Modomics - A Database of RNA Modifications

General Data

RNA Type rRNA
SOTerm S0:0001000
Original Source 6SWD_2
Sequence (UNICHARACTER ENCODING) AUUCMGGUUGAUCCUGCCGGAGGCCACUGCUAUGGGGGUCMGACUAAGCCAUGCGAGUCAAGGGGGCGUCCCUUCUGGGACGCCACCGGCGGACGGCUCAGUAACACGUCGGUAACCUACCCUCGGGAGGGGGAUAACCCCGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAGGGAGCCGUAAGGCUCCGCCCGAGGAUGGGCCGGCGGCGAUUAGGUAGUUGGUGGGGUAACGGCCCACCAAGCMGAAGAUCGGUACGGGCMGUGAGAGCGGGAGCCMGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAʍACCUCMGCAAUGCGGGAAACMGCGACGGGGGGACCCCCAGUGCCGUGCCUCUGGCACGGCUUUUCCGGAGUGUAAAAAGCUCCGGGAAUAAGGGCUGGGCAAGGCMGGUGGCAGCCGCCGCGGUAAUACCGGCGGCCMGAGUGGUGGCCACUAUUAUUGGGCCUAAAGCGGCMGUAGCCGGGCCCGUAAGUCCCUGGCGAAAUCCCACGGCUCAACMGUGGGGCUCGCUGGGGAUACUGCGGGCCUUGGGACMGGGAGAGGCMGGGGGUACCCCMGGGGUAGGGGUGAAAUCCUAUAAUCCCGGGGGGACCGCCAGUGGCGAAGGCGCCMGGCUGGAACGGGUCMGACGGUGAGGGCMGAAGGCCAGGGGAGCGAACMGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAAGGAUGCGGGCUAGGUGUCGGGCGAGCUUCGAGCUCGCCCGGUGCMGUAGGGAAGCMGUUAAGCCMGCMGCCUGGGGAGUACGGCMGCAAGGCUGAAACUUAAAGGAAUUGGCGGGGGAGCCUGCUCCUUGCACACACCGBCGUCACUCCACCCGAGCGGGGCCUAGGUGAGGCCCGAUCUCCUUCGGGAGGUCGGGUCGAGCCUAGGCUCCGUGAGGGGGGAGAAGUCGΔAЖCAAGGUAGCMGUAGGGGZZCCUACGGCUCGAUCACCUCCU
Sequence (SHORT NAMES ENCODING) AUUCpac4CGGUUGAUCCUGCCGGAGGCCACUGCUAUGGGGGUCpac4CGACUAAGCCAUGCGAGUCAAGGGGGCGUCCCUUCUGGGACGCCACCGGCGGACGGCUCAGUAACACGUCGGUAACCUACCCUCGGGAGGGGGAUAACCCCGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAGGGAGCCGUAAGGCUCCGCCCGAGGAUGGGCCGGCGGCpac4CmGAUUAGGUAGUUGGUGGGGUAACGGCCCACCAAGCpac4CGAAGAUCGGUACGGGCpac4CGUGAGAGCGGGAGCCpac4CGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGApAmACCUCpac4CGCAAUGCGGGAAACpac4CGCGACGGGGGGACCCCCAGUGCCGUGCCUCUGGCACGGCUUUUCCGGAGUGUAAAAAGCUCCGGGAAUAAGGGCUGGGCAAGGCpac4CGGUGGCAGCCGCCGCGGUAAUACCGGCGGCCpac4CGAGUGGUGGCCACUAUUAUUGGGCCUAAAGCGGCpac4CGUAGCCGGGCCCGUAAGUCCCUGGCGAAAUCCCACGGCUCAACpac4CGUGGGGCUCGCUGGGGAUACUGCGGGCCUUGGGACpac4CGGGAGAGGCpac4CGGGGGUACCCCpac4CGGGGUAGGGGUGAAAUCCUAUAAUCCCGGGGGGACCGCCAGUGGCGAAGGCGCCpac4CGGCUGGAACGGGUCpac4CGACGGUGAGGGCpac4CGAAGGCCAGGGGAGCGAACpac4CGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAAGGAUGCGGGCUAGGUGUCGGGCGAGCUUCGAGCUCGCCCGGUGCpac4CGUAGGGAAGCpac4CGUUAAGCCpac4CGCpac4CGCCUGGGGAGUACGGCpac4CGCAAGGCUGAAACUUAAAGGAAUUGGCGGGGGAGCCUGCUCCUUGCACACACCGpCmChm5CGUCACUCCACCCGAGCGGGGCCUAGGUGAGGCCCGAUCUCCUUCGGGAGGUCGGGUCGAGCCUAGGCUCCGUGAGGGGGGAGAAGUCGpnm5ges2UApm6ACAAGGUAGCpac4CGUAGGGGpYmpYmCCUACGGCUCGAUCACCUCCU
Sequence (MODOMICS CODE ENCODING) AUUC2000042551CGGUUGAUCCUGCCGGAGGCCACUGCUAUGGGGGUC2000042551CGACUAAGCCAUGCGAGUCAAGGGGGCGUCCCUUCUGGGACGCCACCGGCGGACGGCUCAGUAACACGUCGGUAACCUACCCUCGGGAGGGGGAUAACCCCGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAGGGAGCCGUAAGGCUCCGCCCGAGGAUGGGCCGGCGGC2009042551CGAUUAGGUAGUUGGUGGGGUAACGGCCCACCAAGC2000042551CGAAGAUCGGUACGGGC2000042551CGUGAGAGCGGGAGCC2000042551CGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGA2000090551AACCUC2000042551CGCAAUGCGGGAAAC2000042551CGCGACGGGGGGACCCCCAGUGCCGUGCCUCUGGCACGGCUUUUCCGGAGUGUAAAAAGCUCCGGGAAUAAGGGCUGGGCAAGGC2000042551CGGUGGCAGCCGCCGCGGUAAUACCGGCGGCC2000042551CGAGUGGUGGCCACUAUUAUUGGGCCUAAAGCGGC2000042551CGUAGCCGGGCCCGUAAGUCCCUGGCGAAAUCCCACGGCUCAAC2000042551CGUGGGGCUCGCUGGGGAUACUGCGGGCCUUGGGAC2000042551CGGGAGAGGC2000042551CGGGGGUACCCC2000042551CGGGGUAGGGGUGAAAUCCUAUAAUCCCGGGGGGACCGCCAGUGGCGAAGGCGCC2000042551CGGCUGGAACGGGUC2000042551CGACGGUGAGGGC2000042551CGAAGGCCAGGGGAGCGAAC2000042551CGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAAGGAUGCGGGCUAGGUGUCGGGCGAGCUUCGAGCUCGCCCGGUGC2000042551CGUAGGGAAGC2000042551CGUUAAGCC2000042551CGC2000042551CGCCUGGGGAGUACGGC2000042551CGCAAGGCUGAAACUUAAAGGAAUUGGCGGGGGAGCCUGCUCCUUGCACACACCG2000090551CC2000000051CGUCACUCCACCCGAGCGGGGCCUAGGUGAGGCCCGAUCUCCUUCGGGAGGUCGGGUCGAGCCUAGGCUCCGUGAGGGGGGAGAAGUCG2021510551UA2000006551ACAAGGUAGC2000042551CGUAGGGG2000909551U2000909551UCCUACGGCUCGAUCACCUCCU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the alignment 5 41 220 256 273 289 343 349 364 451 483 518 562 598 608 620 675 690 703 723 800 811 820 823 840 1349 1351 1430 1432 1442 1450 1451
Position in the sequence 5 41 238 274 291 307 361 367 382 467 499 534 578 614 624 636 691 706 719 739 816 827 836 839 856 911 913 1002 1004 1014 1022 1023
Modification positions pac4C pac4C pac4Cm pac4C pac4C pac4C pAm pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pac4C pCm hm5C pnm5ges2U pm6A pac4C Ym Ym
Level of Experimental Evidence 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
Level of Experimental Reliability 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
Source RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB RCSB