Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000223122
Gene ID: ENSG00000106392
Gene Name: C1GALT1
Sequence (UNICHARACTER ENCODING) UACAGCUUUGAUUUUAUAACAUCCUGCUAAUUUUUGUUCUUACAGAAAUACACUUUCGGGAAAUGGCCUCUAAAUCCUGGCUGAAUUUUUUAACCUUCCUCUGUGGAUCAGCAAUAGGAUUUCUUUUAUGUUCUCAGCUAUUUAGUAUUUUGUUGGGAGAAAAGGUUGACACCCAGCCUAAUGUUCUUCAUAAUGAUCCUCAUGCAAGGCAUUCAGAUGAUAAUGGACAGAAUCAUCUAGAAGGACAAAUGAACUUCAAUGCAGAUUCUAGCCAACAUAAAGAUGAGAACACAGACAUUGCUGAAAACCUCUAUCAGAAAGUUAGAAUUCUUUGCUGGGUUAUGЖCCGGCCCUCAAAACCUAGAGAAAAAGGCCAAACACGUCAAAGCUACUUGGGCCCAGCGUUGUAACAAAGUGUUGUUUAUGAGUUCAGAAGAAAAUAAAGЖCUUCCCUGCUGUGGGЖCUGAAAACCAAAGAAGGCAGAGAUCAACUAUACUGGAAAACAAUUAAAGCUUUUCAGUAUGUUCAUGAЖCAUUAUUUAGAAGAUGCUGAUUGGUUUUUGAAAGCAGAUGAUGACACGUAUGUCAUACUAGЖCAAUUUGAGGUGGCUUCUUUCAAAAUACGACCCUGAAGAACCCAUUUACUUUGGGAGAAGAUUUAAGCCUUAUGUAAAGCAGGGCUACAUGAGUGGAGGAGCAGGAUAUGUACUAAGCAAAGAAGCCUUGAAAAGAUUUGUUGAUGCAUUUAAAACAGЖCAAGUGUACACAUAGUUCCUCCAUUGAAGЖCUUAGCACUGGGGAGAUGCAUGGAAAUUAUGAAUGUAGAAGCAGGAGAUUCCAGAGAUACCAUUGGAAAAGAAЖCUUUUCAUCCCUUUGUGCCAGAACACCAUUUAAUUAAAGGUUAUCUACCUAGAACGUUUUGGUACUGGAAUUACAACUAUUAUCCPCCUGUAGAGGGUCCUGGUUGCUGCUCUGAUCUUGCAGUUUCUUUUCACUAUGUUGAUUCUACAACCAUGUAUGAGUUAGAAUACCUCGUUUAUCAUCUUCGUCCAUAUGGUUAUUUAUACAGAUAUCAACCUACCUUACCUGAACGUAUACUAAAGGAAAUUAGUCAAGCAAACAAAAAUGAAGAUACAAAAGUGAAGUUAGGAAAUCCUUGAAAGAAAAUCAUGAAUGAACAAAGGUAAUAUGUCUAGCACUGCACUGAAAAAGGЖCUUCUGCAUUUCUGACAUAGAACACUGGAAUCCCAGUGAGGAAUUCUAAGUGAЖCAUUCCUUAUAGAAACCUUUCACAUGAAUGЖCUAUAAЖCUGAAGCUPUAAAUGAGCUGUGAAGUGUGUUAAAAUGUGUUUUGAUACAGUAAUAUAUAAAUAUGUCUAUAUAUAUGAGGAACUUGUGUUUUUUAAAUGGUGGCCAGGUAGAGGAACUAGAAAAGAGAUUUUGUUGCCUGUUUUCUGACCAUCUGUGUUAUUGUCACUGAGAAACUAAAAUAGUAAAUUUACUAAAACUACACUGCACCAUGUUAGUAAUAAACAGAUCUGCCUUAAAGAAAAGAAAAUUUUAGAAAGAAAUAUUGUUGCUCAGUGUUGUUAAUAUAGCUCAAGAAUUGAGUUUAUAUUUGCAGUAUGCUAUAAAUGAUACCCCCCUACCACACCCACACACACAGUUUUUGUCUAAUGAAAAUGUUGCUGUGAUUAUUUAUAAUUGGUAGUAUUUCUUCCAGAAGAAGCUAAAAUAAGACUGGCACUUACCCUGAAGUGCAUUAAUAAAACCACACUUUAAAAUUA
Sequence (SHORT NAMES ENCODING) UACAGCUUUGAUUUUAUAACAUCCUGCUAAUUUUUGUUCUUACAGAAAUACACUUUCGGGAAAUGGCCUCUAAAUCCUGGCUGAAUUUUUUAACCUUCCUCUGUGGAUCAGCAAUAGGAUUUCUUUUAUGUUCUCAGCUAUUUAGUAUUUUGUUGGGAGAAAAGGUUGACACCCAGCCUAAUGUUCUUCAUAAUGAUCCUCAUGCAAGGCAUUCAGAUGAUAAUGGACAGAAUCAUCUAGAAGGACAAAUGAACUUCAAUGCAGAUUCUAGCCAACAUAAAGAUGAGAACACAGACAUUGCUGAAAACCUCUAUCAGAAAGUUAGAAUUCUUUGCUGGGUUAUGm6ACCGGCCCUCAAAACCUAGAGAAAAAGGCCAAACACGUCAAAGCUACUUGGGCCCAGCGUUGUAACAAAGUGUUGUUUAUGAGUUCAGAAGAAAAUAAAGm6ACUUCCCUGCUGUGGGm6ACUGAAAACCAAAGAAGGCAGAGAUCAACUAUACUGGAAAACAAUUAAAGCUUUUCAGUAUGUUCAUGAm6ACAUUAUUUAGAAGAUGCUGAUUGGUUUUUGAAAGCAGAUGAUGACACGUAUGUCAUACUAGm6ACAAUUUGAGGUGGCUUCUUUCAAAAUACGACCCUGAAGAACCCAUUUACUUUGGGAGAAGAUUUAAGCCUUAUGUAAAGCAGGGCUACAUGAGUGGAGGAGCAGGAUAUGUACUAAGCAAAGAAGCCUUGAAAAGAUUUGUUGAUGCAUUUAAAACAGm6ACAAGUGUACACAUAGUUCCUCCAUUGAAGm6ACUUAGCACUGGGGAGAUGCAUGGAAAUUAUGAAUGUAGAAGCAGGAGAUUCCAGAGAUACCAUUGGAAAAGAAm6ACUUUUCAUCCCUUUGUGCCAGAACACCAUUUAAUUAAAGGUUAUCUACCUAGAACGUUUUGGUACUGGAAUUACAACUAUUAUCCYCCUGUAGAGGGUCCUGGUUGCUGCUCUGAUCUUGCAGUUUCUUUUCACUAUGUUGAUUCUACAACCAUGUAUGAGUUAGAAUACCUCGUUUAUCAUCUUCGUCCAUAUGGUUAUUUAUACAGAUAUCAACCUACCUUACCUGAACGUAUACUAAAGGAAAUUAGUCAAGCAAACAAAAAUGAAGAUACAAAAGUGAAGUUAGGAAAUCCUUGAAAGAAAAUCAUGAAUGAACAAAGGUAAUAUGUCUAGCACUGCACUGAAAAAGGm6ACUUCUGCAUUUCUGACAUAGAACACUGGAAUCCCAGUGAGGAAUUCUAAGUGAm6ACAUUCCUUAUAGAAACCUUUCACAUGAAUGm6ACUAUAAm6ACUGAAGCUYUAAAUGAGCUGUGAAGUGUGUUAAAAUGUGUUUUGAUACAGUAAUAUAUAAAUAUGUCUAUAUAUAUGAGGAACUUGUGUUUUUUAAAUGGUGGCCAGGUAGAGGAACUAGAAAAGAGAUUUUGUUGCCUGUUUUCUGACCAUCUGUGUUAUUGUCACUGAGAAACUAAAAUAGUAAAUUUACUAAAACUACACUGCACCAUGUUAGUAAUAAACAGAUCUGCCUUAAAGAAAAGAAAAUUUUAGAAAGAAAUAUUGUUGCUCAGUGUUGUUAAUAUAGCUCAAGAAUUGAGUUUAUAUUUGCAGUAUGCUAUAAAUGAUACCCCCCUACCACACCCACACACACAGUUUUUGUCUAAUGAAAAUGUUGCUGUGAUUAUUUAUAAUUGGUAGUAUUUCUUCCAGAAGAAGCUAAAAUAAGACUGGCACUUACCCUGAAGUGCAUUAAUAAAACCACACUUUAAAAUUA
Sequence (MODOMICS CODE ENCODING) UACAGCUUUGAUUUUAUAACAUCCUGCUAAUUUUUGUUCUUACAGAAAUACACUUUCGGGAAAUGGCCUCUAAAUCCUGGCUGAAUUUUUUAACCUUCCUCUGUGGAUCAGCAAUAGGAUUUCUUUUAUGUUCUCAGCUAUUUAGUAUUUUGUUGGGAGAAAAGGUUGACACCCAGCCUAAUGUUCUUCAUAAUGAUCCUCAUGCAAGGCAUUCAGAUGAUAAUGGACAGAAUCAUCUAGAAGGACAAAUGAACUUCAAUGCAGAUUCUAGCCAACAUAAAGAUGAGAACACAGACAUUGCUGAAAACCUCUAUCAGAAAGUUAGAAUUCUUUGCUGGGUUAUG2000000006ACCGGCCCUCAAAACCUAGAGAAAAAGGCCAAACACGUCAAAGCUACUUGGGCCCAGCGUUGUAACAAAGUGUUGUUUAUGAGUUCAGAAGAAAAUAAAG2000000006ACUUCCCUGCUGUGGG2000000006ACUGAAAACCAAAGAAGGCAGAGAUCAACUAUACUGGAAAACAAUUAAAGCUUUUCAGUAUGUUCAUGA2000000006ACAUUAUUUAGAAGAUGCUGAUUGGUUUUUGAAAGCAGAUGAUGACACGUAUGUCAUACUAG2000000006ACAAUUUGAGGUGGCUUCUUUCAAAAUACGACCCUGAAGAACCCAUUUACUUUGGGAGAAGAUUUAAGCCUUAUGUAAAGCAGGGCUACAUGAGUGGAGGAGCAGGAUAUGUACUAAGCAAAGAAGCCUUGAAAAGAUUUGUUGAUGCAUUUAAAACAG2000000006ACAAGUGUACACAUAGUUCCUCCAUUGAAG2000000006ACUUAGCACUGGGGAGAUGCAUGGAAAUUAUGAAUGUAGAAGCAGGAGAUUCCAGAGAUACCAUUGGAAAAGAA2000000006ACUUUUCAUCCCUUUGUGCCAGAACACCAUUUAAUUAAAGGUUAUCUACCUAGAACGUUUUGGUACUGGAAUUACAACUAUUAUCC2000000009UCCUGUAGAGGGUCCUGGUUGCUGCUCUGAUCUUGCAGUUUCUUUUCACUAUGUUGAUUCUACAACCAUGUAUGAGUUAGAAUACCUCGUUUAUCAUCUUCGUCCAUAUGGUUAUUUAUACAGAUAUCAACCUACCUUACCUGAACGUAUACUAAAGGAAAUUAGUCAAGCAAACAAAAAUGAAGAUACAAAAGUGAAGUUAGGAAAUCCUUGAAAGAAAAUCAUGAAUGAACAAAGGUAAUAUGUCUAGCACUGCACUGAAAAAGG2000000006ACUUCUGCAUUUCUGACAUAGAACACUGGAAUCCCAGUGAGGAAUUCUAAGUGA2000000006ACAUUCCUUAUAGAAACCUUUCACAUGAAUG2000000006ACUAUAA2000000006ACUGAAGCU2000000009UUAAAUGAGCUGUGAAGUGUGUUAAAAUGUGUUUUGAUACAGUAAUAUAUAAAUAUGUCUAUAUAUAUGAGGAACUUGUGUUUUUUAAAUGGUGGCCAGGUAGAGGAACUAGAAAAGAGAUUUUGUUGCCUGUUUUCUGACCAUCUGUGUUAUUGUCACUGAGAAACUAAAAUAGUAAAUUUACUAAAACUACACUGCACCAUGUUAGUAAUAAACAGAUCUGCCUUAAAGAAAAGAAAAUUUUAGAAAGAAAUAUUGUUGCUCAGUGUUGUUAAUAUAGCUCAAGAAUUGAGUUUAUAUUUGCAGUAUGCUAUAAAUGAUACCCCCCUACCACACCCACACACACAGUUUUUGUCUAAUGAAAAUGUUGCUGUGAUUAUUUAUAAUUGGUAGUAUUUCUUCCAGAAGAAGCUAAAAUAAGACUGGCACUUACCCUGAAGUGCAUUAAUAAAACCACACUUUAAAAUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 345 445 461 530 592 751 781 855 941 1208 1262 1293 1300 1309
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A Y m6A m6A m6A m6A Y
Genomic Coordinates 7:7238317:+ 7:7238417:+ 7:7238433:+ 7:7238502:+ 7:7238564:+ 7:7238723:+ 7:7238753:+ 7:7238827:+ 7:7238913:+ 7:7243781:+ 7:7243835:+ 7:7243866:+ 7:7243873:+ 7:7243882:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
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Lny8GcCeVGc9
bXBqJigD9oV3
f6YSioLdAWpr
5FhTyQVy2tKW
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
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VL7zkHvkfkoB
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WdHxkJGRmFxn
nfCHyrYzE6fB
Lny8GcCeVGc9
bXBqJigD9oV3
f6YSioLdAWpr
nfCHyrYzE6fB
BsCW7emuRX7M
KENzb7mwdBd9
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PF5iqBNSbHaa
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VL7zkHvkfkoB
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aJksAshEgQ8U
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
bXBqJigD9oV3
f6YSioLdAWpr
5aTkEfEpX8Xm
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
D6ncpa2PPWj3
Lny8GcCeVGc9
LZJKems7W2wi
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bXBqJigD9oV3
f6YSioLdAWpr
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
nfCHyrYzE6fB
Lny8GcCeVGc9
bXBqJigD9oV3
f6YSioLdAWpr
6UuHp6YApVKv
jNkxUQNx8GRd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
5FhTyQVy2tKW
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
nfCHyrYzE6fB
Lny8GcCeVGc9
bXBqJigD9oV3
f6YSioLdAWpr
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
6UuHp6YApVKv
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
bXBqJigD9oV3
f6YSioLdAWpr
6UuHp6YApVKv
jNkxUQNx8GRd
BsCW7emuRX7M
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr