Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000409701
Gene ID: ENSG00000115526
Gene Name: CHST10
Sequence (UNICHARACTER ENCODING) AAGAAGGAGCAUGUGCAGCUUCGGUGCGAGGGGAGUCAGGGGUGGGAAUGCACGUUCCCUGCCUGAGGGGCCCCGGGGUGCCCUGAGCCUCUGAUCUUCGCUGUCAGGAGGCCUGUCCGAAGUUGGAGGUUGAGGCAUGCAGUUCUGCACUUCUGGCUGGGAAGUGACAAGAGGAACCAAGAACCUCAGUUCAGGGGAAACACAGCAAGGAAAUGUGAGCCCCAGGCUGCAGAAGGAAGAGUCAGUGAAUGGCUGCGGUGUGACAACAUGCACCACCAGUGGCUUCUGCUGGCCGCAUGCUUUUGGGUGAUUUUCAUGUUCAUGGUGGCUAGCAAGUUCAUCACGUUGACCUUUAAAGACCCAGAUGUGUACAGUGCCAAACAGGAGUUUCUGUUCCUGACAACCAUGCCGGAAGUGAGGAAGUUGCCAGAAGAGAAGCACAUUCCUGAGGAACUGAAGCCAACUGGGAAGGAGCUUCCAGACAGCCAGCUCGUUCAGCCCCUGGUCUACAUGGAGCGCCUGGAACUCAUCAGAAACGUCUGCAGGGAUGAUGCCCUGAAGAAUCUCUCGCACACUCCUGUCUCCAAGUUUGUCCUGGACCGAAUAUUUGUCUGUGACAAGCACAAGAUUCUUUUCUGCCAGACUCCCAAAGUGGGCAACACCCAGUGGAAGAAAGUGCUGAUUGUUCUAAAUGGAGCAUUUUCUUCCAUUGAGGAGAUCCCCGAAAACGUGGUGCACGACCACGAGAAGAACGGCCUUCCUCGGCUCUCUUCCUUCAGUGAUGCAGAAAUUCAGAAGCGAUUGAAAACAUACUUCAAGUUUUUUAUUGUAAGAGAUCCCUUCGAAAGЖCUUAUUUCUGCAUUUAAGGAUAAAUUUGUUCACAAUCCCCGGUUUGAGCCUUGGUACAGGCAUGAGAUUGCUCCUGGCAUCAUCAGAAAAUACAGGAGGAACCGGACAGAGACCCGGGGGAUCCAGUUUGAAGAUUUCGUGCGCUACCUCGGCGAUCCGAACCACAGAUGGCUAGACCUUCAGUUUGGGGACCACAUCAUUCACUGGGUGACGUAUGUAGAGCUCUGUGCUCCCUGUGAGAUAAUGUACAGUGUGAUUGGЖCACCACGAGACCCUGGAGGЖCGAUGCCCCAUACAUCUUAAAAGAGGCUGGCAUUGACCACCUGGUGUCAUACCCGACUAUCCCUCCGGGCAUUACCGUGUAUAACAGAACCAAGGUGGAGCACUAUUUCCUGGGCAUCAGCAAACGAGACAUCCGACGCCUGUAUGCCCGUUUCGAAGGGGЖCUPUAAGCUCUUUGGGUACCAGAAACCAGЖCUUUUUGCUAAACUAA
Sequence (SHORT NAMES ENCODING) AAGAAGGAGCAUGUGCAGCUUCGGUGCGAGGGGAGUCAGGGGUGGGAAUGCACGUUCCCUGCCUGAGGGGCCCCGGGGUGCCCUGAGCCUCUGAUCUUCGCUGUCAGGAGGCCUGUCCGAAGUUGGAGGUUGAGGCAUGCAGUUCUGCACUUCUGGCUGGGAAGUGACAAGAGGAACCAAGAACCUCAGUUCAGGGGAAACACAGCAAGGAAAUGUGAGCCCCAGGCUGCAGAAGGAAGAGUCAGUGAAUGGCUGCGGUGUGACAACAUGCACCACCAGUGGCUUCUGCUGGCCGCAUGCUUUUGGGUGAUUUUCAUGUUCAUGGUGGCUAGCAAGUUCAUCACGUUGACCUUUAAAGACCCAGAUGUGUACAGUGCCAAACAGGAGUUUCUGUUCCUGACAACCAUGCCGGAAGUGAGGAAGUUGCCAGAAGAGAAGCACAUUCCUGAGGAACUGAAGCCAACUGGGAAGGAGCUUCCAGACAGCCAGCUCGUUCAGCCCCUGGUCUACAUGGAGCGCCUGGAACUCAUCAGAAACGUCUGCAGGGAUGAUGCCCUGAAGAAUCUCUCGCACACUCCUGUCUCCAAGUUUGUCCUGGACCGAAUAUUUGUCUGUGACAAGCACAAGAUUCUUUUCUGCCAGACUCCCAAAGUGGGCAACACCCAGUGGAAGAAAGUGCUGAUUGUUCUAAAUGGAGCAUUUUCUUCCAUUGAGGAGAUCCCCGAAAACGUGGUGCACGACCACGAGAAGAACGGCCUUCCUCGGCUCUCUUCCUUCAGUGAUGCAGAAAUUCAGAAGCGAUUGAAAACAUACUUCAAGUUUUUUAUUGUAAGAGAUCCCUUCGAAAGm6ACUUAUUUCUGCAUUUAAGGAUAAAUUUGUUCACAAUCCCCGGUUUGAGCCUUGGUACAGGCAUGAGAUUGCUCCUGGCAUCAUCAGAAAAUACAGGAGGAACCGGACAGAGACCCGGGGGAUCCAGUUUGAAGAUUUCGUGCGCUACCUCGGCGAUCCGAACCACAGAUGGCUAGACCUUCAGUUUGGGGACCACAUCAUUCACUGGGUGACGUAUGUAGAGCUCUGUGCUCCCUGUGAGAUAAUGUACAGUGUGAUUGGm6ACACCACGAGACCCUGGAGGm6ACGAUGCCCCAUACAUCUUAAAAGAGGCUGGCAUUGACCACCUGGUGUCAUACCCGACUAUCCCUCCGGGCAUUACCGUGUAUAACAGAACCAAGGUGGAGCACUAUUUCCUGGGCAUCAGCAAACGAGACAUCCGACGCCUGUAUGCCCGUUUCGAAGGGGm6ACUYUAAGCUCUUUGGGUACCAGAAACCAGm6ACUUUUUGCUAAACUAA
Sequence (MODOMICS CODE ENCODING) AAGAAGGAGCAUGUGCAGCUUCGGUGCGAGGGGAGUCAGGGGUGGGAAUGCACGUUCCCUGCCUGAGGGGCCCCGGGGUGCCCUGAGCCUCUGAUCUUCGCUGUCAGGAGGCCUGUCCGAAGUUGGAGGUUGAGGCAUGCAGUUCUGCACUUCUGGCUGGGAAGUGACAAGAGGAACCAAGAACCUCAGUUCAGGGGAAACACAGCAAGGAAAUGUGAGCCCCAGGCUGCAGAAGGAAGAGUCAGUGAAUGGCUGCGGUGUGACAACAUGCACCACCAGUGGCUUCUGCUGGCCGCAUGCUUUUGGGUGAUUUUCAUGUUCAUGGUGGCUAGCAAGUUCAUCACGUUGACCUUUAAAGACCCAGAUGUGUACAGUGCCAAACAGGAGUUUCUGUUCCUGACAACCAUGCCGGAAGUGAGGAAGUUGCCAGAAGAGAAGCACAUUCCUGAGGAACUGAAGCCAACUGGGAAGGAGCUUCCAGACAGCCAGCUCGUUCAGCCCCUGGUCUACAUGGAGCGCCUGGAACUCAUCAGAAACGUCUGCAGGGAUGAUGCCCUGAAGAAUCUCUCGCACACUCCUGUCUCCAAGUUUGUCCUGGACCGAAUAUUUGUCUGUGACAAGCACAAGAUUCUUUUCUGCCAGACUCCCAAAGUGGGCAACACCCAGUGGAAGAAAGUGCUGAUUGUUCUAAAUGGAGCAUUUUCUUCCAUUGAGGAGAUCCCCGAAAACGUGGUGCACGACCACGAGAAGAACGGCCUUCCUCGGCUCUCUUCCUUCAGUGAUGCAGAAAUUCAGAAGCGAUUGAAAACAUACUUCAAGUUUUUUAUUGUAAGAGAUCCCUUCGAAAG2000000006ACUUAUUUCUGCAUUUAAGGAUAAAUUUGUUCACAAUCCCCGGUUUGAGCCUUGGUACAGGCAUGAGAUUGCUCCUGGCAUCAUCAGAAAAUACAGGAGGAACCGGACAGAGACCCGGGGGAUCCAGUUUGAAGAUUUCGUGCGCUACCUCGGCGAUCCGAACCACAGAUGGCUAGACCUUCAGUUUGGGGACCACAUCAUUCACUGGGUGACGUAUGUAGAGCUCUGUGCUCCCUGUGAGAUAAUGUACAGUGUGAUUGG2000000006ACACCACGAGACCCUGGAGG2000000006ACGAUGCCCCAUACAUCUUAAAAGAGGCUGGCAUUGACCACCUGGUGUCAUACCCGACUAUCCCUCCGGGCAUUACCGUGUAUAACAGAACCAAGGUGGAGCACUAUUUCCUGGGCAUCAGCAAACGAGACAUCCGACGCCUGUAUGCCCGUUUCGAAGGGG2000000006ACU2000000009UUAAGCUCUUUGGGUACCAGAAACCAG2000000006ACUUUUUGCUAAACUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 849 1110 1130 1292 1295 1322
Modification Positions m6A m6A m6A m6A Y m6A
Genomic Coordinates 2:100393734:- 2:100393473:- 2:100393453:- 2:100393291:- 2:100393288:- 2:100393261:-
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
VyCX26p5UBRL
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
BtsJQJ3DteUq
Yfn77uLS5tv8