General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000608317
Gene ID:	ENSG00000273344
Gene Name:	PAXIP1-DT
Sequence (UNICHARACTER ENCODING)	GGGGCGGCGCAUGCGCGCGGCGGAGGGGGGGGUGGGGCCUUGGGGCCGCGAGUGGGAGCGGGAGCGGUUCUGCGGCCUCCUCGGGCUUCUUGGCCCUGGGCGGAGUGGGAUUGGGUGUCCCGGCUGUUCGCAGUGGCCGCGAGUGCGGCCGGACCUGGAGUAGUACCUGAGCCGCUCUGGCCGAGCAAGGCGCGGGGCCCCGGUCUACACCGCGCUGGACCCGGCUAUGCCGUGACGGAAUUCCCGAGGCCGUAGCGCCACGCGAGACGCGCACUGGUGGCCUCCGCGGCGAGUCCUGGGGUCUCCGCAAGGCCUCAGUGCCCGAGCUGGGGЖCGUGCUGGGGGGAGGCCCGGCCCCGUCGCUGCCCGAGGCCCCGCUGUCCCGGCCGGACCGGCCUGGUCCCUGGCGUCCUGUCGGGUCCGCGCUGGAGGAGAGUCCCAGACAGCAGAGCCCGCGGUGCAGCUCCAGCCCCGGGAAGCCCCGCGCUCAACAGGUUAAUACUACACAGCGGCGAUUCUAAUGGUCACGCUUUUAUUUACAGCUCGCCUCCCUUCCGCCAAGAUUCACAGAACACGGCAGAGUGGCCUCGGGAUCACCUGCCCAAGACACCUGCACGACCGGAAGUUGGGAGAAGAAAUUAAGGCCAUGAUGAUGAACGCAGCCUUUCUCGUUUAUUUCCAAUCCCACAACAAACCGGAGUCCAGGAЖCUCAUGGGUGAUUAUCGGЖCUAUUACCUAGUCGUAAAЖCUGUGGAGCAUUGGUGUCUAAAGGAAUCUGAGACAGACCCGCAGUGUCUCCCCCACAUGCCUUAAGUCACUUCUGCCAAGCAGAAAAUCAUUUUUAAGUAAAUGUUAGUGAAAUUGGUUUUAAAAAAGAGAAGGGGCCGGGCGCGGUGGCUCACGCCUGUAAUCCUAUCCUUUAGGAGGCCGAGGUGGGCGGAUUGCCUGAGUUCAGGAGUUCGAGACCAGCCUGGGCGACACGGUGAAACCCCGUCCCUACUAAAAUACAAAAAAUUAGCCGGGCGUGGCGGCACGCGCCUGUAGUCCCAGCUACUCAGGAGGCUGAGGCAGGAGAAUGGCUUGAЖCUCGGGUGGGGGAGGUUGCAAUGAGCCGAGAUCGCGCCGCUGCACUCCAGCCUGGGCGACAGAGCGAGACUCUGUCUCUGAAAAAAAACAAAACAAAACGAGAAGGCUUUCAAAAUUACUCUGCGGUACACUAAUUUAACAGAUUAGAUCACUUUCCAGGCUPUAAGUUGGCCUUUGUUCUACCCUUUUUUUAGUGUAUGAUAAAAGUUGUGUUGGUUCGUUGAUCAGCAUGCAAUGAЖCUCUGGCUCUUGUUAAUCAGGUGACUACAGUUUUGUCCUUACAUUUGUAUGUAUGUCAUGAGUGGUUUUGUAUGGGCAGGAGGUAAЖCAACGCACAUUUAAAUAUACUUAAUGAUUUAUCAUUCCAAUGUUUUCUGGUUGUUUUAGUCUUUCAUUUGUCUCUUGAACAAUCUGAAACAUCCCUAUUCUAAGGCUAAAAAAUUUCCUUUACAAACUUAGGUUAAACAUUCCUAAUCUGAAAUCCAAAAUGCUCUAAAAUUCGAAUUUUUUUGAGUACUGACGUGACCCCACAAAUGGAAAAUUCCACACUUGCCCUCAUGUGACACUGGGUGACAGUCAAGUCACAAUCAAGCCUGGUGUGGUGGGCACCUGUAGUGCCAGCUACUCGGGAGGUUGAGCAGGAGGAUUGCUUGAGCCCAGGAGUUUGAGUCCAGCCUGGACGAUAUAGCCAGACCCUGUCUGUAAAAAAACAAAAACCAAAACAAAAAAAACAAUGAAAACAUUUUUUUUUAAAACGCCAUCAAAACUUUGUUUCAUGCACAAAAUUAUUUAAAAUAUAUAAUAUAACCUUACCUUCAGGCUAUGUGGGUAAGGUAAGGUGUAUGUGAAACAAAUGAAUUUCCCAUUUAGACUUGGGUCCCAUCCCCAAGAUAUCUUAUUAUGUAUAUGCAAAUAUUCCAAAUCAAAAAUAUCUGAAAUACUUUUGUCCCAAGCAUUUCAGAUAAAGGUUACUCAACCUGUAAUAAAAACACUCAGUGCUUGCCUGAAGGAAAAACCAAGAAUUUGUCAUCCAUCCUUAAAUUUUUAUGACACCCUUUGUAAUCAGGAAACCUUUUAAUACCUAAGAAUAUAUUUGAUAUAUUCUGGUAUAUGUUUAUCAUUCUGAUGUUUAAUGUUCUAUGUUGGGCAUAUAUCAGUGUAAUAAAUACAUUAGAUCCAAAUACAGAUCAUGCUGCCUUUUUA
Sequence (SHORT NAMES ENCODING)	GGGGCGGCGCAUGCGCGCGGCGGAGGGGGGGGUGGGGCCUUGGGGCCGCGAGUGGGAGCGGGAGCGGUUCUGCGGCCUCCUCGGGCUUCUUGGCCCUGGGCGGAGUGGGAUUGGGUGUCCCGGCUGUUCGCAGUGGCCGCGAGUGCGGCCGGACCUGGAGUAGUACCUGAGCCGCUCUGGCCGAGCAAGGCGCGGGGCCCCGGUCUACACCGCGCUGGACCCGGCUAUGCCGUGACGGAAUUCCCGAGGCCGUAGCGCCACGCGAGACGCGCACUGGUGGCCUCCGCGGCGAGUCCUGGGGUCUCCGCAAGGCCUCAGUGCCCGAGCUGGGGm6ACGUGCUGGGGGGAGGCCCGGCCCCGUCGCUGCCCGAGGCCCCGCUGUCCCGGCCGGACCGGCCUGGUCCCUGGCGUCCUGUCGGGUCCGCGCUGGAGGAGAGUCCCAGACAGCAGAGCCCGCGGUGCAGCUCCAGCCCCGGGAAGCCCCGCGCUCAACAGGUUAAUACUACACAGCGGCGAUUCUAAUGGUCACGCUUUUAUUUACAGCUCGCCUCCCUUCCGCCAAGAUUCACAGAACACGGCAGAGUGGCCUCGGGAUCACCUGCCCAAGACACCUGCACGACCGGAAGUUGGGAGAAGAAAUUAAGGCCAUGAUGAUGAACGCAGCCUUUCUCGUUUAUUUCCAAUCCCACAACAAACCGGAGUCCAGGAm6ACUCAUGGGUGAUUAUCGGm6ACUAUUACCUAGUCGUAAAm6ACUGUGGAGCAUUGGUGUCUAAAGGAAUCUGAGACAGACCCGCAGUGUCUCCCCCACAUGCCUUAAGUCACUUCUGCCAAGCAGAAAAUCAUUUUUAAGUAAAUGUUAGUGAAAUUGGUUUUAAAAAAGAGAAGGGGCCGGGCGCGGUGGCUCACGCCUGUAAUCCUAUCCUUUAGGAGGCCGAGGUGGGCGGAUUGCCUGAGUUCAGGAGUUCGAGACCAGCCUGGGCGACACGGUGAAACCCCGUCCCUACUAAAAUACAAAAAAUUAGCCGGGCGUGGCGGCACGCGCCUGUAGUCCCAGCUACUCAGGAGGCUGAGGCAGGAGAAUGGCUUGAm6ACUCGGGUGGGGGAGGUUGCAAUGAGCCGAGAUCGCGCCGCUGCACUCCAGCCUGGGCGACAGAGCGAGACUCUGUCUCUGAAAAAAAACAAAACAAAACGAGAAGGCUUUCAAAAUUACUCUGCGGUACACUAAUUUAACAGAUUAGAUCACUUUCCAGGCUYUAAGUUGGCCUUUGUUCUACCCUUUUUUUAGUGUAUGAUAAAAGUUGUGUUGGUUCGUUGAUCAGCAUGCAAUGAm6ACUCUGGCUCUUGUUAAUCAGGUGACUACAGUUUUGUCCUUACAUUUGUAUGUAUGUCAUGAGUGGUUUUGUAUGGGCAGGAGGUAAm6ACAACGCACAUUUAAAUAUACUUAAUGAUUUAUCAUUCCAAUGUUUUCUGGUUGUUUUAGUCUUUCAUUUGUCUCUUGAACAAUCUGAAACAUCCCUAUUCUAAGGCUAAAAAAUUUCCUUUACAAACUUAGGUUAAACAUUCCUAAUCUGAAAUCCAAAAUGCUCUAAAAUUCGAAUUUUUUUGAGUACUGACGUGACCCCACAAAUGGAAAAUUCCACACUUGCCCUCAUGUGACACUGGGUGACAGUCAAGUCACAAUCAAGCCUGGUGUGGUGGGCACCUGUAGUGCCAGCUACUCGGGAGGUUGAGCAGGAGGAUUGCUUGAGCCCAGGAGUUUGAGUCCAGCCUGGACGAUAUAGCCAGACCCUGUCUGUAAAAAAACAAAAACCAAAACAAAAAAAACAAUGAAAACAUUUUUUUUUAAAACGCCAUCAAAACUUUGUUUCAUGCACAAAAUUAUUUAAAAUAUAUAAUAUAACCUUACCUUCAGGCUAUGUGGGUAAGGUAAGGUGUAUGUGAAACAAAUGAAUUUCCCAUUUAGACUUGGGUCCCAUCCCCAAGAUAUCUUAUUAUGUAUAUGCAAAUAUUCCAAAUCAAAAAUAUCUGAAAUACUUUUGUCCCAAGCAUUUCAGAUAAAGGUUACUCAACCUGUAAUAAAAACACUCAGUGCUUGCCUGAAGGAAAAACCAAGAAUUUGUCAUCCAUCCUUAAAUUUUUAUGACACCCUUUGUAAUCAGGAAACCUUUUAAUACCUAAGAAUAUAUUUGAUAUAUUCUGGUAUAUGUUUAUCAUUCUGAUGUUUAAUGUUCUAUGUUGGGCAUAUAUCAGUGUAAUAAAUACAUUAGAUCCAAAUACAGAUCAUGCUGCCUUUUUA
Sequence (MODOMICS CODE ENCODING)	GGGGCGGCGCAUGCGCGCGGCGGAGGGGGGGGUGGGGCCUUGGGGCCGCGAGUGGGAGCGGGAGCGGUUCUGCGGCCUCCUCGGGCUUCUUGGCCCUGGGCGGAGUGGGAUUGGGUGUCCCGGCUGUUCGCAGUGGCCGCGAGUGCGGCCGGACCUGGAGUAGUACCUGAGCCGCUCUGGCCGAGCAAGGCGCGGGGCCCCGGUCUACACCGCGCUGGACCCGGCUAUGCCGUGACGGAAUUCCCGAGGCCGUAGCGCCACGCGAGACGCGCACUGGUGGCCUCCGCGGCGAGUCCUGGGGUCUCCGCAAGGCCUCAGUGCCCGAGCUGGGG2000000006ACGUGCUGGGGGGAGGCCCGGCCCCGUCGCUGCCCGAGGCCCCGCUGUCCCGGCCGGACCGGCCUGGUCCCUGGCGUCCUGUCGGGUCCGCGCUGGAGGAGAGUCCCAGACAGCAGAGCCCGCGGUGCAGCUCCAGCCCCGGGAAGCCCCGCGCUCAACAGGUUAAUACUACACAGCGGCGAUUCUAAUGGUCACGCUUUUAUUUACAGCUCGCCUCCCUUCCGCCAAGAUUCACAGAACACGGCAGAGUGGCCUCGGGAUCACCUGCCCAAGACACCUGCACGACCGGAAGUUGGGAGAAGAAAUUAAGGCCAUGAUGAUGAACGCAGCCUUUCUCGUUUAUUUCCAAUCCCACAACAAACCGGAGUCCAGGA2000000006ACUCAUGGGUGAUUAUCGG2000000006ACUAUUACCUAGUCGUAAA2000000006ACUGUGGAGCAUUGGUGUCUAAAGGAAUCUGAGACAGACCCGCAGUGUCUCCCCCACAUGCCUUAAGUCACUUCUGCCAAGCAGAAAAUCAUUUUUAAGUAAAUGUUAGUGAAAUUGGUUUUAAAAAAGAGAAGGGGCCGGGCGCGGUGGCUCACGCCUGUAAUCCUAUCCUUUAGGAGGCCGAGGUGGGCGGAUUGCCUGAGUUCAGGAGUUCGAGACCAGCCUGGGCGACACGGUGAAACCCCGUCCCUACUAAAAUACAAAAAAUUAGCCGGGCGUGGCGGCACGCGCCUGUAGUCCCAGCUACUCAGGAGGCUGAGGCAGGAGAAUGGCUUGA2000000006ACUCGGGUGGGGGAGGUUGCAAUGAGCCGAGAUCGCGCCGCUGCACUCCAGCCUGGGCGACAGAGCGAGACUCUGUCUCUGAAAAAAAACAAAACAAAACGAGAAGGCUUUCAAAAUUACUCUGCGGUACACUAAUUUAACAGAUUAGAUCACUUUCCAGGCU2000000009UUAAGUUGGCCUUUGUUCUACCCUUUUUUUAGUGUAUGAUAAAAGUUGUGUUGGUUCGUUGAUCAGCAUGCAAUGA2000000006ACUCUGGCUCUUGUUAAUCAGGUGACUACAGUUUUGUCCUUACAUUUGUAUGUAUGUCAUGAGUGGUUUUGUAUGGGCAGGAGGUAA2000000006ACAACGCACAUUUAAAUAUACUUAAUGAUUUAUCAUUCCAAUGUUUUCUGGUUGUUUUAGUCUUUCAUUUGUCUCUUGAACAAUCUGAAACAUCCCUAUUCUAAGGCUAAAAAAUUUCCUUUACAAACUUAGGUUAAACAUUCCUAAUCUGAAAUCCAAAAUGCUCUAAAAUUCGAAUUUUUUUGAGUACUGACGUGACCCCACAAAUGGAAAAUUCCACACUUGCCCUCAUGUGACACUGGGUGACAGUCAAGUCACAAUCAAGCCUGGUGUGGUGGGCACCUGUAGUGCCAGCUACUCGGGAGGUUGAGCAGGAGGAUUGCUUGAGCCCAGGAGUUUGAGUCCAGCCUGGACGAUAUAGCCAGACCCUGUCUGUAAAAAAACAAAAACCAAAACAAAAAAAACAAUGAAAACAUUUUUUUUUAAAACGCCAUCAAAACUUUGUUUCAUGCACAAAAUUAUUUAAAAUAUAUAAUAUAACCUUACCUUCAGGCUAUGUGGGUAAGGUAAGGUGUAUGUGAAACAAAUGAAUUUCCCAUUUAGACUUGGGUCCCAUCCCCAAGAUAUCUUAUUAUGUAUAUGCAAAUAUUCCAAAUCAAAAAUAUCUGAAAUACUUUUGUCCCAAGCAUUUCAGAUAAAGGUUACUCAACCUGUAAUAAAAACACUCAGUGCUUGCCUGAAGGAAAAACCAAGAAUUUGUCAUCCAUCCUUAAAUUUUUAUGACACCCUUUGUAAUCAGGAAACCUUUUAAUACCUAAGAAUAUAUUUGAUAUAUUCUGGUAUAUGUUUAUCAUUCUGAUGUUUAAUGUUCUAUGUUGGGCAUAUAUCAGUGUAAUAAAUACAUUAGAUCCAAAUACAGAUCAUGCUGCCUUUUUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	333	707	726	745	1082	1245	1321	1408
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A
Genomic Coordinates	7:155003753:+	7:155004127:+	7:155004146:+	7:155004165:+	7:155004502:+	7:155004665:+	7:155004741:+	7:155004828:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL Lny8GcCeVGc9 UKen6WEino9G Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 XUkp6ghERQML BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8