Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000479907
Gene ID: ENSG00000170265
Gene Name: ZNF282
Sequence (UNICHARACTER ENCODING) UUCUCCCUGGCCGACCCGAGCGGGGAACAGCACUCCCAGGAUGCAGUUUGUGUCAACACGGCCGCAGCCUCAGCAGCUGGGCAUCCAGGGCCUGGGGCUGGACAGCGGGAGCUGGAGCUGGGCCCAGGCUCUGCCCCCGGAGGAGGUCUGCCACCAGGAGCCGGCGCUGCGCGGGGAAAUGGCCGAGGGAAUGCCGCCCAUGCAGGCUCAAGAAUGGGACAUGGACGCCCGGCGGCCAAUGCCUUUUCAGUUCCCACCCUUUCCAGAUAGGGCACCUGUCUUCCCCGACCGCAUGAUGCGAGAGCCCCAGUUGCCCACAGCAGAGAUCUCACUCUGGЖCUGUGGUGGCUGCCAUUCAGGCUGUGGAGAGGAAGGUGGAUGCCCAGGCCAGCCAGCUGCUGAACCUGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCUGGCCGACUGUGAAAAGACGGCCGUGGAAUUUGGGAACCACAUGGAGAGCAAGUGGGCCGUGCUGGGGACCCUGCUGCAGGAGUACGGGCUGCUGCAGAGGCGGCUGGAGAACUUGGAGAACUUGCUGCGCAACAGGAACUUCUGGGUCCUGCGGCUGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAGGUUCCAGUGACUUUUGUCGACAUUGCUGUGUACUUCUCCGAAGACGAGUGGAAGAACUUGGACGAAUGGCAGAAGGAGCUUUAUAACAACCUUGUUAAGGAGAACUACAAAACCCUCAUGUCCCUGGACGCGGAGGGCUCAGUCCCCAAGCCAGAUGCUCCAGUCCAGGCUGAGCCCAGGGAAGAACCUUGUGUGUGGGAGCAGCGCCACCCCGAAGAGAGAGAAAUCCCAAUGGAUCCCGAAGCAGGAGCAGAGCCCCUGGUGCCUGCGCAGGAUGCGUCCUCCCAGGUGAAGCGUGAGGACACCCUGUGUGUCCGGGGUCAGCGGGGCCUGGAGGAAAGAGCCAUCCCUACGGAAUCCAUUACCGACUCCCCAAUUUCUGCCCAGGACCUCUUGUCCCGGAUUAAACAGGAGGAGCAUCAGUGCGUGUGGGAUCAGCAGGAUUUGGCAGACAGAGAUAUUCCCACGGAUCCCAAUUCAGAGUCUCUCAUCUCAGCACAUGACAUUUUGUCAUGGAUCAAGCAGGAGGAGCAGCCAUACCCAUGGGGACCACGCGACUCAAUGGACGGAGAGCUUGGAUUAGACUCUGGCCCUAGUGACAGCCUGCUGAUGGUGAAGAACCCACCCCCGGCCCCGCCACAGCCCCAGCCCCAGCCCCAGCCACCGCAGCCGCAGCUGCAGUCGCAGCCCCAGCCCCAGAGCCUGCCCCCCAUCGCGGUGGCCGAGAACCCGGGCGGCCCCCCGAGCCGAGGGCUGCUGGЖCGACGGUUUCCAGCCACACCAAGGAGCGGCCCUACGAGUGCGCUGAGUGCGAGAAGAGCUUCAACUGCCACUCGGGCCUCAPCCGCCACCAGAUGACGCACCGCGGCGAGCGGCCCUACAAGUGCUCGGAGUGCGAGAAGACCUACAGCCGUAAGGAGCACCUGCAGAЖCCACCAGCGGCUGCACACGGGCGAGCGGCCUUUCCAAUGUGCACUGUGCGGCAAGAGCUUCAPCCGCAAGCAGAACCUGCUCAAGCACCAGCGCAPCCACACGGGCGAGCGCCCCUACACGUGCGGCGAGUGCGGCAAGAGCUUCCGCUACAAGGAGUCGCUCAAGGЖCCACCUGCGCGUGCACAGCGGCGGCCCGGGCCCCGGCGCCCCACGGCAGCUCCCGCCGCCUCCUGAGCGAGЖCUAGGGCUGGGCUGGGGGAG
Sequence (SHORT NAMES ENCODING) UUCUCCCUGGCCGACCCGAGCGGGGAACAGCACUCCCAGGAUGCAGUUUGUGUCAACACGGCCGCAGCCUCAGCAGCUGGGCAUCCAGGGCCUGGGGCUGGACAGCGGGAGCUGGAGCUGGGCCCAGGCUCUGCCCCCGGAGGAGGUCUGCCACCAGGAGCCGGCGCUGCGCGGGGAAAUGGCCGAGGGAAUGCCGCCCAUGCAGGCUCAAGAAUGGGACAUGGACGCCCGGCGGCCAAUGCCUUUUCAGUUCCCACCCUUUCCAGAUAGGGCACCUGUCUUCCCCGACCGCAUGAUGCGAGAGCCCCAGUUGCCCACAGCAGAGAUCUCACUCUGGm6ACUGUGGUGGCUGCCAUUCAGGCUGUGGAGAGGAAGGUGGAUGCCCAGGCCAGCCAGCUGCUGAACCUGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCUGGCCGACUGUGAAAAGACGGCCGUGGAAUUUGGGAACCACAUGGAGAGCAAGUGGGCCGUGCUGGGGACCCUGCUGCAGGAGUACGGGCUGCUGCAGAGGCGGCUGGAGAACUUGGAGAACUUGCUGCGCAACAGGAACUUCUGGGUCCUGCGGCUGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAGGUUCCAGUGACUUUUGUCGACAUUGCUGUGUACUUCUCCGAAGACGAGUGGAAGAACUUGGACGAAUGGCAGAAGGAGCUUUAUAACAACCUUGUUAAGGAGAACUACAAAACCCUCAUGUCCCUGGACGCGGAGGGCUCAGUCCCCAAGCCAGAUGCUCCAGUCCAGGCUGAGCCCAGGGAAGAACCUUGUGUGUGGGAGCAGCGCCACCCCGAAGAGAGAGAAAUCCCAAUGGAUCCCGAAGCAGGAGCAGAGCCCCUGGUGCCUGCGCAGGAUGCGUCCUCCCAGGUGAAGCGUGAGGACACCCUGUGUGUCCGGGGUCAGCGGGGCCUGGAGGAAAGAGCCAUCCCUACGGAAUCCAUUACCGACUCCCCAAUUUCUGCCCAGGACCUCUUGUCCCGGAUUAAACAGGAGGAGCAUCAGUGCGUGUGGGAUCAGCAGGAUUUGGCAGACAGAGAUAUUCCCACGGAUCCCAAUUCAGAGUCUCUCAUCUCAGCACAUGACAUUUUGUCAUGGAUCAAGCAGGAGGAGCAGCCAUACCCAUGGGGACCACGCGACUCAAUGGACGGAGAGCUUGGAUUAGACUCUGGCCCUAGUGACAGCCUGCUGAUGGUGAAGAACCCACCCCCGGCCCCGCCACAGCCCCAGCCCCAGCCCCAGCCACCGCAGCCGCAGCUGCAGUCGCAGCCCCAGCCCCAGAGCCUGCCCCCCAUCGCGGUGGCCGAGAACCCGGGCGGCCCCCCGAGCCGAGGGCUGCUGGm6ACGACGGUUUCCAGCCACACCAAGGAGCGGCCCUACGAGUGCGCUGAGUGCGAGAAGAGCUUCAACUGCCACUCGGGCCUCAYCCGCCACCAGAUGACGCACCGCGGCGAGCGGCCCUACAAGUGCUCGGAGUGCGAGAAGACCUACAGCCGUAAGGAGCACCUGCAGAm6ACCACCAGCGGCUGCACACGGGCGAGCGGCCUUUCCAAUGUGCACUGUGCGGCAAGAGCUUCAYCCGCAAGCAGAACCUGCUCAAGCACCAGCGCAYCCACACGGGCGAGCGCCCCUACACGUGCGGCGAGUGCGGCAAGAGCUUCCGCUACAAGGAGUCGCUCAAGGm6ACCACCUGCGCGUGCACAGCGGCGGCCCGGGCCCCGGCGCCCCACGGCAGCUCCCGCCGCCUCCUGAGCGAGm6ACUAGGGCUGGGCUGGGGGAG
Sequence (MODOMICS CODE ENCODING) UUCUCCCUGGCCGACCCGAGCGGGGAACAGCACUCCCAGGAUGCAGUUUGUGUCAACACGGCCGCAGCCUCAGCAGCUGGGCAUCCAGGGCCUGGGGCUGGACAGCGGGAGCUGGAGCUGGGCCCAGGCUCUGCCCCCGGAGGAGGUCUGCCACCAGGAGCCGGCGCUGCGCGGGGAAAUGGCCGAGGGAAUGCCGCCCAUGCAGGCUCAAGAAUGGGACAUGGACGCCCGGCGGCCAAUGCCUUUUCAGUUCCCACCCUUUCCAGAUAGGGCACCUGUCUUCCCCGACCGCAUGAUGCGAGAGCCCCAGUUGCCCACAGCAGAGAUCUCACUCUGG2000000006ACUGUGGUGGCUGCCAUUCAGGCUGUGGAGAGGAAGGUGGAUGCCCAGGCCAGCCAGCUGCUGAACCUGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCUGGCCGACUGUGAAAAGACGGCCGUGGAAUUUGGGAACCACAUGGAGAGCAAGUGGGCCGUGCUGGGGACCCUGCUGCAGGAGUACGGGCUGCUGCAGAGGCGGCUGGAGAACUUGGAGAACUUGCUGCGCAACAGGAACUUCUGGGUCCUGCGGCUGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAGGUUCCAGUGACUUUUGUCGACAUUGCUGUGUACUUCUCCGAAGACGAGUGGAAGAACUUGGACGAAUGGCAGAAGGAGCUUUAUAACAACCUUGUUAAGGAGAACUACAAAACCCUCAUGUCCCUGGACGCGGAGGGCUCAGUCCCCAAGCCAGAUGCUCCAGUCCAGGCUGAGCCCAGGGAAGAACCUUGUGUGUGGGAGCAGCGCCACCCCGAAGAGAGAGAAAUCCCAAUGGAUCCCGAAGCAGGAGCAGAGCCCCUGGUGCCUGCGCAGGAUGCGUCCUCCCAGGUGAAGCGUGAGGACACCCUGUGUGUCCGGGGUCAGCGGGGCCUGGAGGAAAGAGCCAUCCCUACGGAAUCCAUUACCGACUCCCCAAUUUCUGCCCAGGACCUCUUGUCCCGGAUUAAACAGGAGGAGCAUCAGUGCGUGUGGGAUCAGCAGGAUUUGGCAGACAGAGAUAUUCCCACGGAUCCCAAUUCAGAGUCUCUCAUCUCAGCACAUGACAUUUUGUCAUGGAUCAAGCAGGAGGAGCAGCCAUACCCAUGGGGACCACGCGACUCAAUGGACGGAGAGCUUGGAUUAGACUCUGGCCCUAGUGACAGCCUGCUGAUGGUGAAGAACCCACCCCCGGCCCCGCCACAGCCCCAGCCCCAGCCCCAGCCACCGCAGCCGCAGCUGCAGUCGCAGCCCCAGCCCCAGAGCCUGCCCCCCAUCGCGGUGGCCGAGAACCCGGGCGGCCCCCCGAGCCGAGGGCUGCUGG2000000006ACGACGGUUUCCAGCCACACCAAGGAGCGGCCCUACGAGUGCGCUGAGUGCGAGAAGAGCUUCAACUGCCACUCGGGCCUCA2000000009UCCGCCACCAGAUGACGCACCGCGGCGAGCGGCCCUACAAGUGCUCGGAGUGCGAGAAGACCUACAGCCGUAAGGAGCACCUGCAGA2000000006ACCACCAGCGGCUGCACACGGGCGAGCGGCCUUUCCAAUGUGCACUGUGCGGCAAGAGCUUCA2000000009UCCGCAAGCAGAACCUGCUCAAGCACCAGCGCA2000000009UCCACACGGGCGAGCGCCCCUACACGUGCGGCGAGUGCGGCAAGAGCUUCCGCUACAAGGAGUCGCUCAAGG2000000006ACCACCUGCGCGUGCACAGCGGCGGCCCGGGCCCCGGCGCCCCACGGCAGCUCCCGCCGCCUCCUGAGCGAG2000000006ACUAGGGCUGGGCUGGGGGAG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 338 1386 1468 1555 1618 1651 1723 1795
Modification Positions m6A m6A Y m6A Y Y m6A m6A
Genomic Coordinates 7:149198465:+ 7:149223977:+ 7:149224316:+ 7:149224403:+ 7:149224466:+ 7:149224499:+ 7:149224571:+ 7:149224643:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
KTLz8piFYdwC
Lny8GcCeVGc9
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
Yfn77uLS5tv8
Q36pf44ZRvxu
BtsJQJ3DteUq
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
S9vNeQQYrhac
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
BkoLW2CBToyL
nfCHyrYzE6fB
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
Yfn77uLS5tv8
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
834aFpha8RvT
dA7YoLwHrzgR
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
Yfn77uLS5tv8