Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000357186
Gene ID: ENSG00000115204
Gene Name: MPV17
Sequence (UNICHARACTER ENCODING) ACAGUGACUAUGAUACUGCCUCCUAAGCAAGGACACACCCCAGUGAUGAGAAAUAGGCAAACCAUGGUCUUGAAAUGCCUAGGAGUAUAGGCUGGGGUUUGGAGGGAAAUAGUUGGAUGACCUCAGGAAAUAGAAAAAAACAGGCAGCUGCUUUUUGGAGAGAGUGGAGAUGAGAUCAGUGCCUACCUGGAACAAAACCCUCUGGCAUUCUAGACUGGCUGAAUAUGUAGUGUAGGGACUUUAUCAUCUGUCAGAAAAUCUCCUUUAAGAAGAAGCGAUCAAGAAGUUUAGUCCUGGCCAGGUGUGGUGGCUCACGCCUGUAAUCCCAACACUUUGGGAGGCCAAGGCAGGCGGAUUACUUGAGGUCAGAAGUUCAAGACCAGCCUGGCCAAUGUAUGGUGAAACCCCGUCUCUACCAAAAAUGUAAAAAAUUAGCCAGGUGUGAUGGCACACACCUGCAAUCCCAGCUACUCAGGAGGCUGAGGCAGAAGAAUCAUUUGAACCUGGGAUGCAGAGGUUGCAGUGAGCCGAGAUCCUGCCACUGCACUCCAGCCUGGGUGACGGAGCGAGACUCCGUCUCAAAAAGAGUUCAGCCCCUAUCCUGUACAGAUGAGAAAAUAGACCUGGAGGAAACCCAAGUCUAUCAACAGCAGAGACCACAACCCAUGUCAGUGCAAAGAAGCCAAGUGUUGCACUACCCUAUUGGGAUCCAGCUCACAUUGAGCCAGUUUUGUUUUUUGAGCUGUUACGCAAGUGCCUUCUGUCGAAGAGAAGCUUUACUCAAUUCUACAGGGCAGCCCCCUUCCUAUUUUCAGUGGUAGAAAAGAUGAGACCUGGGGAUCCACACUUGAGGCUGUAGAUUGGUGCUGGCAGCCCUGCUUCUGCAACUGAGUCUCAGCCCUAGUCUUGACCUUGUUCUUUUUCUCUAACAAGCCUUUUCUCUUUCUAACCCUCCCUCCCAAUAUACCCACUUCAUACUAUCCAUUGUUCAUACACUUCUCUACCUUUAUUCCUCUUCUCAUAUUCCUCCCUUCGCCAGAGUGUCUUUUUCCACCAUCUUCACCUGAGUUCAAUUCAUCCUUCAAGGUCCCGGCUCAAAUUCCACCUUCACCAAAGAGCUUCCCAGUUUUCUCCAGUAAAAAAUAGUUUCCCUCCCUUGUGUUCCCAAGGGGGAAGGGAGGAAAAAGGAUAAACAAGCAUUAAGCACUUGAUCCAUUUUAGGCACUUCGCAUGUGUCACUUGUAUGAGGGCCCUGUGGUAGGAGGCUGGUACAAGGUUUUGGAUCGGUUCAUCCCUGGCACCACCAAAGUGGAUGCACUGAAGAAGAUGUUGUUGGAUCAGGGGGGCUUUGCCCCGUGUUUUCUAGGCUGCUUUCUCCCACUGGUAGGGGCACUUAAUGGACUGUCAGCCCAGGACAACUGGGCCAAЖCUACЖGCGGGAUUAUCCUGAUGCCCUUAUCACCAACUACUAUCUAUGGCCUGCUGUGCAGUUAGCCAACUUCUACCUGGUCCCCCUUCAUUACAGGUUGGCCGUUGUCCAAUGUGUUGCUGUUAUCUGGAACUCCUACCUGUCCUGGAAGGCACAUCGGCUCUAAGCCUGCCUCACUCCAUCGUUUCCACCUUGCAGUGAUGCAGCUUGACCCUGGAACGGUCAGACAACCUCCUCAAAGUGGGCAUACCAGUUUCCACGGGGUUGGGUUGCCGGUCAGAGCUUAAGAGGЖCUAGCACCCUGCAAUGCCCCUCUUCACUCUAAAAUGUACACUGЖCUGCUPUAGAGCCCUUGAUAAUAGUCUUAUUCCCACCACAUACUAGGCACUCCAUAAAUAUCUGUUGAACCUUCAUGACCUUAUCAACUPUACACCCAUAUCCCAGCAAAUGCCACUCAPCCCCACUCUUCAUAGACACAUUUGUUACUCUAACCCUGCCUAGGCUUCUUGUAGCUCCAGCUCUPUAGAGACUCCCGGAACCCUPUAUAUGGUGCCUCAGUAAAUAUGUUAUUAAAUAUGUAAUCCGG
Sequence (SHORT NAMES ENCODING) ACAGUGACUAUGAUACUGCCUCCUAAGCAAGGACACACCCCAGUGAUGAGAAAUAGGCAAACCAUGGUCUUGAAAUGCCUAGGAGUAUAGGCUGGGGUUUGGAGGGAAAUAGUUGGAUGACCUCAGGAAAUAGAAAAAAACAGGCAGCUGCUUUUUGGAGAGAGUGGAGAUGAGAUCAGUGCCUACCUGGAACAAAACCCUCUGGCAUUCUAGACUGGCUGAAUAUGUAGUGUAGGGACUUUAUCAUCUGUCAGAAAAUCUCCUUUAAGAAGAAGCGAUCAAGAAGUUUAGUCCUGGCCAGGUGUGGUGGCUCACGCCUGUAAUCCCAACACUUUGGGAGGCCAAGGCAGGCGGAUUACUUGAGGUCAGAAGUUCAAGACCAGCCUGGCCAAUGUAUGGUGAAACCCCGUCUCUACCAAAAAUGUAAAAAAUUAGCCAGGUGUGAUGGCACACACCUGCAAUCCCAGCUACUCAGGAGGCUGAGGCAGAAGAAUCAUUUGAACCUGGGAUGCAGAGGUUGCAGUGAGCCGAGAUCCUGCCACUGCACUCCAGCCUGGGUGACGGAGCGAGACUCCGUCUCAAAAAGAGUUCAGCCCCUAUCCUGUACAGAUGAGAAAAUAGACCUGGAGGAAACCCAAGUCUAUCAACAGCAGAGACCACAACCCAUGUCAGUGCAAAGAAGCCAAGUGUUGCACUACCCUAUUGGGAUCCAGCUCACAUUGAGCCAGUUUUGUUUUUUGAGCUGUUACGCAAGUGCCUUCUGUCGAAGAGAAGCUUUACUCAAUUCUACAGGGCAGCCCCCUUCCUAUUUUCAGUGGUAGAAAAGAUGAGACCUGGGGAUCCACACUUGAGGCUGUAGAUUGGUGCUGGCAGCCCUGCUUCUGCAACUGAGUCUCAGCCCUAGUCUUGACCUUGUUCUUUUUCUCUAACAAGCCUUUUCUCUUUCUAACCCUCCCUCCCAAUAUACCCACUUCAUACUAUCCAUUGUUCAUACACUUCUCUACCUUUAUUCCUCUUCUCAUAUUCCUCCCUUCGCCAGAGUGUCUUUUUCCACCAUCUUCACCUGAGUUCAAUUCAUCCUUCAAGGUCCCGGCUCAAAUUCCACCUUCACCAAAGAGCUUCCCAGUUUUCUCCAGUAAAAAAUAGUUUCCCUCCCUUGUGUUCCCAAGGGGGAAGGGAGGAAAAAGGAUAAACAAGCAUUAAGCACUUGAUCCAUUUUAGGCACUUCGCAUGUGUCACUUGUAUGAGGGCCCUGUGGUAGGAGGCUGGUACAAGGUUUUGGAUCGGUUCAUCCCUGGCACCACCAAAGUGGAUGCACUGAAGAAGAUGUUGUUGGAUCAGGGGGGCUUUGCCCCGUGUUUUCUAGGCUGCUUUCUCCCACUGGUAGGGGCACUUAAUGGACUGUCAGCCCAGGACAACUGGGCCAAm6ACUACm6AGCGGGAUUAUCCUGAUGCCCUUAUCACCAACUACUAUCUAUGGCCUGCUGUGCAGUUAGCCAACUUCUACCUGGUCCCCCUUCAUUACAGGUUGGCCGUUGUCCAAUGUGUUGCUGUUAUCUGGAACUCCUACCUGUCCUGGAAGGCACAUCGGCUCUAAGCCUGCCUCACUCCAUCGUUUCCACCUUGCAGUGAUGCAGCUUGACCCUGGAACGGUCAGACAACCUCCUCAAAGUGGGCAUACCAGUUUCCACGGGGUUGGGUUGCCGGUCAGAGCUUAAGAGGm6ACUAGCACCCUGCAAUGCCCCUCUUCACUCUAAAAUGUACACUGm6ACUGCUYUAGAGCCCUUGAUAAUAGUCUUAUUCCCACCACAUACUAGGCACUCCAUAAAUAUCUGUUGAACCUUCAUGACCUUAUCAACUYUACACCCAUAUCCCAGCAAAUGCCACUCAYCCCCACUCUUCAUAGACACAUUUGUUACUCUAACCCUGCCUAGGCUUCUUGUAGCUCCAGCUCUYUAGAGACUCCCGGAACCCUYUAUAUGGUGCCUCAGUAAAUAUGUUAUUAAAUAUGUAAUCCGG
Sequence (MODOMICS CODE ENCODING) ACAGUGACUAUGAUACUGCCUCCUAAGCAAGGACACACCCCAGUGAUGAGAAAUAGGCAAACCAUGGUCUUGAAAUGCCUAGGAGUAUAGGCUGGGGUUUGGAGGGAAAUAGUUGGAUGACCUCAGGAAAUAGAAAAAAACAGGCAGCUGCUUUUUGGAGAGAGUGGAGAUGAGAUCAGUGCCUACCUGGAACAAAACCCUCUGGCAUUCUAGACUGGCUGAAUAUGUAGUGUAGGGACUUUAUCAUCUGUCAGAAAAUCUCCUUUAAGAAGAAGCGAUCAAGAAGUUUAGUCCUGGCCAGGUGUGGUGGCUCACGCCUGUAAUCCCAACACUUUGGGAGGCCAAGGCAGGCGGAUUACUUGAGGUCAGAAGUUCAAGACCAGCCUGGCCAAUGUAUGGUGAAACCCCGUCUCUACCAAAAAUGUAAAAAAUUAGCCAGGUGUGAUGGCACACACCUGCAAUCCCAGCUACUCAGGAGGCUGAGGCAGAAGAAUCAUUUGAACCUGGGAUGCAGAGGUUGCAGUGAGCCGAGAUCCUGCCACUGCACUCCAGCCUGGGUGACGGAGCGAGACUCCGUCUCAAAAAGAGUUCAGCCCCUAUCCUGUACAGAUGAGAAAAUAGACCUGGAGGAAACCCAAGUCUAUCAACAGCAGAGACCACAACCCAUGUCAGUGCAAAGAAGCCAAGUGUUGCACUACCCUAUUGGGAUCCAGCUCACAUUGAGCCAGUUUUGUUUUUUGAGCUGUUACGCAAGUGCCUUCUGUCGAAGAGAAGCUUUACUCAAUUCUACAGGGCAGCCCCCUUCCUAUUUUCAGUGGUAGAAAAGAUGAGACCUGGGGAUCCACACUUGAGGCUGUAGAUUGGUGCUGGCAGCCCUGCUUCUGCAACUGAGUCUCAGCCCUAGUCUUGACCUUGUUCUUUUUCUCUAACAAGCCUUUUCUCUUUCUAACCCUCCCUCCCAAUAUACCCACUUCAUACUAUCCAUUGUUCAUACACUUCUCUACCUUUAUUCCUCUUCUCAUAUUCCUCCCUUCGCCAGAGUGUCUUUUUCCACCAUCUUCACCUGAGUUCAAUUCAUCCUUCAAGGUCCCGGCUCAAAUUCCACCUUCACCAAAGAGCUUCCCAGUUUUCUCCAGUAAAAAAUAGUUUCCCUCCCUUGUGUUCCCAAGGGGGAAGGGAGGAAAAAGGAUAAACAAGCAUUAAGCACUUGAUCCAUUUUAGGCACUUCGCAUGUGUCACUUGUAUGAGGGCCCUGUGGUAGGAGGCUGGUACAAGGUUUUGGAUCGGUUCAUCCCUGGCACCACCAAAGUGGAUGCACUGAAGAAGAUGUUGUUGGAUCAGGGGGGCUUUGCCCCGUGUUUUCUAGGCUGCUUUCUCCCACUGGUAGGGGCACUUAAUGGACUGUCAGCCCAGGACAACUGGGCCAA2000000006ACUAC2000000006AGCGGGAUUAUCCUGAUGCCCUUAUCACCAACUACUAUCUAUGGCCUGCUGUGCAGUUAGCCAACUUCUACCUGGUCCCCCUUCAUUACAGGUUGGCCGUUGUCCAAUGUGUUGCUGUUAUCUGGAACUCCUACCUGUCCUGGAAGGCACAUCGGCUCUAAGCCUGCCUCACUCCAUCGUUUCCACCUUGCAGUGAUGCAGCUUGACCCUGGAACGGUCAGACAACCUCCUCAAAGUGGGCAUACCAGUUUCCACGGGGUUGGGUUGCCGGUCAGAGCUUAAGAGG2000000006ACUAGCACCCUGCAAUGCCCCUCUUCACUCUAAAAUGUACACUG2000000006ACUGCU2000000009UUAGAGCCCUUGAUAAUAGUCUUAUUCCCACCACAUACUAGGCACUCCAUAAAUAUCUGUUGAACCUUCAUGACCUUAUCAACU2000000009UUACACCCAUAUCCCAGCAAAUGCCACUCA2000000009UCCCCACUCUUCAUAGACACAUUUGUUACUCUAACCCUGCCUAGGCUUCUUGUAGCUCCAGCUCU2000000009UUAGAGACUCCCGGAACCCU2000000009UUAUAUGGUGCCUCAGUAAAUAUGUUAUUAAAUAUGUAAUCCGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1428 1433 1719 1763 1769 1853 1883 1948 1968
Modification Positions m6A m6A m6A m6A Y Y Y Y Y
Genomic Coordinates 2:27312503:- 2:27312498:- 2:27309786:- 2:27309742:- 2:27309736:- 2:27309652:- 2:27309622:- 2:27309557:- 2:27309537:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
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XWZVGdLC6gGJ
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S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
3kRDPWwiRCgi
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iezFbUdmY3A6
S9vNeQQYrhac
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a7o5Kmjr4Tdp
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3TeAZFYFxgvp
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msuJfBpJvM5H
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QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
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8cMbzB4aD5Se
93arJtwJmuS9
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BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8