Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000473274
Gene ID: ENSG00000178752
Gene Name: ERFE
Sequence (UNICHARACTER ENCODING) ACUACCUGGUGAGUGCCGGCGCGCGGGAGGGCGGGUGAGUCCGGCCGGGCGGGAGCCGGGGUGACCAUCCGUGCCCCUCGCAGCCCGACGCCGAGGGUGCCUUCCGCCGCGGCCCGGGCCUGAACUUGACCAGCGGCCAGUACAGGGCGCCCGUGGCUGGCUUCUACGCUCUCGCCGCCACGCUGCACGUGGCGCUCGGGGAGCCGCCGAGGAGGGGGCCGCCGCGCCCCCGGGACCACCUGCGCCUGCUCAUCUGCAPCCAGUCCCGGUGCCAGCGCAACGCCUCCCUGGAGGCCAUCAUGGGCCUGGAGAGCAGCAGUGAGCUCUUCACCAUCUCUGUGAAUGGCGUCCUGUACCUGCAGAUGGGGCAGUGGACCUCCGUGUUCUUGGACAACGCCAGCGGCUGCUCCCUCACAGUGCGCAGUGGCUCCCACUUCAGUGCUGUCCUCCUGGGCGUGUGAGCGGCCACCACAGGCCCUUCCUCUCAGGGGCAAAUGGAGCACAGAUCUAGACAAUGUGUGGЖCAGUGUCAGAGUAGCAGUGGCCACAUGGAGGAGGAGGCCCACCCGGAЖCUCUGCCCACACUGGCCACUGCAGUUCAGCCCACAGAGCCACUGCAGGCAGGCCUACGGЖCGUGACACGCACGCUGGUGGUCCCGGAGCCAGGGUUGAUUCAGGACACCAUCUUGGGCUCUUAUCCAGGAAAGAAAGAGUCGGCGUGCCUGGGGGCACCUGCUAGUCUCCAGCUGCAGGCCGACUCUUUCCUGGCCUGCUCAGCACCUGCCCAGAUGGCCUCUGCGUCUUUCCUGUGCCCAGCCCCACCUUUUCCACCUCUCUUCAUGUUCUCAUGGAGUGCAAAGUGCACCAGCCAGGGCCCCUACCUGGGAGAGGGUCAGCUGACGCAGGGCUGAGGGGGCUGCCACAGGGACGUACGCUGUGUGUUCUUACUGCUUAGAAGGGACGGGGUCACUCACCACUCCCCUGGUCUCCAUCUGGGCUCCUUGGUCUUCCCUGCCCCUCCCCUAACCGUGUUCUACCUGCCAGUGGAGCUGAGCACUGCCUAGCCUGGGCCAGAGGGGCACUGGACAAGGGCCUUUGGGGGACAGUAAGUCUGGGCCCAGCUUCUAGUUCUAAUGUGUGCAAGAUUAACUCACAAAUUCACCUCAGAAGGCCUUUCCAAAUGGGAGCUCCACUCUUCCCCUCCUCUGCAAAUCUUCACAGCCAAGGCCCCUUCCACCCUCUCCAGAGGUGGAUGAGAUCCCUUUUCCCCUCCCCUCUGAGGUGCUGACUCACUGGUAGGAGCCACCCACCAGAGGAAAGAUCUAGAACGUCUUUACAGAUUGGAGACAGCCGGGCCUGCUGACCCAUCAUCCGAAUAGCUGAAGCAGAGUCUUCCACCAGGGGUGCCAGGGCCUGGCUGGGUCCAGCGGCUCUGGGAUGAGCCUCCCAAGCAUCUUUCCCACUUGGGUGGCCAUGCGGCGCUGACAUUGGЖCAGGUGGUGGACGAGAGAUGGUCCCGAGAAAGGGUGGUCUUGGGAGGGCUGGUCCCAAGCCUGCUGUGCUCCUGUGGCAGUGAUGGGGCCUGGGGAUGGGGACGGCAGCUCUCAUGAGGACACACAGGCUGUGAGCCCGCAGCCUCCUCAAAUGUAGCCUCCCACAUUUUCCCCAAAGUACAGGACUGUCCCAGAGUAGGUAGUGAAGAGGACAAGGCCCUCGGCAGCGACCUCCAGGGCCUCCUACCUGCUGAGGAAGAGUUAACCCACUGCCUCCCCACACAACAGGCUACGAAGAACCUGGUGCCUCAGGACCUCCUGGGAGCCAAGCUGGUCUGGCAAGGGCGCUCAGGCCUGGGAGAGAAGGGAGCAAUGGCCAGUCACCUUCACCUUCUAACUAACUAGCCUCCGGAUGAGGUGGCUGCCACCAGGCCCGAAUGAUCCCCAGGAGCCCAGCUUCCAAACCCCAACAUCGAAUCAAACAUCUCCAPCCCCAAGUGCAGUAACACACAAAAACCAAACACUCUGCCCUGGGAAAGGCCUGGUGCGAUUCUCAGUAGGЖCUCACACCCACCCUACCUAGAAGUACUGGGCUGGCCUGGGUACUGCAUCCGUGUGUUUUGAUAAGGGGGUGAUGUGGCCACGCCCUUAUCUAGAUUUCACUUUGUAUCCACUGGGCACAGAUAUUCUAGAGAACUUAUCUUUCACUCUUGUAAAAGCCACAUAUCCACAUCUCUUUCAUUUUUCUCAGUGUGUUAUGCAGCAAUUUAUUAAAGUAUUUAUUGUCUAAUAAAUACUGCCAAGUGGAAUAUAUUUAUA
Sequence (SHORT NAMES ENCODING) ACUACCUGGUGAGUGCCGGCGCGCGGGAGGGCGGGUGAGUCCGGCCGGGCGGGAGCCGGGGUGACCAUCCGUGCCCCUCGCAGCCCGACGCCGAGGGUGCCUUCCGCCGCGGCCCGGGCCUGAACUUGACCAGCGGCCAGUACAGGGCGCCCGUGGCUGGCUUCUACGCUCUCGCCGCCACGCUGCACGUGGCGCUCGGGGAGCCGCCGAGGAGGGGGCCGCCGCGCCCCCGGGACCACCUGCGCCUGCUCAUCUGCAYCCAGUCCCGGUGCCAGCGCAACGCCUCCCUGGAGGCCAUCAUGGGCCUGGAGAGCAGCAGUGAGCUCUUCACCAUCUCUGUGAAUGGCGUCCUGUACCUGCAGAUGGGGCAGUGGACCUCCGUGUUCUUGGACAACGCCAGCGGCUGCUCCCUCACAGUGCGCAGUGGCUCCCACUUCAGUGCUGUCCUCCUGGGCGUGUGAGCGGCCACCACAGGCCCUUCCUCUCAGGGGCAAAUGGAGCACAGAUCUAGACAAUGUGUGGm6ACAGUGUCAGAGUAGCAGUGGCCACAUGGAGGAGGAGGCCCACCCGGAm6ACUCUGCCCACACUGGCCACUGCAGUUCAGCCCACAGAGCCACUGCAGGCAGGCCUACGGm6ACGUGACACGCACGCUGGUGGUCCCGGAGCCAGGGUUGAUUCAGGACACCAUCUUGGGCUCUUAUCCAGGAAAGAAAGAGUCGGCGUGCCUGGGGGCACCUGCUAGUCUCCAGCUGCAGGCCGACUCUUUCCUGGCCUGCUCAGCACCUGCCCAGAUGGCCUCUGCGUCUUUCCUGUGCCCAGCCCCACCUUUUCCACCUCUCUUCAUGUUCUCAUGGAGUGCAAAGUGCACCAGCCAGGGCCCCUACCUGGGAGAGGGUCAGCUGACGCAGGGCUGAGGGGGCUGCCACAGGGACGUACGCUGUGUGUUCUUACUGCUUAGAAGGGACGGGGUCACUCACCACUCCCCUGGUCUCCAUCUGGGCUCCUUGGUCUUCCCUGCCCCUCCCCUAACCGUGUUCUACCUGCCAGUGGAGCUGAGCACUGCCUAGCCUGGGCCAGAGGGGCACUGGACAAGGGCCUUUGGGGGACAGUAAGUCUGGGCCCAGCUUCUAGUUCUAAUGUGUGCAAGAUUAACUCACAAAUUCACCUCAGAAGGCCUUUCCAAAUGGGAGCUCCACUCUUCCCCUCCUCUGCAAAUCUUCACAGCCAAGGCCCCUUCCACCCUCUCCAGAGGUGGAUGAGAUCCCUUUUCCCCUCCCCUCUGAGGUGCUGACUCACUGGUAGGAGCCACCCACCAGAGGAAAGAUCUAGAACGUCUUUACAGAUUGGAGACAGCCGGGCCUGCUGACCCAUCAUCCGAAUAGCUGAAGCAGAGUCUUCCACCAGGGGUGCCAGGGCCUGGCUGGGUCCAGCGGCUCUGGGAUGAGCCUCCCAAGCAUCUUUCCCACUUGGGUGGCCAUGCGGCGCUGACAUUGGm6ACAGGUGGUGGACGAGAGAUGGUCCCGAGAAAGGGUGGUCUUGGGAGGGCUGGUCCCAAGCCUGCUGUGCUCCUGUGGCAGUGAUGGGGCCUGGGGAUGGGGACGGCAGCUCUCAUGAGGACACACAGGCUGUGAGCCCGCAGCCUCCUCAAAUGUAGCCUCCCACAUUUUCCCCAAAGUACAGGACUGUCCCAGAGUAGGUAGUGAAGAGGACAAGGCCCUCGGCAGCGACCUCCAGGGCCUCCUACCUGCUGAGGAAGAGUUAACCCACUGCCUCCCCACACAACAGGCUACGAAGAACCUGGUGCCUCAGGACCUCCUGGGAGCCAAGCUGGUCUGGCAAGGGCGCUCAGGCCUGGGAGAGAAGGGAGCAAUGGCCAGUCACCUUCACCUUCUAACUAACUAGCCUCCGGAUGAGGUGGCUGCCACCAGGCCCGAAUGAUCCCCAGGAGCCCAGCUUCCAAACCCCAACAUCGAAUCAAACAUCUCCAYCCCCAAGUGCAGUAACACACAAAAACCAAACACUCUGCCCUGGGAAAGGCCUGGUGCGAUUCUCAGUAGGm6ACUCACACCCACCCUACCUAGAAGUACUGGGCUGGCCUGGGUACUGCAUCCGUGUGUUUUGAUAAGGGGGUGAUGUGGCCACGCCCUUAUCUAGAUUUCACUUUGUAUCCACUGGGCACAGAUAUUCUAGAGAACUUAUCUUUCACUCUUGUAAAAGCCACAUAUCCACAUCUCUUUCAUUUUUCUCAGUGUGUUAUGCAGCAAUUUAUUAAAGUAUUUAUUGUCUAAUAAAUACUGCCAAGUGGAAUAUAUUUAUA
Sequence (MODOMICS CODE ENCODING) ACUACCUGGUGAGUGCCGGCGCGCGGGAGGGCGGGUGAGUCCGGCCGGGCGGGAGCCGGGGUGACCAUCCGUGCCCCUCGCAGCCCGACGCCGAGGGUGCCUUCCGCCGCGGCCCGGGCCUGAACUUGACCAGCGGCCAGUACAGGGCGCCCGUGGCUGGCUUCUACGCUCUCGCCGCCACGCUGCACGUGGCGCUCGGGGAGCCGCCGAGGAGGGGGCCGCCGCGCCCCCGGGACCACCUGCGCCUGCUCAUCUGCA2000000009UCCAGUCCCGGUGCCAGCGCAACGCCUCCCUGGAGGCCAUCAUGGGCCUGGAGAGCAGCAGUGAGCUCUUCACCAUCUCUGUGAAUGGCGUCCUGUACCUGCAGAUGGGGCAGUGGACCUCCGUGUUCUUGGACAACGCCAGCGGCUGCUCCCUCACAGUGCGCAGUGGCUCCCACUUCAGUGCUGUCCUCCUGGGCGUGUGAGCGGCCACCACAGGCCCUUCCUCUCAGGGGCAAAUGGAGCACAGAUCUAGACAAUGUGUGG2000000006ACAGUGUCAGAGUAGCAGUGGCCACAUGGAGGAGGAGGCCCACCCGGA2000000006ACUCUGCCCACACUGGCCACUGCAGUUCAGCCCACAGAGCCACUGCAGGCAGGCCUACGG2000000006ACGUGACACGCACGCUGGUGGUCCCGGAGCCAGGGUUGAUUCAGGACACCAUCUUGGGCUCUUAUCCAGGAAAGAAAGAGUCGGCGUGCCUGGGGGCACCUGCUAGUCUCCAGCUGCAGGCCGACUCUUUCCUGGCCUGCUCAGCACCUGCCCAGAUGGCCUCUGCGUCUUUCCUGUGCCCAGCCCCACCUUUUCCACCUCUCUUCAUGUUCUCAUGGAGUGCAAAGUGCACCAGCCAGGGCCCCUACCUGGGAGAGGGUCAGCUGACGCAGGGCUGAGGGGGCUGCCACAGGGACGUACGCUGUGUGUUCUUACUGCUUAGAAGGGACGGGGUCACUCACCACUCCCCUGGUCUCCAUCUGGGCUCCUUGGUCUUCCCUGCCCCUCCCCUAACCGUGUUCUACCUGCCAGUGGAGCUGAGCACUGCCUAGCCUGGGCCAGAGGGGCACUGGACAAGGGCCUUUGGGGGACAGUAAGUCUGGGCCCAGCUUCUAGUUCUAAUGUGUGCAAGAUUAACUCACAAAUUCACCUCAGAAGGCCUUUCCAAAUGGGAGCUCCACUCUUCCCCUCCUCUGCAAAUCUUCACAGCCAAGGCCCCUUCCACCCUCUCCAGAGGUGGAUGAGAUCCCUUUUCCCCUCCCCUCUGAGGUGCUGACUCACUGGUAGGAGCCACCCACCAGAGGAAAGAUCUAGAACGUCUUUACAGAUUGGAGACAGCCGGGCCUGCUGACCCAUCAUCCGAAUAGCUGAAGCAGAGUCUUCCACCAGGGGUGCCAGGGCCUGGCUGGGUCCAGCGGCUCUGGGAUGAGCCUCCCAAGCAUCUUUCCCACUUGGGUGGCCAUGCGGCGCUGACAUUGG2000000006ACAGGUGGUGGACGAGAGAUGGUCCCGAGAAAGGGUGGUCUUGGGAGGGCUGGUCCCAAGCCUGCUGUGCUCCUGUGGCAGUGAUGGGGCCUGGGGAUGGGGACGGCAGCUCUCAUGAGGACACACAGGCUGUGAGCCCGCAGCCUCCUCAAAUGUAGCCUCCCACAUUUUCCCCAAAGUACAGGACUGUCCCAGAGUAGGUAGUGAAGAGGACAAGGCCCUCGGCAGCGACCUCCAGGGCCUCCUACCUGCUGAGGAAGAGUUAACCCACUGCCUCCCCACACAACAGGCUACGAAGAACCUGGUGCCUCAGGACCUCCUGGGAGCCAAGCUGGUCUGGCAAGGGCGCUCAGGCCUGGGAGAGAAGGGAGCAAUGGCCAGUCACCUUCACCUUCUAACUAACUAGCCUCCGGAUGAGGUGGCUGCCACCAGGCCCGAAUGAUCCCCAGGAGCCCAGCUUCCAAACCCCAACAUCGAAUCAAACAUCUCCA2000000009UCCCCAAGUGCAGUAACACACAAAAACCAAACACUCUGCCCUGGGAAAGGCCUGGUGCGAUUCUCAGUAGG2000000006ACUCACACCCACCCUACCUAGAAGUACUGGGCUGGCCUGGGUACUGCAUCCGUGUGUUUUGAUAAGGGGGUGAUGUGGCCACGCCCUUAUCUAGAUUUCACUUUGUAUCCACUGGGCACAGAUAUUCUAGAGAACUUAUCUUUCACUCUUGUAAAAGCCACAUAUCCACAUCUCUUUCAUUUUUCUCAGUGUGUUAUGCAGCAAUUUAUUAAAGUAUUUAUUGUCUAAUAAAUACUGCCAAGUGGAAUAUAUUUAUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 259 523 571 631 1489 1980 2051
Modification Positions Y m6A m6A m6A m6A Y m6A
Genomic Coordinates 2:238164336:+ 2:238167116:+ 2:238167164:+ 2:238167224:+ 2:238168082:+ 2:238168573:+ 2:238168644:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
Yfn77uLS5tv8
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Yfn77uLS5tv8
5Nnepx5V7yHo
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
5Nnepx5V7yHo
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
BtsJQJ3DteUq
Yfn77uLS5tv8