Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000688542
Gene ID: ENSG00000291134
Gene Name: WASH2P
Sequence (UNICHARACTER ENCODING) AGAUAGGCUGAGAGACGCAGGAAAGCGGGUCAAUGUGUAGGGCUGGAGGGCAGGGGCGGGCCCUGGGCCUGGGCUGGGGGUCCUGCCCCGGGGCGCACCCAGGGCGAGGGCUGCCCGGAGGAGCCGAGGCUGGCGGACAGCUUGGCCCUGAGCUUGAGGGGAAGGCAGCGAUGGGACAAAGGACGGAGGUCUAGGAAGAGGGUCUGCAGAGCAGAAAGCACGGGUAGGGGCGGCCUGACGCUCGGAAGACAACGGAUGGGAGCCGUGUGCACGUCGGGAGCUCGGAGUGAGCGCACCAUGACUCCUGUGAGGAUGCAGCACUCCCUGGCAGGUCAGACCUAUGCCGUGCCCCUCAUCCAGCCAGACCUGCGGUGAGAGGAGGCCGUCCAGCAGAUGGCAGAUGCCCUGCAGUACCUGCAGAAGGUCUCUGGAGACAUCUUCAGCAGGUAGAGCAGAGCCGGAGCCAGGUGCAGGCCAUUGGAGAGAAGGUCUCCUUGGCCCAGGCCAAGAUUGAGAAGAUCAAGGGCAGCAAGAAGGCCAUCAAGGUGUUCUCCAGUGCCAAGUACCCUGCUCCAGAGCGCCUGCAGGAAUAUGGCUCCAUCUUCACGGGCGCCCAGGACCCUGGCCUGCAGAGACGCCCCCGCCACAGGAUCCAGAGCAAGCACCGCCCCCUGGACGAGCGGGCCCUGCAGGAGAAGCUGAAGGACUUUCCUGUGUGCGUGAGCACCAAGCCGGAGCCCGAGGACGAUGCAGAAGAGGGACUUGGGGGUCUUCCCAGCAACAUCAGCUCUGUCAGCUCCUUGCUGCUCUUCAACACCACCUAGAACCUGUAUGGCCAGAAGGCAGGGCCGAGGGGUGUGGGCGGGAGGCCCGGCCUGGCUUAGUGGGGACCCAGGGCAUCAGACACAGGUACAGCACAUGGGCCAGGAGCCAGGGGGUGACUGGGGUGGCUCGGCUCGGGAGGCUUGGGACCCCAAGUGCACGCUGUGCCCCUGAUGAUGUGGGAGAGGAACAUGGGCUCAGGACAGCGGGUGUCAGCUUGCCUGACCCCCAUGUCACCUCUGUAGGUACAAGAAGUAUGUCUUCCUGGACCCCCUGGCUGGUGCUGUAACAAAGACCCAUGUGAUGCUGGGGGCAGAGACAGAGGAGAAGCUGUUUGAUGCCCCCUUGUCCAUCAGCAAGAGAGAGCAGCUGGAACAGCAGGUCCCUGAGAACUACUUCUAUGUGCCAGACCUGGGCCAGGUGCCUGAGAUUGAUGUUCCAUCCUACCUGCCUGACCUGCCCGGCAUUGCCAACGACCUCAUGUACAUUGCCGACCUGGGCCCCGGCAUUGCCCCCUCUGCCCCUGGCACCAUUCCAGAACUGCCCACCUUCCACACUGAGGUAGCCGAGCCUCUCAAGACCUACAAGAUGGGGUACUAACACCACCCCCACCGCCCCCACCACCACCCCCAGCUCCUGAGGUGCUGGCCAGUGCACCCCCACUCCCACCCUCAACCGCGGCCCCUGUAGGCCAAGGCGCCAGGCAGGACGACAGCAGCAGCAGCGCGUCUCCUUCAGUCCAGGGAGCUCCCAGGGAAGUGGUCGACCCCUCCGGUGGCCGGGCCACUCUGCUAGAGUCCAUCCGCCAAGCUGGGGGCAUCGGCAAGGCCAAGCUGCGCAGCAUGAAGGAGCGAAAGCUGGAGAAGAAGAAGCAGAAGGAGCAGGAGCAAGUGAGAGCCACGAGCCAAGGUGGGCACUUGAUGUCGGAUCUCUUCAACAAGCUGGUCAUGAGGCGCAAGGGCAUCUCUGGGAAAGGACCUGGGGCUGGUGAGGGGCCCGGAGGAGCCUUUGCCCGUGUGUCAGACUCCAUCCCUCCUCUGCCGCCACCGCAGCAGCCACAGGCAGAGGAGGACGAGGAUGACUGGGAAUCCUAGGGGGCUCCAUGACACCUUCCCCCCCAGACCCAGACUUGGGCCGUUGCUCUGACAUGGЖCACAGCCAGGACAAGCUGCUCAGACCUGCUUCCCUGGGAGGGGGUGACGGAACCAGCACUGUGUGGAGACCAGCUUCAAGGAGCGGAAGGCUGGCUUGAGGCCACACAGCUGGGGCGGGGЖCUUCUGUCUGCCUGUACUUCAUGGGGGGACGGCUCCACCCAGCCUGCGCCACUGUGUUCUUCUCUUAAGAGGCUUCCAGAGAAAACGGCACACCAAUCAAUAAAGAACUGAGCAGAAACCAACAGUGUGCUUUUAAUAAAGGACCUCUAGCUGUGCAGGA
Sequence (SHORT NAMES ENCODING) AGAUAGGCUGAGAGACGCAGGAAAGCGGGUCAAUGUGUAGGGCUGGAGGGCAGGGGCGGGCCCUGGGCCUGGGCUGGGGGUCCUGCCCCGGGGCGCACCCAGGGCGAGGGCUGCCCGGAGGAGCCGAGGCUGGCGGACAGCUUGGCCCUGAGCUUGAGGGGAAGGCAGCGAUGGGACAAAGGACGGAGGUCUAGGAAGAGGGUCUGCAGAGCAGAAAGCACGGGUAGGGGCGGCCUGACGCUCGGAAGACAACGGAUGGGAGCCGUGUGCACGUCGGGAGCUCGGAGUGAGCGCACCAUGACUCCUGUGAGGAUGCAGCACUCCCUGGCAGGUCAGACCUAUGCCGUGCCCCUCAUCCAGCCAGACCUGCGGUGAGAGGAGGCCGUCCAGCAGAUGGCAGAUGCCCUGCAGUACCUGCAGAAGGUCUCUGGAGACAUCUUCAGCAGGUAGAGCAGAGCCGGAGCCAGGUGCAGGCCAUUGGAGAGAAGGUCUCCUUGGCCCAGGCCAAGAUUGAGAAGAUCAAGGGCAGCAAGAAGGCCAUCAAGGUGUUCUCCAGUGCCAAGUACCCUGCUCCAGAGCGCCUGCAGGAAUAUGGCUCCAUCUUCACGGGCGCCCAGGACCCUGGCCUGCAGAGACGCCCCCGCCACAGGAUCCAGAGCAAGCACCGCCCCCUGGACGAGCGGGCCCUGCAGGAGAAGCUGAAGGACUUUCCUGUGUGCGUGAGCACCAAGCCGGAGCCCGAGGACGAUGCAGAAGAGGGACUUGGGGGUCUUCCCAGCAACAUCAGCUCUGUCAGCUCCUUGCUGCUCUUCAACACCACCUAGAACCUGUAUGGCCAGAAGGCAGGGCCGAGGGGUGUGGGCGGGAGGCCCGGCCUGGCUUAGUGGGGACCCAGGGCAUCAGACACAGGUACAGCACAUGGGCCAGGAGCCAGGGGGUGACUGGGGUGGCUCGGCUCGGGAGGCUUGGGACCCCAAGUGCACGCUGUGCCCCUGAUGAUGUGGGAGAGGAACAUGGGCUCAGGACAGCGGGUGUCAGCUUGCCUGACCCCCAUGUCACCUCUGUAGGUACAAGAAGUAUGUCUUCCUGGACCCCCUGGCUGGUGCUGUAACAAAGACCCAUGUGAUGCUGGGGGCAGAGACAGAGGAGAAGCUGUUUGAUGCCCCCUUGUCCAUCAGCAAGAGAGAGCAGCUGGAACAGCAGGUCCCUGAGAACUACUUCUAUGUGCCAGACCUGGGCCAGGUGCCUGAGAUUGAUGUUCCAUCCUACCUGCCUGACCUGCCCGGCAUUGCCAACGACCUCAUGUACAUUGCCGACCUGGGCCCCGGCAUUGCCCCCUCUGCCCCUGGCACCAUUCCAGAACUGCCCACCUUCCACACUGAGGUAGCCGAGCCUCUCAAGACCUACAAGAUGGGGUACUAACACCACCCCCACCGCCCCCACCACCACCCCCAGCUCCUGAGGUGCUGGCCAGUGCACCCCCACUCCCACCCUCAACCGCGGCCCCUGUAGGCCAAGGCGCCAGGCAGGACGACAGCAGCAGCAGCGCGUCUCCUUCAGUCCAGGGAGCUCCCAGGGAAGUGGUCGACCCCUCCGGUGGCCGGGCCACUCUGCUAGAGUCCAUCCGCCAAGCUGGGGGCAUCGGCAAGGCCAAGCUGCGCAGCAUGAAGGAGCGAAAGCUGGAGAAGAAGAAGCAGAAGGAGCAGGAGCAAGUGAGAGCCACGAGCCAAGGUGGGCACUUGAUGUCGGAUCUCUUCAACAAGCUGGUCAUGAGGCGCAAGGGCAUCUCUGGGAAAGGACCUGGGGCUGGUGAGGGGCCCGGAGGAGCCUUUGCCCGUGUGUCAGACUCCAUCCCUCCUCUGCCGCCACCGCAGCAGCCACAGGCAGAGGAGGACGAGGAUGACUGGGAAUCCUAGGGGGCUCCAUGACACCUUCCCCCCCAGACCCAGACUUGGGCCGUUGCUCUGACAUGGm6ACACAGCCAGGACAAGCUGCUCAGACCUGCUUCCCUGGGAGGGGGUGACGGAACCAGCACUGUGUGGAGACCAGCUUCAAGGAGCGGAAGGCUGGCUUGAGGCCACACAGCUGGGGCGGGGm6ACUUCUGUCUGCCUGUACUUCAUGGGGGGACGGCUCCACCCAGCCUGCGCCACUGUGUUCUUCUCUUAAGAGGCUUCCAGAGAAAACGGCACACCAAUCAAUAAAGAACUGAGCAGAAACCAACAGUGUGCUUUUAAUAAAGGACCUCUAGCUGUGCAGGA
Sequence (MODOMICS CODE ENCODING) AGAUAGGCUGAGAGACGCAGGAAAGCGGGUCAAUGUGUAGGGCUGGAGGGCAGGGGCGGGCCCUGGGCCUGGGCUGGGGGUCCUGCCCCGGGGCGCACCCAGGGCGAGGGCUGCCCGGAGGAGCCGAGGCUGGCGGACAGCUUGGCCCUGAGCUUGAGGGGAAGGCAGCGAUGGGACAAAGGACGGAGGUCUAGGAAGAGGGUCUGCAGAGCAGAAAGCACGGGUAGGGGCGGCCUGACGCUCGGAAGACAACGGAUGGGAGCCGUGUGCACGUCGGGAGCUCGGAGUGAGCGCACCAUGACUCCUGUGAGGAUGCAGCACUCCCUGGCAGGUCAGACCUAUGCCGUGCCCCUCAUCCAGCCAGACCUGCGGUGAGAGGAGGCCGUCCAGCAGAUGGCAGAUGCCCUGCAGUACCUGCAGAAGGUCUCUGGAGACAUCUUCAGCAGGUAGAGCAGAGCCGGAGCCAGGUGCAGGCCAUUGGAGAGAAGGUCUCCUUGGCCCAGGCCAAGAUUGAGAAGAUCAAGGGCAGCAAGAAGGCCAUCAAGGUGUUCUCCAGUGCCAAGUACCCUGCUCCAGAGCGCCUGCAGGAAUAUGGCUCCAUCUUCACGGGCGCCCAGGACCCUGGCCUGCAGAGACGCCCCCGCCACAGGAUCCAGAGCAAGCACCGCCCCCUGGACGAGCGGGCCCUGCAGGAGAAGCUGAAGGACUUUCCUGUGUGCGUGAGCACCAAGCCGGAGCCCGAGGACGAUGCAGAAGAGGGACUUGGGGGUCUUCCCAGCAACAUCAGCUCUGUCAGCUCCUUGCUGCUCUUCAACACCACCUAGAACCUGUAUGGCCAGAAGGCAGGGCCGAGGGGUGUGGGCGGGAGGCCCGGCCUGGCUUAGUGGGGACCCAGGGCAUCAGACACAGGUACAGCACAUGGGCCAGGAGCCAGGGGGUGACUGGGGUGGCUCGGCUCGGGAGGCUUGGGACCCCAAGUGCACGCUGUGCCCCUGAUGAUGUGGGAGAGGAACAUGGGCUCAGGACAGCGGGUGUCAGCUUGCCUGACCCCCAUGUCACCUCUGUAGGUACAAGAAGUAUGUCUUCCUGGACCCCCUGGCUGGUGCUGUAACAAAGACCCAUGUGAUGCUGGGGGCAGAGACAGAGGAGAAGCUGUUUGAUGCCCCCUUGUCCAUCAGCAAGAGAGAGCAGCUGGAACAGCAGGUCCCUGAGAACUACUUCUAUGUGCCAGACCUGGGCCAGGUGCCUGAGAUUGAUGUUCCAUCCUACCUGCCUGACCUGCCCGGCAUUGCCAACGACCUCAUGUACAUUGCCGACCUGGGCCCCGGCAUUGCCCCCUCUGCCCCUGGCACCAUUCCAGAACUGCCCACCUUCCACACUGAGGUAGCCGAGCCUCUCAAGACCUACAAGAUGGGGUACUAACACCACCCCCACCGCCCCCACCACCACCCCCAGCUCCUGAGGUGCUGGCCAGUGCACCCCCACUCCCACCCUCAACCGCGGCCCCUGUAGGCCAAGGCGCCAGGCAGGACGACAGCAGCAGCAGCGCGUCUCCUUCAGUCCAGGGAGCUCCCAGGGAAGUGGUCGACCCCUCCGGUGGCCGGGCCACUCUGCUAGAGUCCAUCCGCCAAGCUGGGGGCAUCGGCAAGGCCAAGCUGCGCAGCAUGAAGGAGCGAAAGCUGGAGAAGAAGAAGCAGAAGGAGCAGGAGCAAGUGAGAGCCACGAGCCAAGGUGGGCACUUGAUGUCGGAUCUCUUCAACAAGCUGGUCAUGAGGCGCAAGGGCAUCUCUGGGAAAGGACCUGGGGCUGGUGAGGGGCCCGGAGGAGCCUUUGCCCGUGUGUCAGACUCCAUCCCUCCUCUGCCGCCACCGCAGCAGCCACAGGCAGAGGAGGACGAGGAUGACUGGGAAUCCUAGGGGGCUCCAUGACACCUUCCCCCCCAGACCCAGACUUGGGCCGUUGCUCUGACAUGG2000000006ACACAGCCAGGACAAGCUGCUCAGACCUGCUUCCCUGGGAGGGGGUGACGGAACCAGCACUGUGUGGAGACCAGCUUCAAGGAGCGGAAGGCUGGCUUGAGGCCACACAGCUGGGGCGGGG2000000006ACUUCUGUCUGCCUGUACUUCAUGGGGGGACGGCUCCACCCAGCCUGCGCCACUGUGUUCUUCUCUUAAGAGGCUUCCAGAGAAAACGGCACACCAAUCAAUAAAGAACUGAGCAGAAACCAACAGUGUGCUUUUAAUAAAGGACCUCUAGCUGUGCAGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1974 2095
Modification Positions m6A m6A
Genomic Coordinates 2:113598798:+ 2:113598919:+
Level of Experimental Evidence 3 3
Level of Experimental Reliability 3 3
Source Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
834aFpha8RvT
ksEP666umrV9
3TeAZFYFxgvp
4HMi5ykupT9V
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn