General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000446425
Gene ID:	ENSG00000173960
Gene Name:	UBXN2A
Sequence (UNICHARACTER ENCODING)	AGCUCUCCCCGACCGCAGGGCUGGGGCGACCAGAAAAGCCAGACUAAUCAGGACGAGUUCGGGCGUGGAAUUGGGCCUGAAGCCCUCAUGCCCAGCCAGGCCUGAAUGCCCCAGACCCCACCGUCACCCCCGUGGCCUGGAUGGAGCAGGGGACGGCCGGCGAAGGCGCGGGGUGGAAGGGGAGCGGCGACGAAGGCGCGAGGAGCUGACUGGGAAUCCCCAAGCUACCCGAGGCAAGACACUGAACUUGAGUCGCACUUUUCAUGCCUGUAGAAAUGAGAAUGACAGCUGUGAUAAAAAAAAAAUUCAUCUGGGCGGUAUCUGGAACUUGUAAGGCGAAAGAGAAUGAAAGACGUAGAUAACCUCAAAAGUAUAAAAGAAGAAUGAGUCUCUCUCUGUCGCCAGGCUGGAGUGCAGUGGCAUGAUCUCGGCUCACUGCAACCUCCGCCUCCCAGGUUCAAGCGAUUCUUCUGCCUCAGCCUCCUGAGUAGCUGGGACUACAGGGUUUGUGAAACAGGAUCUGAUAAUCAACCUCUUGGUAAUAAUCAACAAUCAAAUUGUGAAUAUUUUGUUGAUAGCCUUUUUGAGGAAGCUCAGAAGGUUAGUUCCAAAUGUGUGUCUCCCGCUGAACAGAAGAAACAGGUAGAUGUAAAUAUAAAAUUAUGGAAAAACGGAUUCACCGUCAACGACGAUUUCAGAAGUUAUUCCGAUGGUGCCAGUCAGCAGUUUUUGAACUCCAUCAAAAAGGGGGAAUUACCUUCAGAAUUACAGGGAAUUUUUGAUAAAGAAGAGGUGGACGUUAAAGUUGAAGACAAGAAAAAUGAAAUAUGUUUGUCUACGAAGCCUGUGUUCCAGCCCUUUUCAGGACAGGGUCACAGACUAGGAAGUGCCACACCAAAAAUUGUUUCUAAAGCAAAGAAUAUUGAAGUUGAAAAUAAAAAUAAUUUGUCUGCUGUUCCACUGAACAACUUGGAACCCAUUACUAAUAUACAGAUCUGGUUGGCCAAUGGAAAAAGGAUUGUCCAGAAAUUUAACAUUACUCAUAGAGUAAGCCAUAUCAAAGACUUCAUUGAAAAAUACCAAGGAUCUCAAAGAAGUCCUCCGUUUUCCCUGGCAACAGCUCUUCCUGUCCUCAGGUUGCUAGAUGAGACACUCACACUGGAAGAAGCAGAUUUACAGAAUGCUGUCAUCAUUCAGAGЖCUCCAAAAAACUGCAUCUUUUAGAGAЖCUUUCAGAGCACUGAUUUUUGAUAGЖCUAAGUGGAAAAUUUGCAGAGAAAUGAUGGUUGUAAGUGGЖCAUGCAAACCAAAAUUGGGGAUUGGAGAAGUCAGACUCACUAGЖCUUUUGGUUCGAGUACUAUUGAЖCUCUCUCCUGAUGAGAAGAUGUUUAGAUAAGUACAAGUUAAGAAAGUAGCAUAUGACUGGAAACUAUAUUCAGUGCACUUUCUCCAAAAGACUACCCAGAAAAAUAGACUUAUUUUCAAAUACCAGUUAUCAAGAUAUAUUAAAUAGCUGUAUUGUUUAGAAUCUUAAUAUGGUAUAAAUUAGCAUAUGUAUUCACAAUAUUCAUUCAGACAUCAUUCCCAGACAGCAGGGAUUUAUUUAAAUGUUAGCUGUCUGAGUUUUUAAAUAGCUAAUACGACCGGGUACAGUGGUUCAUGCCUGUAAUCCCAGAACUUCGGGAGGCCGAGACAGGCAGAUCACGAGGUCAACAGAUUGAGACCAUCCUGGCAAACAUGGUGAAACCCCAUCUCUAGUAAAAAUACAAAAAUUAGCUGGGCGUGGCGGUGCGCAACUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCUCUUGAACCUGGCAAGUGUAGGUUGCAGUGAGCUGAGAUUGAGCAACUGUACUCCAGCUUGGCGACAGAGCAAGACCCCCUCUCAAAAAUAAAUAAAAUAAAGUAAAAUAAAUAUAAAUAAUUGUGGCCGGGUGCAAUGGCUCAUGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGAUGGGAGGAUCACUUGAAGCCAGGAGUUUAAAACCAGAAUGAUCAACAGAGUGAGACCCCUGUCUAUAUAUUUUUUUAAUUUAAAAAAUAAAAGAAUAAAAUUGUGUAGCUCAGUAUAGUAUCAAGAUUAAUCUGCCUACUCACAUUUCUACACUPUAUAAAAAUGUAAUAAAAGAAAAUUAUCUUUC
Sequence (SHORT NAMES ENCODING)	AGCUCUCCCCGACCGCAGGGCUGGGGCGACCAGAAAAGCCAGACUAAUCAGGACGAGUUCGGGCGUGGAAUUGGGCCUGAAGCCCUCAUGCCCAGCCAGGCCUGAAUGCCCCAGACCCCACCGUCACCCCCGUGGCCUGGAUGGAGCAGGGGACGGCCGGCGAAGGCGCGGGGUGGAAGGGGAGCGGCGACGAAGGCGCGAGGAGCUGACUGGGAAUCCCCAAGCUACCCGAGGCAAGACACUGAACUUGAGUCGCACUUUUCAUGCCUGUAGAAAUGAGAAUGACAGCUGUGAUAAAAAAAAAAUUCAUCUGGGCGGUAUCUGGAACUUGUAAGGCGAAAGAGAAUGAAAGACGUAGAUAACCUCAAAAGUAUAAAAGAAGAAUGAGUCUCUCUCUGUCGCCAGGCUGGAGUGCAGUGGCAUGAUCUCGGCUCACUGCAACCUCCGCCUCCCAGGUUCAAGCGAUUCUUCUGCCUCAGCCUCCUGAGUAGCUGGGACUACAGGGUUUGUGAAACAGGAUCUGAUAAUCAACCUCUUGGUAAUAAUCAACAAUCAAAUUGUGAAUAUUUUGUUGAUAGCCUUUUUGAGGAAGCUCAGAAGGUUAGUUCCAAAUGUGUGUCUCCCGCUGAACAGAAGAAACAGGUAGAUGUAAAUAUAAAAUUAUGGAAAAACGGAUUCACCGUCAACGACGAUUUCAGAAGUUAUUCCGAUGGUGCCAGUCAGCAGUUUUUGAACUCCAUCAAAAAGGGGGAAUUACCUUCAGAAUUACAGGGAAUUUUUGAUAAAGAAGAGGUGGACGUUAAAGUUGAAGACAAGAAAAAUGAAAUAUGUUUGUCUACGAAGCCUGUGUUCCAGCCCUUUUCAGGACAGGGUCACAGACUAGGAAGUGCCACACCAAAAAUUGUUUCUAAAGCAAAGAAUAUUGAAGUUGAAAAUAAAAAUAAUUUGUCUGCUGUUCCACUGAACAACUUGGAACCCAUUACUAAUAUACAGAUCUGGUUGGCCAAUGGAAAAAGGAUUGUCCAGAAAUUUAACAUUACUCAUAGAGUAAGCCAUAUCAAAGACUUCAUUGAAAAAUACCAAGGAUCUCAAAGAAGUCCUCCGUUUUCCCUGGCAACAGCUCUUCCUGUCCUCAGGUUGCUAGAUGAGACACUCACACUGGAAGAAGCAGAUUUACAGAAUGCUGUCAUCAUUCAGAGm6ACUCCAAAAAACUGCAUCUUUUAGAGAm6ACUUUCAGAGCACUGAUUUUUGAUAGm6ACUAAGUGGAAAAUUUGCAGAGAAAUGAUGGUUGUAAGUGGm6ACAUGCAAACCAAAAUUGGGGAUUGGAGAAGUCAGACUCACUAGm6ACUUUUGGUUCGAGUACUAUUGAm6ACUCUCUCCUGAUGAGAAGAUGUUUAGAUAAGUACAAGUUAAGAAAGUAGCAUAUGACUGGAAACUAUAUUCAGUGCACUUUCUCCAAAAGACUACCCAGAAAAAUAGACUUAUUUUCAAAUACCAGUUAUCAAGAUAUAUUAAAUAGCUGUAUUGUUUAGAAUCUUAAUAUGGUAUAAAUUAGCAUAUGUAUUCACAAUAUUCAUUCAGACAUCAUUCCCAGACAGCAGGGAUUUAUUUAAAUGUUAGCUGUCUGAGUUUUUAAAUAGCUAAUACGACCGGGUACAGUGGUUCAUGCCUGUAAUCCCAGAACUUCGGGAGGCCGAGACAGGCAGAUCACGAGGUCAACAGAUUGAGACCAUCCUGGCAAACAUGGUGAAACCCCAUCUCUAGUAAAAAUACAAAAAUUAGCUGGGCGUGGCGGUGCGCAACUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCUCUUGAACCUGGCAAGUGUAGGUUGCAGUGAGCUGAGAUUGAGCAACUGUACUCCAGCUUGGCGACAGAGCAAGACCCCCUCUCAAAAAUAAAUAAAAUAAAGUAAAAUAAAUAUAAAUAAUUGUGGCCGGGUGCAAUGGCUCAUGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGAUGGGAGGAUCACUUGAAGCCAGGAGUUUAAAACCAGAAUGAUCAACAGAGUGAGACCCCUGUCUAUAUAUUUUUUUAAUUUAAAAAAUAAAAGAAUAAAAUUGUGUAGCUCAGUAUAGUAUCAAGAUUAAUCUGCCUACUCACAUUUCUACACUYUAUAAAAAUGUAAUAAAAGAAAAUUAUCUUUC
Sequence (MODOMICS CODE ENCODING)	AGCUCUCCCCGACCGCAGGGCUGGGGCGACCAGAAAAGCCAGACUAAUCAGGACGAGUUCGGGCGUGGAAUUGGGCCUGAAGCCCUCAUGCCCAGCCAGGCCUGAAUGCCCCAGACCCCACCGUCACCCCCGUGGCCUGGAUGGAGCAGGGGACGGCCGGCGAAGGCGCGGGGUGGAAGGGGAGCGGCGACGAAGGCGCGAGGAGCUGACUGGGAAUCCCCAAGCUACCCGAGGCAAGACACUGAACUUGAGUCGCACUUUUCAUGCCUGUAGAAAUGAGAAUGACAGCUGUGAUAAAAAAAAAAUUCAUCUGGGCGGUAUCUGGAACUUGUAAGGCGAAAGAGAAUGAAAGACGUAGAUAACCUCAAAAGUAUAAAAGAAGAAUGAGUCUCUCUCUGUCGCCAGGCUGGAGUGCAGUGGCAUGAUCUCGGCUCACUGCAACCUCCGCCUCCCAGGUUCAAGCGAUUCUUCUGCCUCAGCCUCCUGAGUAGCUGGGACUACAGGGUUUGUGAAACAGGAUCUGAUAAUCAACCUCUUGGUAAUAAUCAACAAUCAAAUUGUGAAUAUUUUGUUGAUAGCCUUUUUGAGGAAGCUCAGAAGGUUAGUUCCAAAUGUGUGUCUCCCGCUGAACAGAAGAAACAGGUAGAUGUAAAUAUAAAAUUAUGGAAAAACGGAUUCACCGUCAACGACGAUUUCAGAAGUUAUUCCGAUGGUGCCAGUCAGCAGUUUUUGAACUCCAUCAAAAAGGGGGAAUUACCUUCAGAAUUACAGGGAAUUUUUGAUAAAGAAGAGGUGGACGUUAAAGUUGAAGACAAGAAAAAUGAAAUAUGUUUGUCUACGAAGCCUGUGUUCCAGCCCUUUUCAGGACAGGGUCACAGACUAGGAAGUGCCACACCAAAAAUUGUUUCUAAAGCAAAGAAUAUUGAAGUUGAAAAUAAAAAUAAUUUGUCUGCUGUUCCACUGAACAACUUGGAACCCAUUACUAAUAUACAGAUCUGGUUGGCCAAUGGAAAAAGGAUUGUCCAGAAAUUUAACAUUACUCAUAGAGUAAGCCAUAUCAAAGACUUCAUUGAAAAAUACCAAGGAUCUCAAAGAAGUCCUCCGUUUUCCCUGGCAACAGCUCUUCCUGUCCUCAGGUUGCUAGAUGAGACACUCACACUGGAAGAAGCAGAUUUACAGAAUGCUGUCAUCAUUCAGAG2000000006ACUCCAAAAAACUGCAUCUUUUAGAGA2000000006ACUUUCAGAGCACUGAUUUUUGAUAG2000000006ACUAAGUGGAAAAUUUGCAGAGAAAUGAUGGUUGUAAGUGG2000000006ACAUGCAAACCAAAAUUGGGGAUUGGAGAAGUCAGACUCACUAG2000000006ACUUUUGGUUCGAGUACUAUUGA2000000006ACUCUCUCCUGAUGAGAAGAUGUUUAGAUAAGUACAAGUUAAGAAAGUAGCAUAUGACUGGAAACUAUAUUCAGUGCACUUUCUCCAAAAGACUACCCAGAAAAAUAGACUUAUUUUCAAAUACCAGUUAUCAAGAUAUAUUAAAUAGCUGUAUUGUUUAGAAUCUUAAUAUGGUAUAAAUUAGCAUAUGUAUUCACAAUAUUCAUUCAGACAUCAUUCCCAGACAGCAGGGAUUUAUUUAAAUGUUAGCUGUCUGAGUUUUUAAAUAGCUAAUACGACCGGGUACAGUGGUUCAUGCCUGUAAUCCCAGAACUUCGGGAGGCCGAGACAGGCAGAUCACGAGGUCAACAGAUUGAGACCAUCCUGGCAAACAUGGUGAAACCCCAUCUCUAGUAAAAAUACAAAAAUUAGCUGGGCGUGGCGGUGCGCAACUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCUCUUGAACCUGGCAAGUGUAGGUUGCAGUGAGCUGAGAUUGAGCAACUGUACUCCAGCUUGGCGACAGAGCAAGACCCCCUCUCAAAAAUAAAUAAAAUAAAGUAAAAUAAAUAUAAAUAAUUGUGGCCGGGUGCAAUGGCUCAUGCCUGUAAUCCCAGCACUUUGGGAGGCUGAGAUGGGAGGAUCACUUGAAGCCAGGAGUUUAAAACCAGAAUGAUCAACAGAGUGAGACCCCUGUCUAUAUAUUUUUUUAAUUUAAAAAAUAAAAGAAUAAAAUUGUGUAGCUCAGUAUAGUAUCAAGAUUAAUCUGCCUACUCACAUUUCUACACU2000000009UUAUAAAAAUGUAAUAAAAGAAAAUUAUCUUUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1200	1227	1253	1294	1338	1361	2163
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	2:23999825:+	2:23999852:+	2:23999878:+	2:23999919:+	2:23999963:+	2:23999986:+	2:24000788:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BkoLW2CBToyL BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V msuJfBpJvM5H VyCX26p5UBRL BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 LZJKems7W2wi BtsJQJ3DteUq Yfn77uLS5tv8	6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa XUkp6ghERQML BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8