General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000355426
Gene ID:	ENSG00000115380
Gene Name:	EFEMP1
Sequence (UNICHARACTER ENCODING)	AGACCCACGGGGCUGCCCUCCCCUGCGCACUCCCCUCGCUGCCCGGGCCCGGAGCGCAGCGCGGCCGCACAGGUAUUUUUGCUGUGCUGUGCAAGGAACUCUGCUAGCUCAAGAUUCACAAUGUUGAAAGCCCUUUUCCUAACUAUGCUGACUCUGGCGCUGGUCAAGUCACAGGACACCGAAGAAACCAUCACGUACACGCAAUGCACUGACGGAUAUGAGUGGGAUCCUGUGAGACAGCAAUGCAAAGAUAUUGAUGAAUGUGACAUUGUCCCAGACGCUUGUAAAGGUGGAAUGAAGUGUGUCAACCACUAUGGAGGAUACCUCUGCCUUCCGAAAACAGCCCAGAUUAUUGUCAAUAAUGAЖCAGCCUCAGCAGGAAACACAACCAGCAGAAGGAACCUCAGGGGCAACCACCGGGGUUGUAGCUGCCAGCAGCAUGGCAACCAGUGGAGUGUUGCCCGGGGGUGGUUUUGUGGCCAGUGCUGCUGCAGUCGCAGGCCCUGAAAUGCAGACUGGCCGAAAUAЖCUUUGUCAUCCGGCGGAACCCAGCUGACCCUCAGCGCAUUCCCUCCAACCCUUCCCACCGUAUCCAGUGUGCAGCAGGCUACGAGCAAAGUGAACACAACGUGUGCCAAGACAUAGACGAGUGCACUGCAGGGACGCACAACUGUAGAGCAGACCAAGUGUGCAUCAAUUUACGGGGAUCCUUUGCAUGUCAGUGCCCUCCUGGAUAUCAGAAGCGAGGGGAGCAGUGCGUAGACAUAGAUGAAUGUACCAPCCCUCCAUAUUGCCACCAAAGAUGCGUGAAUACACCAGGCUCAUUUUAUUGCCAGUGCAGUCCUGGGUUUCAAUUGGCAGCAAACAACUAUACCUGCGUAGAUAUAAAUGAAUGUGAUGCCAGCAAUCAAUGUGCUCAGCAGUGCUACAACAUUCUUGGUUCAUUCAUCUGUCAGUGCAAUCAAGGAUAUGAGCUAAGCAGUGACAGGCUCAACUGUGAAGACAUUGAUGAAUGCAGAACCUCAAGCUACCUGUGUCAAUAUCAAUGUGUCAAUGAACCUGGGAAAUUCUCAUGUAUGUGCCCCCAGGGAUACCAAGUGGUGAGAAGUAGAACAUGUCAAGAUAUAAAUGAGUGUGAGACCACAAAUGAAUGCCGGGAGGAUGAAAUGUGUUGGAAUUAUCAUGGCGGCUUCCGUUGUUAUCCACGAAAUCCUUGUCAAGAUCCCUACAUUCUAЖCACCAGAGAACCGAUGUGUUUGCCCAGUCUCAAAUGCCAUGUGCCGAGAACUGCCCCAGUCAAUAGUCUACЖAAUACAUGAGCAUCCGAUCUGAUAGGUCUGUGCCAUCAGACAUCUUCCAGAUACAGGCCACAACUAUUUAUGCCAACACCAUCAAUACUUUUCGGAUUAAAUCUGGAAAUGAAAAUGGAGAGUUCUACCUACGACAAACAAGUCCUGUAAGUGCAAUGCUUGUGCUCGUGAAGUCAUUAUCAGGACCAAGAGAACAUAUCGUGGACCUGGAGAUGCUGACAGUCAGCAGUAUAGGGACCUUCCGCACAAGCUCUGUGUUAAGAUUGACAAUAAUAGUGGGGCCAUUUUCAUUUUAGUCUUUUCUAAGAGUCAACCACAGGCAUUUAAGUCAGCCAAAGAAUAUUGUUACCUUAAAGCACUAUUUUAUUUAUAGAUAUAUCUAGUGCAUCUACAUCUCUAUACUGUACACUCACCCAUAAUUCAAACAAUUACACCAUGGUAUAAAGUGGGCAUUUAAUAUGUAAAGAUUCAAAGUUUGUCUPUAUUACUAUAUGUAAAUUAGACAUUAAUCCACUAAACUGGUCUUCUUCAAGAGAGCUAAGUAUACACUAUCUGGUGAAACUUGGAUUCUUUCCUAUAAAAGUGGGACCAAGCAAUGAUGAUCUUCUGUGGUGCUUAAGGAAЖCUUACUAGAGCUCCACUAЖCAGUCUCAPAAGGAGGCAGCCAUCAUAACCAUUGAAUAGCAUGCAAGGGUAAGAAUGAGUUUUUAACUGCUUUGUAAGAAAAUGGAAAAGGUCAAUAAAGAUAUAUUUCUPUAGAAAAUGGGGAUCUGCCAUAUUUGUGUUGGUUUUUAUUUUCAUAUCCAGCCUAAAGGUGGUUGUUUAUUAUAUAGUAAUAAAUCAUUGCUGUACAAUAUGCUGGUUUCUGUAGGGUAUUUUUAAUUUUGUCAGAAAUUUUAGAUUGUGAAUAUUUUGUAAAAAACAGUAAGCAAAAUUUUCCAGAAUUCCCAAAAUGAACCAGAUAUCCCCUAGAAAAUUAUACUAUUGAGAAAUCUAUGGGGAGGAUAUGAGAAAAUAAAUUCCUUCUAAACCACAUUGGAACUGACCUGAAGAAGCAAACUCGGAAAAUAUAAUAACAUCCCUGAAUUCAGGЖCUUCCACAAGAUGCAGAACAAAAUGGAUAAAAGGUAUUUCACUGGAGAAGUUUUAAUUUCUAAGUAAAAUUUAAAUCCUAACACUUCACUAAUUUAUAACUAAAAUUUCUCAUCUUCGUACUUGAUGCUCACAGAGGAAGAAAAUGAUGAUGGUUUUUAUUCCUGGCAPCCAGAGUGACAGUGAЖCUUAAGCAAAUUACCCUCCUACCCAAUUCUAUGGAAUAUUUUAUACGUCUCCUUGUUUAAAAUGUCACUGCUPUACUUUGAUGUAUCAUAUUUUUAAAUAAAAAUAAAUAUUCCUUUAGAAGAUCA
Sequence (SHORT NAMES ENCODING)	AGACCCACGGGGCUGCCCUCCCCUGCGCACUCCCCUCGCUGCCCGGGCCCGGAGCGCAGCGCGGCCGCACAGGUAUUUUUGCUGUGCUGUGCAAGGAACUCUGCUAGCUCAAGAUUCACAAUGUUGAAAGCCCUUUUCCUAACUAUGCUGACUCUGGCGCUGGUCAAGUCACAGGACACCGAAGAAACCAUCACGUACACGCAAUGCACUGACGGAUAUGAGUGGGAUCCUGUGAGACAGCAAUGCAAAGAUAUUGAUGAAUGUGACAUUGUCCCAGACGCUUGUAAAGGUGGAAUGAAGUGUGUCAACCACUAUGGAGGAUACCUCUGCCUUCCGAAAACAGCCCAGAUUAUUGUCAAUAAUGAm6ACAGCCUCAGCAGGAAACACAACCAGCAGAAGGAACCUCAGGGGCAACCACCGGGGUUGUAGCUGCCAGCAGCAUGGCAACCAGUGGAGUGUUGCCCGGGGGUGGUUUUGUGGCCAGUGCUGCUGCAGUCGCAGGCCCUGAAAUGCAGACUGGCCGAAAUAm6ACUUUGUCAUCCGGCGGAACCCAGCUGACCCUCAGCGCAUUCCCUCCAACCCUUCCCACCGUAUCCAGUGUGCAGCAGGCUACGAGCAAAGUGAACACAACGUGUGCCAAGACAUAGACGAGUGCACUGCAGGGACGCACAACUGUAGAGCAGACCAAGUGUGCAUCAAUUUACGGGGAUCCUUUGCAUGUCAGUGCCCUCCUGGAUAUCAGAAGCGAGGGGAGCAGUGCGUAGACAUAGAUGAAUGUACCAYCCCUCCAUAUUGCCACCAAAGAUGCGUGAAUACACCAGGCUCAUUUUAUUGCCAGUGCAGUCCUGGGUUUCAAUUGGCAGCAAACAACUAUACCUGCGUAGAUAUAAAUGAAUGUGAUGCCAGCAAUCAAUGUGCUCAGCAGUGCUACAACAUUCUUGGUUCAUUCAUCUGUCAGUGCAAUCAAGGAUAUGAGCUAAGCAGUGACAGGCUCAACUGUGAAGACAUUGAUGAAUGCAGAACCUCAAGCUACCUGUGUCAAUAUCAAUGUGUCAAUGAACCUGGGAAAUUCUCAUGUAUGUGCCCCCAGGGAUACCAAGUGGUGAGAAGUAGAACAUGUCAAGAUAUAAAUGAGUGUGAGACCACAAAUGAAUGCCGGGAGGAUGAAAUGUGUUGGAAUUAUCAUGGCGGCUUCCGUUGUUAUCCACGAAAUCCUUGUCAAGAUCCCUACAUUCUAm6ACACCAGAGAACCGAUGUGUUUGCCCAGUCUCAAAUGCCAUGUGCCGAGAACUGCCCCAGUCAAUAGUCUACm6AAAUACAUGAGCAUCCGAUCUGAUAGGUCUGUGCCAUCAGACAUCUUCCAGAUACAGGCCACAACUAUUUAUGCCAACACCAUCAAUACUUUUCGGAUUAAAUCUGGAAAUGAAAAUGGAGAGUUCUACCUACGACAAACAAGUCCUGUAAGUGCAAUGCUUGUGCUCGUGAAGUCAUUAUCAGGACCAAGAGAACAUAUCGUGGACCUGGAGAUGCUGACAGUCAGCAGUAUAGGGACCUUCCGCACAAGCUCUGUGUUAAGAUUGACAAUAAUAGUGGGGCCAUUUUCAUUUUAGUCUUUUCUAAGAGUCAACCACAGGCAUUUAAGUCAGCCAAAGAAUAUUGUUACCUUAAAGCACUAUUUUAUUUAUAGAUAUAUCUAGUGCAUCUACAUCUCUAUACUGUACACUCACCCAUAAUUCAAACAAUUACACCAUGGUAUAAAGUGGGCAUUUAAUAUGUAAAGAUUCAAAGUUUGUCUYUAUUACUAUAUGUAAAUUAGACAUUAAUCCACUAAACUGGUCUUCUUCAAGAGAGCUAAGUAUACACUAUCUGGUGAAACUUGGAUUCUUUCCUAUAAAAGUGGGACCAAGCAAUGAUGAUCUUCUGUGGUGCUUAAGGAAm6ACUUACUAGAGCUCCACUAm6ACAGUCUCAYAAGGAGGCAGCCAUCAUAACCAUUGAAUAGCAUGCAAGGGUAAGAAUGAGUUUUUAACUGCUUUGUAAGAAAAUGGAAAAGGUCAAUAAAGAUAUAUUUCUYUAGAAAAUGGGGAUCUGCCAUAUUUGUGUUGGUUUUUAUUUUCAUAUCCAGCCUAAAGGUGGUUGUUUAUUAUAUAGUAAUAAAUCAUUGCUGUACAAUAUGCUGGUUUCUGUAGGGUAUUUUUAAUUUUGUCAGAAAUUUUAGAUUGUGAAUAUUUUGUAAAAAACAGUAAGCAAAAUUUUCCAGAAUUCCCAAAAUGAACCAGAUAUCCCCUAGAAAAUUAUACUAUUGAGAAAUCUAUGGGGAGGAUAUGAGAAAAUAAAUUCCUUCUAAACCACAUUGGAACUGACCUGAAGAAGCAAACUCGGAAAAUAUAAUAACAUCCCUGAAUUCAGGm6ACUUCCACAAGAUGCAGAACAAAAUGGAUAAAAGGUAUUUCACUGGAGAAGUUUUAAUUUCUAAGUAAAAUUUAAAUCCUAACACUUCACUAAUUUAUAACUAAAAUUUCUCAUCUUCGUACUUGAUGCUCACAGAGGAAGAAAAUGAUGAUGGUUUUUAUUCCUGGCAYCCAGAGUGACAGUGAm6ACUUAAGCAAAUUACCCUCCUACCCAAUUCUAUGGAAUAUUUUAUACGUCUCCUUGUUUAAAAUGUCACUGCUYUACUUUGAUGUAUCAUAUUUUUAAAUAAAAAUAAAUAUUCCUUUAGAAGAUCA
Sequence (MODOMICS CODE ENCODING)	AGACCCACGGGGCUGCCCUCCCCUGCGCACUCCCCUCGCUGCCCGGGCCCGGAGCGCAGCGCGGCCGCACAGGUAUUUUUGCUGUGCUGUGCAAGGAACUCUGCUAGCUCAAGAUUCACAAUGUUGAAAGCCCUUUUCCUAACUAUGCUGACUCUGGCGCUGGUCAAGUCACAGGACACCGAAGAAACCAUCACGUACACGCAAUGCACUGACGGAUAUGAGUGGGAUCCUGUGAGACAGCAAUGCAAAGAUAUUGAUGAAUGUGACAUUGUCCCAGACGCUUGUAAAGGUGGAAUGAAGUGUGUCAACCACUAUGGAGGAUACCUCUGCCUUCCGAAAACAGCCCAGAUUAUUGUCAAUAAUGA2000000006ACAGCCUCAGCAGGAAACACAACCAGCAGAAGGAACCUCAGGGGCAACCACCGGGGUUGUAGCUGCCAGCAGCAUGGCAACCAGUGGAGUGUUGCCCGGGGGUGGUUUUGUGGCCAGUGCUGCUGCAGUCGCAGGCCCUGAAAUGCAGACUGGCCGAAAUA2000000006ACUUUGUCAUCCGGCGGAACCCAGCUGACCCUCAGCGCAUUCCCUCCAACCCUUCCCACCGUAUCCAGUGUGCAGCAGGCUACGAGCAAAGUGAACACAACGUGUGCCAAGACAUAGACGAGUGCACUGCAGGGACGCACAACUGUAGAGCAGACCAAGUGUGCAUCAAUUUACGGGGAUCCUUUGCAUGUCAGUGCCCUCCUGGAUAUCAGAAGCGAGGGGAGCAGUGCGUAGACAUAGAUGAAUGUACCA2000000009UCCCUCCAUAUUGCCACCAAAGAUGCGUGAAUACACCAGGCUCAUUUUAUUGCCAGUGCAGUCCUGGGUUUCAAUUGGCAGCAAACAACUAUACCUGCGUAGAUAUAAAUGAAUGUGAUGCCAGCAAUCAAUGUGCUCAGCAGUGCUACAACAUUCUUGGUUCAUUCAUCUGUCAGUGCAAUCAAGGAUAUGAGCUAAGCAGUGACAGGCUCAACUGUGAAGACAUUGAUGAAUGCAGAACCUCAAGCUACCUGUGUCAAUAUCAAUGUGUCAAUGAACCUGGGAAAUUCUCAUGUAUGUGCCCCCAGGGAUACCAAGUGGUGAGAAGUAGAACAUGUCAAGAUAUAAAUGAGUGUGAGACCACAAAUGAAUGCCGGGAGGAUGAAAUGUGUUGGAAUUAUCAUGGCGGCUUCCGUUGUUAUCCACGAAAUCCUUGUCAAGAUCCCUACAUUCUA2000000006ACACCAGAGAACCGAUGUGUUUGCCCAGUCUCAAAUGCCAUGUGCCGAGAACUGCCCCAGUCAAUAGUCUAC2000000006AAAUACAUGAGCAUCCGAUCUGAUAGGUCUGUGCCAUCAGACAUCUUCCAGAUACAGGCCACAACUAUUUAUGCCAACACCAUCAAUACUUUUCGGAUUAAAUCUGGAAAUGAAAAUGGAGAGUUCUACCUACGACAAACAAGUCCUGUAAGUGCAAUGCUUGUGCUCGUGAAGUCAUUAUCAGGACCAAGAGAACAUAUCGUGGACCUGGAGAUGCUGACAGUCAGCAGUAUAGGGACCUUCCGCACAAGCUCUGUGUUAAGAUUGACAAUAAUAGUGGGGCCAUUUUCAUUUUAGUCUUUUCUAAGAGUCAACCACAGGCAUUUAAGUCAGCCAAAGAAUAUUGUUACCUUAAAGCACUAUUUUAUUUAUAGAUAUAUCUAGUGCAUCUACAUCUCUAUACUGUACACUCACCCAUAAUUCAAACAAUUACACCAUGGUAUAAAGUGGGCAUUUAAUAUGUAAAGAUUCAAAGUUUGUCU2000000009UUAUUACUAUAUGUAAAUUAGACAUUAAUCCACUAAACUGGUCUUCUUCAAGAGAGCUAAGUAUACACUAUCUGGUGAAACUUGGAUUCUUUCCUAUAAAAGUGGGACCAAGCAAUGAUGAUCUUCUGUGGUGCUUAAGGAA2000000006ACUUACUAGAGCUCCACUA2000000006ACAGUCUCA2000000009UAAGGAGGCAGCCAUCAUAACCAUUGAAUAGCAUGCAAGGGUAAGAAUGAGUUUUUAACUGCUUUGUAAGAAAAUGGAAAAGGUCAAUAAAGAUAUAUUUCU2000000009UUAGAAAAUGGGGAUCUGCCAUAUUUGUGUUGGUUUUUAUUUUCAUAUCCAGCCUAAAGGUGGUUGUUUAUUAUAUAGUAAUAAAUCAUUGCUGUACAAUAUGCUGGUUUCUGUAGGGUAUUUUUAAUUUUGUCAGAAAUUUUAGAUUGUGAAUAUUUUGUAAAAAACAGUAAGCAAAAUUUUCCAGAAUUCCCAAAAUGAACCAGAUAUCCCCUAGAAAAUUAUACUAUUGAGAAAUCUAUGGGGAGGAUAUGAGAAAAUAAAUUCCUUCUAAACCACAUUGGAACUGACCUGAAGAAGCAAACUCGGAAAAUAUAAUAACAUCCCUGAAUUCAGG2000000006ACUUCCACAAGAUGCAGAACAAAAUGGAUAAAAGGUAUUUCACUGGAGAAGUUUUAAUUUCUAAGUAAAAUUUAAAUCCUAACACUUCACUAAUUUAUAACUAAAAUUUCUCAUCUUCGUACUUGAUGCUCACAGAGGAAGAAAAUGAUGAUGGUUUUUAUUCCUGGCA2000000009UCCAGAGUGACAGUGA2000000006ACUUAAGCAAAUUACCCUCCUACCCAAUUCUAUGGAAUAUUUUAUACGUCUCCUUGUUUAAAAUGUCACUGCU2000000009UUACUUUGAUGUAUCAUAUUUUUAAAUAAAAAUAAAUAUUCCUUUAGAAGAUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	366	527	779	1234	1306	1788	1930	1949	1958	2060	2397	2566	2582	2655
Modification Positions	m6A	m6A	Y	m6A	m6A	Y	m6A	m6A	Y	Y	m6A	Y	m6A	Y
Genomic Coordinates	2:55917936:-	2:55917775:-	2:55877847:-	2:55871010:-	2:55870854:-	2:55866887:-	2:55866745:-	2:55866726:-	2:55866717:-	2:55866615:-	2:55866278:-	2:55866109:-	2:55866093:-	2:55866020:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Mk6ShCGm6RBJ	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML dknfVe6BK8aP Mk6ShCGm6RBJ	dknfVe6BK8aP Mk6ShCGm6RBJ	dknfVe6BK8aP Mk6ShCGm6RBJ	3kRDPWwiRCgi L6w2k2VEv4EY	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	CxQaH6qDB9bC dknfVe6BK8aP Mk6ShCGm6RBJ	6UuHp6YApVKv VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G CxQaH6qDB9bC dknfVe6BK8aP	CxQaH6qDB9bC dknfVe6BK8aP	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa XUkp6ghERQML dknfVe6BK8aP	CxQaH6qDB9bC dknfVe6BK8aP