Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000409133
Gene ID: ENSG00000186854
Gene Name: TRABD2A
Sequence (UNICHARACTER ENCODING) ACCCCAGCCCCGCCCGGAGGCGCCCCGCGGCCCCGGCUAGCCAGGGCGGGCGGCCACCUCUGCCCUACUCCUUCCCUCCGCGUUCCGGGCCUCGGAGCCGCCUUGAGGAGGAUGAGUCCCUGGAGCUGGUUCCUGCUGCAGACCCUCUGCCUCCUGCCCACGGGCGCAGCUUCGCGGCGCGGGGCGCCCGGCACCGCCAACUGCGAGCUCAAGCCCCAACAAAGCGAGCUGAAUUCCUUCUUGUGGACCAUUAAGCGAGACCCACCAUCUUACUUCUUUGGCACAAUCCAUGUCCCGUACACCCGAGUUUGGGЖCUUCAUCCCCGACAACUCUAAGGAGGCUUUCCUGCAGAGCAGCAUUGUGUЖCUUUGAGUUGGAUCUCACAGACCCCUAUACCAUCUCAGCUCUCACCAGCUGUCAGAUGCUGCCACAGGGCGAGAACCUCCAAGAUGUGCUCCCCAGGGЖCAUCUACUGCCGCCUCAAGCGCCACCUGGAGUAUGUCAAGCUCAUGAUGCCCUUGUGGAUGACCCCAGACCAGCGCGGCAAGGGGCUCUACGCAGACUACCUCUUCAAUGCUAUUGCCGGAAACUGGGAGCGCAAGAGGCCUGUCUGGGUGAUGCUCAUGGUCAACUCCCUGЖCUGAAGUGGЖCAUUAAGUCCCGUGGAGUGCCUGUCUUAGACCUGUUCCUUGCCCAGGAGGCUGAGCGGCUGAGGAAACAGЖCUGGGGCAGUGGAAAAGGUGGAAGAGCAGUGCCAUCCAUUGAAUGGGUUGAACUUUUCACAGGUCAUCUUUGCUUUGAACCAGACCCUCCUGCAGCAGGAAAGCCUGCGAGCAGGCAGUCUUCAGAUCCCCUACACGACGGAGGAUCUCAUCAAACACUAUAACUGCGGGGACCUCAGCUCCGUCAUCCUCAGCCAUGACAGCUCCCAGGUUCCCAAUUUUAUUAAUGCCACGCUACCACCUCAGGAGCGCAUCACUGCUCAGGAGAUUGACAGCUACUUACGCCGGGAGCUGAUCUACAAGCGGAAUGAGAGAAUAGGGAAGCGGGUGAAGGCCCUUUUGGAGGAGUUCCCUGACAAAGGCUUCUUCUUUGCCUUUGGAGCUGCUUCACAGUAGCCUUGAAAAUCAGGAGCCUUGAACUACAGUAGCUGUGAAAЖCUGUUUGCCUAAUGGUUACUGGAGGGGЖCAGAAUGGGUUCAAAGUUCCUCCAAAGCUCCAUCCUUAAAGAAUCAUCACUAUUUGACAUGUCCAAUAGUUCCCUGAAAUUUCCAUUCCCAAGCUUGUCUUCAUUUGACCUGACUCAGAGCUUGCUCUGUGUGAAUAGCCCUAUUCUUAGGGUGUGUGUUGAAAACAAUCAGUAGCAGCUGUUUAACAUCAUAGUUGCUGGAAAUAGCAAUAUUAAUUGAAGCUUACAAGGGGCUGCCCAAAAAACUUAAAAGCAAAAUCCCAUAGGGGGUAUAGAAAAGCUCUAAAAUAUUCCUAGAGAGUCACAUGCAUGAGAAGAGCUGUGCACAUGCCCAGGAAAGACCUGAGAAGGUCCUAAUCUCUCACCUCUGGC
Sequence (SHORT NAMES ENCODING) ACCCCAGCCCCGCCCGGAGGCGCCCCGCGGCCCCGGCUAGCCAGGGCGGGCGGCCACCUCUGCCCUACUCCUUCCCUCCGCGUUCCGGGCCUCGGAGCCGCCUUGAGGAGGAUGAGUCCCUGGAGCUGGUUCCUGCUGCAGACCCUCUGCCUCCUGCCCACGGGCGCAGCUUCGCGGCGCGGGGCGCCCGGCACCGCCAACUGCGAGCUCAAGCCCCAACAAAGCGAGCUGAAUUCCUUCUUGUGGACCAUUAAGCGAGACCCACCAUCUUACUUCUUUGGCACAAUCCAUGUCCCGUACACCCGAGUUUGGGm6ACUUCAUCCCCGACAACUCUAAGGAGGCUUUCCUGCAGAGCAGCAUUGUGUm6ACUUUGAGUUGGAUCUCACAGACCCCUAUACCAUCUCAGCUCUCACCAGCUGUCAGAUGCUGCCACAGGGCGAGAACCUCCAAGAUGUGCUCCCCAGGGm6ACAUCUACUGCCGCCUCAAGCGCCACCUGGAGUAUGUCAAGCUCAUGAUGCCCUUGUGGAUGACCCCAGACCAGCGCGGCAAGGGGCUCUACGCAGACUACCUCUUCAAUGCUAUUGCCGGAAACUGGGAGCGCAAGAGGCCUGUCUGGGUGAUGCUCAUGGUCAACUCCCUGm6ACUGAAGUGGm6ACAUUAAGUCCCGUGGAGUGCCUGUCUUAGACCUGUUCCUUGCCCAGGAGGCUGAGCGGCUGAGGAAACAGm6ACUGGGGCAGUGGAAAAGGUGGAAGAGCAGUGCCAUCCAUUGAAUGGGUUGAACUUUUCACAGGUCAUCUUUGCUUUGAACCAGACCCUCCUGCAGCAGGAAAGCCUGCGAGCAGGCAGUCUUCAGAUCCCCUACACGACGGAGGAUCUCAUCAAACACUAUAACUGCGGGGACCUCAGCUCCGUCAUCCUCAGCCAUGACAGCUCCCAGGUUCCCAAUUUUAUUAAUGCCACGCUACCACCUCAGGAGCGCAUCACUGCUCAGGAGAUUGACAGCUACUUACGCCGGGAGCUGAUCUACAAGCGGAAUGAGAGAAUAGGGAAGCGGGUGAAGGCCCUUUUGGAGGAGUUCCCUGACAAAGGCUUCUUCUUUGCCUUUGGAGCUGCUUCACAGUAGCCUUGAAAAUCAGGAGCCUUGAACUACAGUAGCUGUGAAAm6ACUGUUUGCCUAAUGGUUACUGGAGGGGm6ACAGAAUGGGUUCAAAGUUCCUCCAAAGCUCCAUCCUUAAAGAAUCAUCACUAUUUGACAUGUCCAAUAGUUCCCUGAAAUUUCCAUUCCCAAGCUUGUCUUCAUUUGACCUGACUCAGAGCUUGCUCUGUGUGAAUAGCCCUAUUCUUAGGGUGUGUGUUGAAAACAAUCAGUAGCAGCUGUUUAACAUCAUAGUUGCUGGAAAUAGCAAUAUUAAUUGAAGCUUACAAGGGGCUGCCCAAAAAACUUAAAAGCAAAAUCCCAUAGGGGGUAUAGAAAAGCUCUAAAAUAUUCCUAGAGAGUCACAUGCAUGAGAAGAGCUGUGCACAUGCCCAGGAAAGACCUGAGAAGGUCCUAAUCUCUCACCUCUGGC
Sequence (MODOMICS CODE ENCODING) ACCCCAGCCCCGCCCGGAGGCGCCCCGCGGCCCCGGCUAGCCAGGGCGGGCGGCCACCUCUGCCCUACUCCUUCCCUCCGCGUUCCGGGCCUCGGAGCCGCCUUGAGGAGGAUGAGUCCCUGGAGCUGGUUCCUGCUGCAGACCCUCUGCCUCCUGCCCACGGGCGCAGCUUCGCGGCGCGGGGCGCCCGGCACCGCCAACUGCGAGCUCAAGCCCCAACAAAGCGAGCUGAAUUCCUUCUUGUGGACCAUUAAGCGAGACCCACCAUCUUACUUCUUUGGCACAAUCCAUGUCCCGUACACCCGAGUUUGGG2000000006ACUUCAUCCCCGACAACUCUAAGGAGGCUUUCCUGCAGAGCAGCAUUGUGU2000000006ACUUUGAGUUGGAUCUCACAGACCCCUAUACCAUCUCAGCUCUCACCAGCUGUCAGAUGCUGCCACAGGGCGAGAACCUCCAAGAUGUGCUCCCCAGGG2000000006ACAUCUACUGCCGCCUCAAGCGCCACCUGGAGUAUGUCAAGCUCAUGAUGCCCUUGUGGAUGACCCCAGACCAGCGCGGCAAGGGGCUCUACGCAGACUACCUCUUCAAUGCUAUUGCCGGAAACUGGGAGCGCAAGAGGCCUGUCUGGGUGAUGCUCAUGGUCAACUCCCUG2000000006ACUGAAGUGG2000000006ACAUUAAGUCCCGUGGAGUGCCUGUCUUAGACCUGUUCCUUGCCCAGGAGGCUGAGCGGCUGAGGAAACAG2000000006ACUGGGGCAGUGGAAAAGGUGGAAGAGCAGUGCCAUCCAUUGAAUGGGUUGAACUUUUCACAGGUCAUCUUUGCUUUGAACCAGACCCUCCUGCAGCAGGAAAGCCUGCGAGCAGGCAGUCUUCAGAUCCCCUACACGACGGAGGAUCUCAUCAAACACUAUAACUGCGGGGACCUCAGCUCCGUCAUCCUCAGCCAUGACAGCUCCCAGGUUCCCAAUUUUAUUAAUGCCACGCUACCACCUCAGGAGCGCAUCACUGCUCAGGAGAUUGACAGCUACUUACGCCGGGAGCUGAUCUACAAGCGGAAUGAGAGAAUAGGGAAGCGGGUGAAGGCCCUUUUGGAGGAGUUCCCUGACAAAGGCUUCUUCUUUGCCUUUGGAGCUGCUUCACAGUAGCCUUGAAAAUCAGGAGCCUUGAACUACAGUAGCUGUGAAA2000000006ACUGUUUGCCUAAUGGUUACUGGAGGGG2000000006ACAGAAUGGGUUCAAAGUUCCUCCAAAGCUCCAUCCUUAAAGAAUCAUCACUAUUUGACAUGUCCAAUAGUUCCCUGAAAUUUCCAUUCCCAAGCUUGUCUUCAUUUGACCUGACUCAGAGCUUGCUCUGUGUGAAUAGCCCUAUUCUUAGGGUGUGUGUUGAAAACAAUCAGUAGCAGCUGUUUAACAUCAUAGUUGCUGGAAAUAGCAAUAUUAAUUGAAGCUUACAAGGGGCUGCCCAAAAAACUUAAAAGCAAAAUCCCAUAGGGGGUAUAGAAAAGCUCUAAAAUAUUCCUAGAGAGUCACAUGCAUGAGAAGAGCUGUGCACAUGCCCAGGAAAGACCUGAGAAGGUCCUAAUCUCUCACCUCUGGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 314 365 464 637 647 718 1154 1182
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 2:84870691:- 2:84870640:- 2:84870541:- 2:84870368:- 2:84870358:- 2:84870287:- 2:84838190:- 2:84838162:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
Lny8GcCeVGc9
XUkp6ghERQML
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
93arJtwJmuS9
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
D6ncpa2PPWj3
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
dknfVe6BK8aP
6UuHp6YApVKv
jNkxUQNx8GRd
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
6UuHp6YApVKv
jNkxUQNx8GRd
QpiKdbVikVz2
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G