General Data

RNA Type	pseudogene
Original Source	Sci-ModoM
Transcript ID:	ENST00000414990
Gene ID:	ENSG00000223459
Gene Name:	TCAF1P1
Sequence (UNICHARACTER ENCODING)	UUGUGAAGAUGACCUCUCCGACGACAGAGAAGAGCUUCUGCAUGGGAUUUCAGAGCUGGACAUCAGCAACUCGGAUUGUUUCCCAUCCCAGCUGCUAGUGCAUGGGGCUUUAGCCUUUCCUCUAGGGUUAGAUUCCUACCAUGGCUGUGUUAUAGCGGCUGCCCGCUAUGGCCGGGGCCGGGUGGUUGUGЖCUGGCCAUAAGGUAUUAUUCACUGUUGGUAAACUGGGCCCCUUUCUGCUCAAUGCUGUCCGCUGGCUGGAUGGGGGCCGCAGAGGCAAGAUUGUGGUGCAGACAGAGCUGAGAACCCUGAGUGGCCUCCUCGCAGUGGGGGGCAUAGACACCAGCAUCGAGCCCAAUCUGACCAGUGAUGCAAGUGUCUACUGCUUUGAACCCGUGAGUGAAGUGGGGGUCAAGGAЖCUGCAGGAGUUUGUAGCAGAGGGUGGCGGGCUAUUUGUUGGAGCCCAAGCCUGGUGGUGGGCCUUCAAGAACCCCGGAGUGUCCCCUUUGGCUCGAUUCCCAGGAAACCUCCUCCUCAACCCCUUUGGCAUCAGCAUUACAAGCCAAAGCCUCAAUCCAGGGCCCUUUCGUACUCCUAAAGCAGGGAUAAGGЖCCUAUCACUUCCGCUCCACCUUGGCCGAGUUCCAGGUUAUAAUGGGCAGGAAGAGAGGAAAUGUGGAAAAGGGCUGGUUGGCAAAGCUGGGACCAGAUGGUGCAGCUUUCCUGCAGAUUCCCGCAGAAGAGAUCCCUGCCUACAUGUCUGUGCAUCGACUCCUGAGGAAGCUGCUAAGUCGAUAUCGGCUUCCAGUAGCAACCCGAGAGAACCCUGUUAUCAAUGЖCUGCUGCAGAGGUGCUAUGCUUUCCCUGGCCACAGGGCUGGCCCACUCUGGAAGCGACCUCUCUCUGUUAGUCCCAGAAAUUGAAGAUAUGUACAGCAGCCCCUAUCUGCGCCCCUCAGAAUCUCCUAUCACCGUCGAGGUCAACUGCACCAAUCCAGGCACCAGAUAUUGCUGGAUGAGUACUGGGCUCUACAUACCUGGAAGGCAAAUUAUAGAAGUCUCACUGCCUGAAGCUGCUGCCUCUGCCGACCUGAAGAUACAGAUUGGCUGCCACACAGAUGACCUGACCAGGGCCAGCAAGCUUUUCCGAGGCCCACUCGUAAUUAACCGGUGCUGCUUGGACAAACCCACAAAAUCGAUCACGUGCCUCUGGGGUGGACUCCUCUAUAUAAUUGUGCCUCAGAACAGCAAACUGGGUUCUGUGCCUGUCACCGUGAAGGGGGCUGUGCAUGCUCCAUACUACAAGCUGGGGGAGACCACCCUGGAGGAGUGGAAGAGGCGUAUCCAGGAGAAUCCAGGGCCCUGGGGAGAGCUGGCCACGGACAACAUCAUUCUGACCGUGCCGACCGCAAAUCUUCGUACUCUGGAGAACCCUGAGCCGCUGCUCCGCCUCUGGGAUGAGGUGAUGCAGGCUGUGGCGCGACUGGGAGCUGAGCCCUUCCCUUUGCGCCUGCCUCAGAGGAUUGUUGCCGACGUGCAGAUCUCAGUGGGCUGGAUGCAUGCAGGGUACCCCAUCAUGUGCCAUCUGGAGUCAGUGCAGGAGCUCAUCAACGAGAAGCUCAUCAGAACCAAGGGGCUGUGGGGCCCCGUCCAUGAGCUGGGCCGCAACCAGCAGCGGCAGGAGUGGGAGUUCCCACCACACACCACCGAGGCCACCUGCAACCUGUGGUGUGUGUAUGUGCAUGAGACGGUCUUGGGCAUUCCUCGAAGCCGUGCCAAUAUUGCUCUGUGGCCCCCAGUUCGGGAGAAGAGAGUCAGAAUCUACCUGAGCAAGGGUCCCAAUGUGAAAAACUGGAAUGCAUGGACCGCACUGGAAACGUAUUUACAGAUGAAUGUACCAUCUUCUCACUAUGCCUUGGCCGUGCCUCAGAGCCCCCAUUAUGUAGGCAAUCCAAGAGUCCUCACUGACCUGGACAAGGAGCUCCAGGAAGCCUUUGGUUGGGAGCCAUUCAUCCGUCUCUUCACCGAGUACAGGAACCAGACCAACUUGCCCACAGAAAAUGUUGACAAAAUGAAUCUGUGGGUCAAGAUGUUCUCCCACCAAGUGCAGAAGAACCUGGCUCCGUUCUUUGAGGCCUGGGCCUGGCCCAUCCAGAAGGAAGUGGCUACCAGCCUGGCCUAUCUGCCUGAAUGGAAGGAAAAUAUUAUGAAAUUGUACCUCCUCACACAGAUGUAA
Sequence (SHORT NAMES ENCODING)	UUGUGAAGAUGACCUCUCCGACGACAGAGAAGAGCUUCUGCAUGGGAUUUCAGAGCUGGACAUCAGCAACUCGGAUUGUUUCCCAUCCCAGCUGCUAGUGCAUGGGGCUUUAGCCUUUCCUCUAGGGUUAGAUUCCUACCAUGGCUGUGUUAUAGCGGCUGCCCGCUAUGGCCGGGGCCGGGUGGUUGUGm6ACUGGCCAUAAGGUAUUAUUCACUGUUGGUAAACUGGGCCCCUUUCUGCUCAAUGCUGUCCGCUGGCUGGAUGGGGGCCGCAGAGGCAAGAUUGUGGUGCAGACAGAGCUGAGAACCCUGAGUGGCCUCCUCGCAGUGGGGGGCAUAGACACCAGCAUCGAGCCCAAUCUGACCAGUGAUGCAAGUGUCUACUGCUUUGAACCCGUGAGUGAAGUGGGGGUCAAGGAm6ACUGCAGGAGUUUGUAGCAGAGGGUGGCGGGCUAUUUGUUGGAGCCCAAGCCUGGUGGUGGGCCUUCAAGAACCCCGGAGUGUCCCCUUUGGCUCGAUUCCCAGGAAACCUCCUCCUCAACCCCUUUGGCAUCAGCAUUACAAGCCAAAGCCUCAAUCCAGGGCCCUUUCGUACUCCUAAAGCAGGGAUAAGGm6ACCUAUCACUUCCGCUCCACCUUGGCCGAGUUCCAGGUUAUAAUGGGCAGGAAGAGAGGAAAUGUGGAAAAGGGCUGGUUGGCAAAGCUGGGACCAGAUGGUGCAGCUUUCCUGCAGAUUCCCGCAGAAGAGAUCCCUGCCUACAUGUCUGUGCAUCGACUCCUGAGGAAGCUGCUAAGUCGAUAUCGGCUUCCAGUAGCAACCCGAGAGAACCCUGUUAUCAAUGm6ACUGCUGCAGAGGUGCUAUGCUUUCCCUGGCCACAGGGCUGGCCCACUCUGGAAGCGACCUCUCUCUGUUAGUCCCAGAAAUUGAAGAUAUGUACAGCAGCCCCUAUCUGCGCCCCUCAGAAUCUCCUAUCACCGUCGAGGUCAACUGCACCAAUCCAGGCACCAGAUAUUGCUGGAUGAGUACUGGGCUCUACAUACCUGGAAGGCAAAUUAUAGAAGUCUCACUGCCUGAAGCUGCUGCCUCUGCCGACCUGAAGAUACAGAUUGGCUGCCACACAGAUGACCUGACCAGGGCCAGCAAGCUUUUCCGAGGCCCACUCGUAAUUAACCGGUGCUGCUUGGACAAACCCACAAAAUCGAUCACGUGCCUCUGGGGUGGACUCCUCUAUAUAAUUGUGCCUCAGAACAGCAAACUGGGUUCUGUGCCUGUCACCGUGAAGGGGGCUGUGCAUGCUCCAUACUACAAGCUGGGGGAGACCACCCUGGAGGAGUGGAAGAGGCGUAUCCAGGAGAAUCCAGGGCCCUGGGGAGAGCUGGCCACGGACAACAUCAUUCUGACCGUGCCGACCGCAAAUCUUCGUACUCUGGAGAACCCUGAGCCGCUGCUCCGCCUCUGGGAUGAGGUGAUGCAGGCUGUGGCGCGACUGGGAGCUGAGCCCUUCCCUUUGCGCCUGCCUCAGAGGAUUGUUGCCGACGUGCAGAUCUCAGUGGGCUGGAUGCAUGCAGGGUACCCCAUCAUGUGCCAUCUGGAGUCAGUGCAGGAGCUCAUCAACGAGAAGCUCAUCAGAACCAAGGGGCUGUGGGGCCCCGUCCAUGAGCUGGGCCGCAACCAGCAGCGGCAGGAGUGGGAGUUCCCACCACACACCACCGAGGCCACCUGCAACCUGUGGUGUGUGUAUGUGCAUGAGACGGUCUUGGGCAUUCCUCGAAGCCGUGCCAAUAUUGCUCUGUGGCCCCCAGUUCGGGAGAAGAGAGUCAGAAUCUACCUGAGCAAGGGUCCCAAUGUGAAAAACUGGAAUGCAUGGACCGCACUGGAAACGUAUUUACAGAUGAAUGUACCAUCUUCUCACUAUGCCUUGGCCGUGCCUCAGAGCCCCCAUUAUGUAGGCAAUCCAAGAGUCCUCACUGACCUGGACAAGGAGCUCCAGGAAGCCUUUGGUUGGGAGCCAUUCAUCCGUCUCUUCACCGAGUACAGGAACCAGACCAACUUGCCCACAGAAAAUGUUGACAAAAUGAAUCUGUGGGUCAAGAUGUUCUCCCACCAAGUGCAGAAGAACCUGGCUCCGUUCUUUGAGGCCUGGGCCUGGCCCAUCCAGAAGGAAGUGGCUACCAGCCUGGCCUAUCUGCCUGAAUGGAAGGAAAAUAUUAUGAAAUUGUACCUCCUCACACAGAUGUAA
Sequence (MODOMICS CODE ENCODING)	UUGUGAAGAUGACCUCUCCGACGACAGAGAAGAGCUUCUGCAUGGGAUUUCAGAGCUGGACAUCAGCAACUCGGAUUGUUUCCCAUCCCAGCUGCUAGUGCAUGGGGCUUUAGCCUUUCCUCUAGGGUUAGAUUCCUACCAUGGCUGUGUUAUAGCGGCUGCCCGCUAUGGCCGGGGCCGGGUGGUUGUG2000000006ACUGGCCAUAAGGUAUUAUUCACUGUUGGUAAACUGGGCCCCUUUCUGCUCAAUGCUGUCCGCUGGCUGGAUGGGGGCCGCAGAGGCAAGAUUGUGGUGCAGACAGAGCUGAGAACCCUGAGUGGCCUCCUCGCAGUGGGGGGCAUAGACACCAGCAUCGAGCCCAAUCUGACCAGUGAUGCAAGUGUCUACUGCUUUGAACCCGUGAGUGAAGUGGGGGUCAAGGA2000000006ACUGCAGGAGUUUGUAGCAGAGGGUGGCGGGCUAUUUGUUGGAGCCCAAGCCUGGUGGUGGGCCUUCAAGAACCCCGGAGUGUCCCCUUUGGCUCGAUUCCCAGGAAACCUCCUCCUCAACCCCUUUGGCAUCAGCAUUACAAGCCAAAGCCUCAAUCCAGGGCCCUUUCGUACUCCUAAAGCAGGGAUAAGG2000000006ACCUAUCACUUCCGCUCCACCUUGGCCGAGUUCCAGGUUAUAAUGGGCAGGAAGAGAGGAAAUGUGGAAAAGGGCUGGUUGGCAAAGCUGGGACCAGAUGGUGCAGCUUUCCUGCAGAUUCCCGCAGAAGAGAUCCCUGCCUACAUGUCUGUGCAUCGACUCCUGAGGAAGCUGCUAAGUCGAUAUCGGCUUCCAGUAGCAACCCGAGAGAACCCUGUUAUCAAUG2000000006ACUGCUGCAGAGGUGCUAUGCUUUCCCUGGCCACAGGGCUGGCCCACUCUGGAAGCGACCUCUCUCUGUUAGUCCCAGAAAUUGAAGAUAUGUACAGCAGCCCCUAUCUGCGCCCCUCAGAAUCUCCUAUCACCGUCGAGGUCAACUGCACCAAUCCAGGCACCAGAUAUUGCUGGAUGAGUACUGGGCUCUACAUACCUGGAAGGCAAAUUAUAGAAGUCUCACUGCCUGAAGCUGCUGCCUCUGCCGACCUGAAGAUACAGAUUGGCUGCCACACAGAUGACCUGACCAGGGCCAGCAAGCUUUUCCGAGGCCCACUCGUAAUUAACCGGUGCUGCUUGGACAAACCCACAAAAUCGAUCACGUGCCUCUGGGGUGGACUCCUCUAUAUAAUUGUGCCUCAGAACAGCAAACUGGGUUCUGUGCCUGUCACCGUGAAGGGGGCUGUGCAUGCUCCAUACUACAAGCUGGGGGAGACCACCCUGGAGGAGUGGAAGAGGCGUAUCCAGGAGAAUCCAGGGCCCUGGGGAGAGCUGGCCACGGACAACAUCAUUCUGACCGUGCCGACCGCAAAUCUUCGUACUCUGGAGAACCCUGAGCCGCUGCUCCGCCUCUGGGAUGAGGUGAUGCAGGCUGUGGCGCGACUGGGAGCUGAGCCCUUCCCUUUGCGCCUGCCUCAGAGGAUUGUUGCCGACGUGCAGAUCUCAGUGGGCUGGAUGCAUGCAGGGUACCCCAUCAUGUGCCAUCUGGAGUCAGUGCAGGAGCUCAUCAACGAGAAGCUCAUCAGAACCAAGGGGCUGUGGGGCCCCGUCCAUGAGCUGGGCCGCAACCAGCAGCGGCAGGAGUGGGAGUUCCCACCACACACCACCGAGGCCACCUGCAACCUGUGGUGUGUGUAUGUGCAUGAGACGGUCUUGGGCAUUCCUCGAAGCCGUGCCAAUAUUGCUCUGUGGCCCCCAGUUCGGGAGAAGAGAGUCAGAAUCUACCUGAGCAAGGGUCCCAAUGUGAAAAACUGGAAUGCAUGGACCGCACUGGAAACGUAUUUACAGAUGAAUGUACCAUCUUCUCACUAUGCCUUGGCCGUGCCUCAGAGCCCCCAUUAUGUAGGCAAUCCAAGAGUCCUCACUGACCUGGACAAGGAGCUCCAGGAAGCCUUUGGUUGGGAGCCAUUCAUCCGUCUCUUCACCGAGUACAGGAACCAGACCAACUUGCCCACAGAAAAUGUUGACAAAAUGAAUCUGUGGGUCAAGAUGUUCUCCCACCAAGUGCAGAAGAACCUGGCUCCGUUCUUUGAGGCCUGGGCCUGGCCCAUCCAGAAGGAAGUGGCUACCAGCCUGGCCUAUCUGCCUGAAUGGAAGGAAAAUAUUAUGAAAUUGUACCUCCUCACACAGAUGUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	191	418	611	837
Modification Positions	m6A	m6A	m6A	m6A
Genomic Coordinates	7:143598229:+	7:143598456:+	7:143598649:+	7:143598875:+
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se	5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB