Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000482692
Gene ID: ENSG00000146592
Gene Name: CREB5
Sequence (UNICHARACTER ENCODING) GUGGUCCCUUCACCCGGGCUCCGCUCUUGCCUUCUCCACACUUGUUUGAGGGAAGUCCGGCCCCGAGUGCUGGUAGЖCUGUGGAAUUCGGCUGUGUCCUGAGGCCACCCUAGAGACCCCGCGCCGCGUGAGUGCCGGAGCGCUCGGUGGCCGCCGCGCCGCGCGCCUGGAGGGAUGCUAACGUGGAGCCGGCGCCGAGUCCGCCCGGCGUGCGUGCGUGUGUGGGAGCGCGCGAGUCCCCUGACGCGGGGACCAGUUAUGAAUCGGGGGUGUGUGUUUGCCUCCAGAGЖCCUGGCAAGGUGCGGAGCCCUCCAGAAGUGCGGUCAAGCGGCAGCGGAGACGGCGAGCCAGGAACCUCCCCCCGCGUCCCCAGCUUCCCAGCGUGGCGGCGGAACCCCCGGAGAAAGUUUGCAAЖCUUCCAGCGGGCGCGGCGAGGЖCGCCGGGUCACCUAGGGGGCGGGUGGGCGCGCGCGCAGGGGGCUCGCUCUCCCCGGUGCGGAGCUGCAGCUGCCACCUCUCCCGCCGGGCUGCCGGCUGCAGCGGGUGGGCGCGCGCCCGGGGAGGGGAGGUCGCCCUCGGAGGGCGCUUGGCUUUCGCUCCAGGCGCUCCGGGCUGGAGAGCGGCGAGGCUCCGUCCGCUCCAGUCCACUCCPCCGGCCGCCUCCUGCCUCCGCUGCUUUCUUGCUGGCAUCGUUACCUCUUCCCGGCCGCUGCCCCAAAUGACAGCUCCGGCUCGAGCUUUGGCGGCGCCCAGGCAAUUCCCAAGACCUGGCGGCGGAGUCUCCCCCUGCGGCAGAUUCUCGGCAGAAUCACUUGAЖCUUUUCACGAAGUUCUUAGAGGGGCAAGAUGCGAAGGAAGGAACCAAGGAGAUGUUUUCUCUCAGCAGCUGCAPCCCGCUUCUUCUUUGCCAUAGAUUUAUUUUUAAGGGGCGUCUGGUAGAUAAAGCCCUAGЖCCUUGUCCACACUCUCACCCCCAPCCCCAACUUUCCCUGGЖCCGGUGCCGCCCCCACUUGAUGCUUGCUCAAGGCCGGGGЖCUGGAGCGGGCUACUUGUAUAUUUCGUUGUCAGUCUGCAGAAUGUGUUUGAUUUUUAUUUUUCCCPCCUUCUCUGACAUGUGUCAAGGAAUAAAGЖCUGGAUACAGGUCCAUUA
Sequence (SHORT NAMES ENCODING) GUGGUCCCUUCACCCGGGCUCCGCUCUUGCCUUCUCCACACUUGUUUGAGGGAAGUCCGGCCCCGAGUGCUGGUAGm6ACUGUGGAAUUCGGCUGUGUCCUGAGGCCACCCUAGAGACCCCGCGCCGCGUGAGUGCCGGAGCGCUCGGUGGCCGCCGCGCCGCGCGCCUGGAGGGAUGCUAACGUGGAGCCGGCGCCGAGUCCGCCCGGCGUGCGUGCGUGUGUGGGAGCGCGCGAGUCCCCUGACGCGGGGACCAGUUAUGAAUCGGGGGUGUGUGUUUGCCUCCAGAGm6ACCUGGCAAGGUGCGGAGCCCUCCAGAAGUGCGGUCAAGCGGCAGCGGAGACGGCGAGCCAGGAACCUCCCCCCGCGUCCCCAGCUUCCCAGCGUGGCGGCGGAACCCCCGGAGAAAGUUUGCAAm6ACUUCCAGCGGGCGCGGCGAGGm6ACGCCGGGUCACCUAGGGGGCGGGUGGGCGCGCGCGCAGGGGGCUCGCUCUCCCCGGUGCGGAGCUGCAGCUGCCACCUCUCCCGCCGGGCUGCCGGCUGCAGCGGGUGGGCGCGCGCCCGGGGAGGGGAGGUCGCCCUCGGAGGGCGCUUGGCUUUCGCUCCAGGCGCUCCGGGCUGGAGAGCGGCGAGGCUCCGUCCGCUCCAGUCCACUCCYCCGGCCGCCUCCUGCCUCCGCUGCUUUCUUGCUGGCAUCGUUACCUCUUCCCGGCCGCUGCCCCAAAUGACAGCUCCGGCUCGAGCUUUGGCGGCGCCCAGGCAAUUCCCAAGACCUGGCGGCGGAGUCUCCCCCUGCGGCAGAUUCUCGGCAGAAUCACUUGAm6ACUUUUCACGAAGUUCUUAGAGGGGCAAGAUGCGAAGGAAGGAACCAAGGAGAUGUUUUCUCUCAGCAGCUGCAYCCCGCUUCUUCUUUGCCAUAGAUUUAUUUUUAAGGGGCGUCUGGUAGAUAAAGCCCUAGm6ACCUUGUCCACACUCUCACCCCCAYCCCCAACUUUCCCUGGm6ACCGGUGCCGCCCCCACUUGAUGCUUGCUCAAGGCCGGGGm6ACUGGAGCGGGCUACUUGUAUAUUUCGUUGUCAGUCUGCAGAAUGUGUUUGAUUUUUAUUUUUCCCYCCUUCUCUGACAUGUGUCAAGGAAUAAAGm6ACUGGAUACAGGUCCAUUA
Sequence (MODOMICS CODE ENCODING) GUGGUCCCUUCACCCGGGCUCCGCUCUUGCCUUCUCCACACUUGUUUGAGGGAAGUCCGGCCCCGAGUGCUGGUAG2000000006ACUGUGGAAUUCGGCUGUGUCCUGAGGCCACCCUAGAGACCCCGCGCCGCGUGAGUGCCGGAGCGCUCGGUGGCCGCCGCGCCGCGCGCCUGGAGGGAUGCUAACGUGGAGCCGGCGCCGAGUCCGCCCGGCGUGCGUGCGUGUGUGGGAGCGCGCGAGUCCCCUGACGCGGGGACCAGUUAUGAAUCGGGGGUGUGUGUUUGCCUCCAGAG2000000006ACCUGGCAAGGUGCGGAGCCCUCCAGAAGUGCGGUCAAGCGGCAGCGGAGACGGCGAGCCAGGAACCUCCCCCCGCGUCCCCAGCUUCCCAGCGUGGCGGCGGAACCCCCGGAGAAAGUUUGCAA2000000006ACUUCCAGCGGGCGCGGCGAGG2000000006ACGCCGGGUCACCUAGGGGGCGGGUGGGCGCGCGCGCAGGGGGCUCGCUCUCCCCGGUGCGGAGCUGCAGCUGCCACCUCUCCCGCCGGGCUGCCGGCUGCAGCGGGUGGGCGCGCGCCCGGGGAGGGGAGGUCGCCCUCGGAGGGCGCUUGGCUUUCGCUCCAGGCGCUCCGGGCUGGAGAGCGGCGAGGCUCCGUCCGCUCCAGUCCACUCC2000000009UCCGGCCGCCUCCUGCCUCCGCUGCUUUCUUGCUGGCAUCGUUACCUCUUCCCGGCCGCUGCCCCAAAUGACAGCUCCGGCUCGAGCUUUGGCGGCGCCCAGGCAAUUCCCAAGACCUGGCGGCGGAGUCUCCCCCUGCGGCAGAUUCUCGGCAGAAUCACUUGA2000000006ACUUUUCACGAAGUUCUUAGAGGGGCAAGAUGCGAAGGAAGGAACCAAGGAGAUGUUUUCUCUCAGCAGCUGCA2000000009UCCCGCUUCUUCUUUGCCAUAGAUUUAUUUUUAAGGGGCGUCUGGUAGAUAAAGCCCUAG2000000006ACCUUGUCCACACUCUCACCCCCA2000000009UCCCCAACUUUCCCUGG2000000006ACCGGUGCCGCCCCCACUUGAUGCUUGCUCAAGGCCGGGG2000000006ACUGGAGCGGGCUACUUGUAUAUUUCGUUGUCAGUCUGCAGAAUGUGUUUGAUUUUUAUUUUUCCC2000000009UCCUUCUCUGACAUGUGUCAAGGAAUAAAG2000000006ACUGGAUACAGGUCCAUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 77 289 414 436 650 815 889 949 973 990 1030 1096 1126
Modification Positions m6A m6A m6A m6A Y m6A Y m6A Y m6A m6A Y m6A
Genomic Coordinates 7:28409686:+ 7:28409898:+ 7:28410023:+ 7:28410045:+ 7:28410259:+ 7:28410424:+ 7:28410498:+ 7:28410558:+ 7:28410582:+ 7:28410599:+ 7:28410639:+ 7:28410705:+ 7:28410735:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
BkoLW2CBToyL
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
gBgcfFQ5WN9C
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VyCX26p5UBRL
834aFpha8RvT
dA7YoLwHrzgR
JASnTTw2HeNE
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3TeAZFYFxgvp
Ap2q43bQLNek
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VyCX26p5UBRL
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8