACCCCCAACCUUGGCCCAGCCCUGAGCCCCAGGG2000000006ACCAUGAGCGGGGGCAAGAAGAAGAGUAGUUUCCAAAUCACCAGCGUCACCACGG2000000006ACUAUGAGGGCCCUGGGAGCCCAGGGGCUUCGGAUCCCCCUACCCCACAGCCCCCAACCGGGCCCCCGCCCCGCCUGCCCAAUGGGGAGCCCAGCCCCGAUCCGGGGGGCAAGGGCACCCCCCGGAAUGGCUCCCCACCACCUGGGGCCCCUUCC2000000009UCCCGUUUCCGGGUGGUGAAGCUGCCCCACGGCCUGGGAGAGCCUUAUCGCCGCGGUCGCUGGACGUGUGUGGAUGUUUAUGAGCGAG2000000006ACCUGGAGCCCCACAGCUUCGGCGG2000000006ACUCCUGGAGGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGGCAGAUCUUUGGAUUCCAGGUUGGAGCUGGCCAGCCUCGGCCUGGGCGCCCCCACCCCACCGUCAGGCCUGUCUCAGGGCCCCACC2000000009UCCUGGCUCCGUCCACCCCCCACCUCUCCUGG2000000006ACCUCAGGCCCGCUCCUUCACUGGGGGACUGGGCCAGCUGGUGGUGCCCAGCAAAGCCAAGGCAGAGAAACCCCCACUGUCGGCCUCCUCACCCCAGCAGCGCCCCCCAGAGCCUGAGACCGGUGAGAGUGCGGGCACA2000000009UCCCGGGCUGCCACGCCCCUGCCCUCUCUGAGGGUGGAAGCGGAGGCUGGGGGCUCAGGGGCCAGGACCCCUCCACUGUCCCGGAGGAAAGCUGUAGACAUGCGGCUGCGGAUGGAGUUGGGUGCUCCAGAAGAGAUGGGGCAGGUGCCCCCACUUGACUCUCGCCCCAGCUCCCCAGCCCUCUACUUCACCCACGAUGCCAGCCUGGUUCACAAAUCUCCAGACCCCUUCGGAGCAGUAGCAGCUCAGAAGUUCAGCCUGGCCCACUCCAUGUUGGCCAUCAGUGGUCACCUAGACAGCGACGAUGAUAGGUAGGUGGGCUUCGUGGGGUGGUGGGGCGUGGGGUUCAGGUUCCCCGCCCAGCACCCGGGGUAGCUGUAAGAAAGUGCCUGGUAGGCAUCCUUCCCCCAGGUUGAACUUGGAGAGGACCUCUUAGAGAAACCUGGCCUGGGCAUAGCCACUGCACACAGUUGAUUUCGGACCCACUCCCUCUCUGUGGAGAGGGCUGGGUGGGACUCCCUGGCUCAGAACUGUCAGGUCACAGACUUUUUUAGAGUCUGAAGGGAGUCAUUGUUGUCAGAUUCCAGAGCUCUUGCAGAUUUAGAGAUCAUCUGGCCAACCCAGGAACCCACUGGCAAAUGCAUGCUCUAGACAGAAUAGCAAAUCAGGCCGGGGCACAGUGGCUCCCGCCUGUACUCAUAGUGCUUUGGGAGGCCCAGGCAGGAAAAUUGCUUGAGGCCAGGAGUUCAAGACCAAGCCCUGGCAAUGUAGCGAGACCUCAUCUCUAAAAAGAAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	643	698	853	941	966	1093	1125	1264
Modification Positions	m6A	m6A	Y	m6A	m6A	Y	m6A	Y
Genomic Coordinates	7:100478041:-	7:100477986:-	7:100477831:-	7:100477743:-	7:100477718:-	7:100477591:-	7:100477559:-	7:100477420:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	ArijeGVTwYBw BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw BkoLW2CBToyL KTLz8piFYdwC WiQcrNTGZHPT BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8