Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000449309
Gene ID: ENSG00000221909
Gene Name: FAM200A
Sequence (UNICHARACTER ENCODING) GUGACGCUUUCCCUGGGCUCUGAAGGCCAGGGGGCUUGGAUGUGAGUCUAGUGCUCCUGGUCCCCAAAGUCACAACCCCUUCUAUCCCAGCAUCCCAGACUUCUCCGGGCGGGGACAGAGUUGGACGUGCAUGGCUGUGUCCUGCAAUCCCCUCGCCACGACCGCCCGGGACGGAGUGGAAGCGGGUCCGUGCCCCCGUUCCUCGCGCCAGCCUCGGCGGUGGCAAGCGCUGUCCCCCAGCAGAGGUGUCCCUGGAUACAGGAUAGCAAAACCUGAUCUCAUAAAACCUAGGUCACAAAGGACAGCCCUGCAAAACAGACCCUAUUUGGAUCAAGUGAGCCAGUUCCUGGAACCUGAAUAAUGACUCCUGAAUCAAGGGAUACUACAGAUUUGUCUCCAGGGGGUACCCAGGAGAUGGAAGGCAUCGUGAUAGUGAAGGUGGAGGAGGAAGAUGAAGAAGACCAUUUUCAAAAGGAAAGAAACAAAGUAGAGUCAUCGCCACAAGUUCUCAGUCGCUCUACAACUAUGAAUGAGAGAGCCUUAUUGUCAUCGUAUUUAGUUGCAUAUAGAGUGGCAAAAGAGAAAAUGGCUCACACAGCGGCUGAAAAAAUUAUCCUUCCAGCAUGUAUGGЖCAUGGUACGGЖCAAUUUUUGAUGACAAAUCAGCUGAUAAACUAAGAЖCUAUACCUCUUAGUGAUAAUACAAUAUCUCGUCGAAUCUGUACGAUUGCAAAACAUUUGGAAGCAAUGCUUAUUACACGGCUGCAGUCCGGUAUAGЖCUUUGCAAUCCAACUCGAUGAGAGCACUGAUAUUGCAAGUUGUCCCACACUCUUGGUUUAUGUCAGAUAUGUGUGGCAAGAUGAUUUUGUAGAGGAUCUCUUAUGUUGUUUAAAUUUAAAUUCACAUAUAЖCUGGAUUAGAUUUAUUUACUGAAUUAGAAAACUGCCUUCUUGGUCAGUAUAAAUUAAACUGGAAACAUUGUAAAGGAAUUUCAAGUGAUGGAACAGCAAAUAUGACCGGAAAACACAGCAGACUUACUGAAAAAUUGUUAGAAGCAACCCACAACAAUGCUGUUUGGAAUCACUGUUUUAUUCAUCGAGAAGCUUUGGUAUCCAAAGAAAUUUCACCAAGUCUGAUGGAUGUAUUGAAAAAUGCAGUGAAAACUGUUAAUUUUAUUAAAGGAAGCUCACUGAAUAGCCGACUUCUCGAAAUAUUUUGUUCAGAGAUUGGAGUGAACCACACCCACUUAUUGUUUCAUACAGAAGUUCGUUGGCUUUCUCAAGGAAAAGUAUUGAGCAGAGUAUAUGAЖCUCAGGAACGAGAUUUACAUUUUUCUCGUUGAAAAGCAAUCUCAUUUGGCAAAUAUUUUUGAAGACGACAUUUGGGUAACAAAAUUGGCAUAUUUAAGUGAUAUUUUUGGCAUUCUUAAUGAAUUAAGCCUGAAAAUGCAGGGGAAAAACAAUGAUAUAUUUCAGUAUCUUGAACAUAUUCUAGGAUUCCAAAAGЖCGUUAUUAUUGUGGCAAGCAAGACUUAAAAGUAACCGCCCUAGCUACUAUAUGUUUCCAACAUUAUUGCAACACAUCGAAGAGAACAUUAUUAAUGAAGACUGCUUAAAAGAAAUAAAAUUAGAGAUAUUGUUGCAUCUCACUUCUUUGUCUCAAACUUUUAAUUAUUACUUUCCGGAAGAGAAAUUUGAAUCAUUAAAGGAAAAUAUUUGGAUGAAAGAUCCAUUUGCUUUUCAAAACCCAGAAUCAAUAAUUGAGUUAAACUUGGAGCCUGAAGAAGAGAAUGAAUUAUUGCAGCUCAGUUCAUCAUUCACACUAAAGAAUUAUUAUAAGAUAUUAAGUUUAUCAGCAUUUUGGAUUAAGAUUAAAGAUGЖCUUUCCACUGCUAAGUAGGAAGAGUAUAUUGCUGUUACUACCAUUCACAACUACAUAUUUGUGUGAACUAGGAUUUUCAAUCUUGACACGGUUAAAAACAAAGAAGAGAAAUAGGCUCAAUAGUGCACCAGAUAUGCGGGUAGCAUUAUCUUCAUGUGUUCCUGACUGGAAGGAACUUAUGAЖCAGACAAGCACACCCAUCACAUUAAAUACAAЖCUUUACAAAAUUCUGUGUAUAGCCAGGUGUGGUGGCUUACGCCUGUAAUCCCAGCAGUGGGAGACCGAGGUGGGCAGAUCACUUGAGUUCAAGACCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUAGAAACCUUAGCCAGGCGUGGUGGCACAUGCCUGCAGUCCCAGUUACUUGGGUGCCUGAGGCAGGAGAAUCUCUUAAACCAGGAAGGCAGAGAUUGCAGUGAGCUGAGAUAAUCCCACUGCAUUCCAGCCUGGGCAACAGCGUGAGACUUCAUCUCAAAAAAAAAAAAUUGUAUUUGUACUUUUAAAGGGAUUUUGCAGUAUGUUGUAGUUAAACGUUAAUAAAAUUAUAUUUGUAAUUAGGA
Sequence (SHORT NAMES ENCODING) GUGACGCUUUCCCUGGGCUCUGAAGGCCAGGGGGCUUGGAUGUGAGUCUAGUGCUCCUGGUCCCCAAAGUCACAACCCCUUCUAUCCCAGCAUCCCAGACUUCUCCGGGCGGGGACAGAGUUGGACGUGCAUGGCUGUGUCCUGCAAUCCCCUCGCCACGACCGCCCGGGACGGAGUGGAAGCGGGUCCGUGCCCCCGUUCCUCGCGCCAGCCUCGGCGGUGGCAAGCGCUGUCCCCCAGCAGAGGUGUCCCUGGAUACAGGAUAGCAAAACCUGAUCUCAUAAAACCUAGGUCACAAAGGACAGCCCUGCAAAACAGACCCUAUUUGGAUCAAGUGAGCCAGUUCCUGGAACCUGAAUAAUGACUCCUGAAUCAAGGGAUACUACAGAUUUGUCUCCAGGGGGUACCCAGGAGAUGGAAGGCAUCGUGAUAGUGAAGGUGGAGGAGGAAGAUGAAGAAGACCAUUUUCAAAAGGAAAGAAACAAAGUAGAGUCAUCGCCACAAGUUCUCAGUCGCUCUACAACUAUGAAUGAGAGAGCCUUAUUGUCAUCGUAUUUAGUUGCAUAUAGAGUGGCAAAAGAGAAAAUGGCUCACACAGCGGCUGAAAAAAUUAUCCUUCCAGCAUGUAUGGm6ACAUGGUACGGm6ACAAUUUUUGAUGACAAAUCAGCUGAUAAACUAAGAm6ACUAUACCUCUUAGUGAUAAUACAAUAUCUCGUCGAAUCUGUACGAUUGCAAAACAUUUGGAAGCAAUGCUUAUUACACGGCUGCAGUCCGGUAUAGm6ACUUUGCAAUCCAACUCGAUGAGAGCACUGAUAUUGCAAGUUGUCCCACACUCUUGGUUUAUGUCAGAUAUGUGUGGCAAGAUGAUUUUGUAGAGGAUCUCUUAUGUUGUUUAAAUUUAAAUUCACAUAUAm6ACUGGAUUAGAUUUAUUUACUGAAUUAGAAAACUGCCUUCUUGGUCAGUAUAAAUUAAACUGGAAACAUUGUAAAGGAAUUUCAAGUGAUGGAACAGCAAAUAUGACCGGAAAACACAGCAGACUUACUGAAAAAUUGUUAGAAGCAACCCACAACAAUGCUGUUUGGAAUCACUGUUUUAUUCAUCGAGAAGCUUUGGUAUCCAAAGAAAUUUCACCAAGUCUGAUGGAUGUAUUGAAAAAUGCAGUGAAAACUGUUAAUUUUAUUAAAGGAAGCUCACUGAAUAGCCGACUUCUCGAAAUAUUUUGUUCAGAGAUUGGAGUGAACCACACCCACUUAUUGUUUCAUACAGAAGUUCGUUGGCUUUCUCAAGGAAAAGUAUUGAGCAGAGUAUAUGAm6ACUCAGGAACGAGAUUUACAUUUUUCUCGUUGAAAAGCAAUCUCAUUUGGCAAAUAUUUUUGAAGACGACAUUUGGGUAACAAAAUUGGCAUAUUUAAGUGAUAUUUUUGGCAUUCUUAAUGAAUUAAGCCUGAAAAUGCAGGGGAAAAACAAUGAUAUAUUUCAGUAUCUUGAACAUAUUCUAGGAUUCCAAAAGm6ACGUUAUUAUUGUGGCAAGCAAGACUUAAAAGUAACCGCCCUAGCUACUAUAUGUUUCCAACAUUAUUGCAACACAUCGAAGAGAACAUUAUUAAUGAAGACUGCUUAAAAGAAAUAAAAUUAGAGAUAUUGUUGCAUCUCACUUCUUUGUCUCAAACUUUUAAUUAUUACUUUCCGGAAGAGAAAUUUGAAUCAUUAAAGGAAAAUAUUUGGAUGAAAGAUCCAUUUGCUUUUCAAAACCCAGAAUCAAUAAUUGAGUUAAACUUGGAGCCUGAAGAAGAGAAUGAAUUAUUGCAGCUCAGUUCAUCAUUCACACUAAAGAAUUAUUAUAAGAUAUUAAGUUUAUCAGCAUUUUGGAUUAAGAUUAAAGAUGm6ACUUUCCACUGCUAAGUAGGAAGAGUAUAUUGCUGUUACUACCAUUCACAACUACAUAUUUGUGUGAACUAGGAUUUUCAAUCUUGACACGGUUAAAAACAAAGAAGAGAAAUAGGCUCAAUAGUGCACCAGAUAUGCGGGUAGCAUUAUCUUCAUGUGUUCCUGACUGGAAGGAACUUAUGAm6ACAGACAAGCACACCCAUCACAUUAAAUACAAm6ACUUUACAAAAUUCUGUGUAUAGCCAGGUGUGGUGGCUUACGCCUGUAAUCCCAGCAGUGGGAGACCGAGGUGGGCAGAUCACUUGAGUUCAAGACCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUAGAAACCUUAGCCAGGCGUGGUGGCACAUGCCUGCAGUCCCAGUUACUUGGGUGCCUGAGGCAGGAGAAUCUCUUAAACCAGGAAGGCAGAGAUUGCAGUGAGCUGAGAUAAUCCCACUGCAUUCCAGCCUGGGCAACAGCGUGAGACUUCAUCUCAAAAAAAAAAAAUUGUAUUUGUACUUUUAAAGGGAUUUUGCAGUAUGUUGUAGUUAAACGUUAAUAAAAUUAUAUUUGUAAUUAGGA
Sequence (MODOMICS CODE ENCODING) GUGACGCUUUCCCUGGGCUCUGAAGGCCAGGGGGCUUGGAUGUGAGUCUAGUGCUCCUGGUCCCCAAAGUCACAACCCCUUCUAUCCCAGCAUCCCAGACUUCUCCGGGCGGGGACAGAGUUGGACGUGCAUGGCUGUGUCCUGCAAUCCCCUCGCCACGACCGCCCGGGACGGAGUGGAAGCGGGUCCGUGCCCCCGUUCCUCGCGCCAGCCUCGGCGGUGGCAAGCGCUGUCCCCCAGCAGAGGUGUCCCUGGAUACAGGAUAGCAAAACCUGAUCUCAUAAAACCUAGGUCACAAAGGACAGCCCUGCAAAACAGACCCUAUUUGGAUCAAGUGAGCCAGUUCCUGGAACCUGAAUAAUGACUCCUGAAUCAAGGGAUACUACAGAUUUGUCUCCAGGGGGUACCCAGGAGAUGGAAGGCAUCGUGAUAGUGAAGGUGGAGGAGGAAGAUGAAGAAGACCAUUUUCAAAAGGAAAGAAACAAAGUAGAGUCAUCGCCACAAGUUCUCAGUCGCUCUACAACUAUGAAUGAGAGAGCCUUAUUGUCAUCGUAUUUAGUUGCAUAUAGAGUGGCAAAAGAGAAAAUGGCUCACACAGCGGCUGAAAAAAUUAUCCUUCCAGCAUGUAUGG2000000006ACAUGGUACGG2000000006ACAAUUUUUGAUGACAAAUCAGCUGAUAAACUAAGA2000000006ACUAUACCUCUUAGUGAUAAUACAAUAUCUCGUCGAAUCUGUACGAUUGCAAAACAUUUGGAAGCAAUGCUUAUUACACGGCUGCAGUCCGGUAUAG2000000006ACUUUGCAAUCCAACUCGAUGAGAGCACUGAUAUUGCAAGUUGUCCCACACUCUUGGUUUAUGUCAGAUAUGUGUGGCAAGAUGAUUUUGUAGAGGAUCUCUUAUGUUGUUUAAAUUUAAAUUCACAUAUA2000000006ACUGGAUUAGAUUUAUUUACUGAAUUAGAAAACUGCCUUCUUGGUCAGUAUAAAUUAAACUGGAAACAUUGUAAAGGAAUUUCAAGUGAUGGAACAGCAAAUAUGACCGGAAAACACAGCAGACUUACUGAAAAAUUGUUAGAAGCAACCCACAACAAUGCUGUUUGGAAUCACUGUUUUAUUCAUCGAGAAGCUUUGGUAUCCAAAGAAAUUUCACCAAGUCUGAUGGAUGUAUUGAAAAAUGCAGUGAAAACUGUUAAUUUUAUUAAAGGAAGCUCACUGAAUAGCCGACUUCUCGAAAUAUUUUGUUCAGAGAUUGGAGUGAACCACACCCACUUAUUGUUUCAUACAGAAGUUCGUUGGCUUUCUCAAGGAAAAGUAUUGAGCAGAGUAUAUGA2000000006ACUCAGGAACGAGAUUUACAUUUUUCUCGUUGAAAAGCAAUCUCAUUUGGCAAAUAUUUUUGAAGACGACAUUUGGGUAACAAAAUUGGCAUAUUUAAGUGAUAUUUUUGGCAUUCUUAAUGAAUUAAGCCUGAAAAUGCAGGGGAAAAACAAUGAUAUAUUUCAGUAUCUUGAACAUAUUCUAGGAUUCCAAAAG2000000006ACGUUAUUAUUGUGGCAAGCAAGACUUAAAAGUAACCGCCCUAGCUACUAUAUGUUUCCAACAUUAUUGCAACACAUCGAAGAGAACAUUAUUAAUGAAGACUGCUUAAAAGAAAUAAAAUUAGAGAUAUUGUUGCAUCUCACUUCUUUGUCUCAAACUUUUAAUUAUUACUUUCCGGAAGAGAAAUUUGAAUCAUUAAAGGAAAAUAUUUGGAUGAAAGAUCCAUUUGCUUUUCAAAACCCAGAAUCAAUAAUUGAGUUAAACUUGGAGCCUGAAGAAGAGAAUGAAUUAUUGCAGCUCAGUUCAUCAUUCACACUAAAGAAUUAUUAUAAGAUAUUAAGUUUAUCAGCAUUUUGGAUUAAGAUUAAAGAUG2000000006ACUUUCCACUGCUAAGUAGGAAGAGUAUAUUGCUGUUACUACCAUUCACAACUACAUAUUUGUGUGAACUAGGAUUUUCAAUCUUGACACGGUUAAAAACAAAGAAGAGAAAUAGGCUCAAUAGUGCACCAGAUAUGCGGGUAGCAUUAUCUUCAUGUGUUCCUGACUGGAAGGAACUUAUGA2000000006ACAGACAAGCACACCCAUCACAUUAAAUACAA2000000006ACUUUACAAAAUUCUGUGUAUAGCCAGGUGUGGUGGCUUACGCCUGUAAUCCCAGCAGUGGGAGACCGAGGUGGGCAGAUCACUUGAGUUCAAGACCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUAGAAACCUUAGCCAGGCGUGGUGGCACAUGCCUGCAGUCCCAGUUACUUGGGUGCCUGAGGCAGGAGAAUCUCUUAAACCAGGAAGGCAGAGAUUGCAGUGAGCUGAGAUAAUCCCACUGCAUUCCAGCCUGGGCAACAGCGUGAGACUUCAUCUCAAAAAAAAAAAAUUGUAUUUGUACUUUUAAAGGGAUUUUGCAGUAUGUUGUAGUUAAACGUUAAUAAAAUUAUAUUUGUAAUUAGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 632 643 679 776 907 1305 1501 1874 2057 2089
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 7:99548136:- 7:99548125:- 7:99548089:- 7:99547992:- 7:99547861:- 7:99547463:- 7:99547267:- 7:99546894:- 7:99546711:- 7:99546679:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
Lny8GcCeVGc9
UKen6WEino9G
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
Lny8GcCeVGc9
UKen6WEino9G
Lny8GcCeVGc9
UKen6WEino9G
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq