General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000700231
Gene ID:	ENSG00000153234
Gene Name:	NR4A2
Sequence (UNICHARACTER ENCODING)	AGUCCGCCCGGCGGCUCGCGCACGGCUCCGCGGUCCCUUUUGCCUGUCCAGCCGGCCGCCUGUCCCUGCUCCCUCCCUCCGUGAGGUGUCCGGGUUCCCUUCGCCCAGCUCUCCCACCCCUACCCGACCCCGGCGCCCGGGCUCCCAGAGGGAACUGCACUUCGGCAGAGUUGAAUGAAUGAAGACAGACGCGGAGAACUCCUAAGGAGGAGAUUGGACAGGCUGGACUCCCCAUUGCUUUUCUAAAAAUCUUGGAAACUUUGUCCUUCAUUGAAUUACGACACUGUCCACCUUUAAUUUCCUCGAAAACGCCUGUAACUCGGCUGAAGCCAUGCCUUGUGUUCAGGCGCAGUAUGGGUCCUCGCCUCAAGGAGCCAGCCCCGCUUCUCAGAGCUACAGUUACCACUCUUCGGGAGAAUACAGCUCCGAUUUCUUAACUCCAGAGUUUGUCAAGUUUAGCAUGGЖCCUCACCAACACUGAAAUCACUGCCACCACUUCUCUCCCCAGCUUCAGUACCUUUAUGGЖCAACUACAGCACAGGCUACGACGUCAAGCCACCUUGCUUGUACCAAAUGCCCCUGUCCGGЖCAGCAGUCCUCCAUUAAGGUAGAAGACAUUCAGAUGCACAACUACCAGCAACACAGCCACCUGCCCCCCCAGUCUGAGGAGAUGAUGCCGCACUCCGGGUCGGUUUACUACAAGCCCUCCUCGCCCCCGACGCCCACCACCCCGGGCUUCCAGGUGCAGCACAGCCCCAUGUGGGACGACCCGGGAUCUCUCCACAACUUCCACCAGAACUACGUGGCCACUACGCACAUGAUCGAGCAGAGGAAAACGCCAGUCUCCCGCCUCUCCCUCUUCUCCUUUAAGCAAUCGCCCCCUGGCACCCCGGUGUCUAGUUGCCAGAUGCGCUUCGACGGGCCCCUGCACGUCCCCAUGAЖCCCGGAGCCCGCCGGCAGCCACCACGUGGUGGACGGGCAGACCUUCGCUGUGCCCAACCCCAUUCGCAAGCCCGCGUCCAUGGGCUUCCCGGGCCUGCAGAUCGGCCACGCGUCUCAGCUGCUCGACACGCAGGUGCCCUCACCGCCGUCGCGGGGCUCCCCCUCCAACGAGGGGCUGUGCGCUGUGUGUGGGGACAACGCGGCCUGCCAACACUACGGCGUGCGCACCUGUGAGGGCUGCAAAGGCUUCUUUAAGCGCACAGUGCAAAAAAAUGCAAAAUACGUGUGUUUAGCAAAUAAAAACUGCCCAGUGGACAAGCGUCGCCGGAAUCGCUGUCAGUACUGCCGAUUUCAGAAGUGCCUGGCUGUUGGGAUGGUCAAAGAAGUGGUUCGCACAGACAGUUUAAAAGGCCGGAGAGGUCGUUUGCCCUCGAAACCGAAGAGCCCACAGGAGCCCUCUCCCCCUUCGCCCCCGUUCCAGGCGAACCCUGACUAUCAAAUGAGUGGAGAUGACACCCAGCAUAUCCAGCAAUUCUAUGAUCUCCUGACUGGCUCCAUGGAGAUCAUCCGGGGCUGGGCAGAGAAGAUCCCUGGCUUCGCAGACCUGCCCAAAGCCGACCAAGACCUGCUUUUUGAAUCAGCUUUCUUAGAACUGUUUGUCCUUCGAUUAGCAUACAGGUCCAACCCAGUGGAGGGUAAACUCAUCUUUUGCAAUGGGGUGGUCUUGCACAGGUUGCAAUGCGUUCGUGGCUUUGGGGAAUGGAUUGAUUCCAUUGUUGAAUUCUCCUCCAACUUGCAGAAUAUGAACAUCGACAUUUCUGCCUUCUCCUGCAUUGCUGCCCUGGCUAUGGUCACAGAGAGACACGGGCUCAAGGAACCCAAGAGAGUGGAAGAACUGCAAAACAAGAUUGUAAAUUGUCUCAAAGACCACGUGЖCUUUCAACAAUGGGGGGUUGAACCGCCCCAAUUAUUUGUCCAAЖCUGUUGGGGAAGCUCCCAGAЖCUUCGUACCCUUUGCACACAGGGGCUACAGCGCAUUUUCUACCUGAAAUUGGAAGACUUGGUGCCACCGCCAGCAAUAAUUGACAAЖCUUUUCCUGGЖCACUUUACCUUUCUAAGACCUCCUCCCAAGCACUUCAAAGGAЖCUGGAAUGAUAAUGGAAACUGUCAAGAGGGGGCAAGUCACAUGGGCAGAGAUAGCCGUGUGAGCAGUCUCAGCUCAAGCUGCCCCCCAUUUCUGUAACCCUCCUAGCCCCCUUGAUCCCUAAAGAAAACAAACAAACAAACAAAAЖCUGUUGCUAUUUCCUAACCUGCAGGCAGAACCUGAAAGGGCAUUUUGGCUCCGGGGCAUCCUGGAUUUAGAACAUGGЖCUACACACAAUACAGUGGUAUAAACUUUUUAUUCUCAGUUUAAAAAUCAGUUUGUUGUUCAGAAGAAAGAUUGCUAUAAUGUAUAAUGGGAAAUGUUUGGCCAUGCUUGGUUGUUGCAGUUCAGACAAAUGUAACACACAC
Sequence (SHORT NAMES ENCODING)	AGUCCGCCCGGCGGCUCGCGCACGGCUCCGCGGUCCCUUUUGCCUGUCCAGCCGGCCGCCUGUCCCUGCUCCCUCCCUCCGUGAGGUGUCCGGGUUCCCUUCGCCCAGCUCUCCCACCCCUACCCGACCCCGGCGCCCGGGCUCCCAGAGGGAACUGCACUUCGGCAGAGUUGAAUGAAUGAAGACAGACGCGGAGAACUCCUAAGGAGGAGAUUGGACAGGCUGGACUCCCCAUUGCUUUUCUAAAAAUCUUGGAAACUUUGUCCUUCAUUGAAUUACGACACUGUCCACCUUUAAUUUCCUCGAAAACGCCUGUAACUCGGCUGAAGCCAUGCCUUGUGUUCAGGCGCAGUAUGGGUCCUCGCCUCAAGGAGCCAGCCCCGCUUCUCAGAGCUACAGUUACCACUCUUCGGGAGAAUACAGCUCCGAUUUCUUAACUCCAGAGUUUGUCAAGUUUAGCAUGGm6ACCUCACCAACACUGAAAUCACUGCCACCACUUCUCUCCCCAGCUUCAGUACCUUUAUGGm6ACAACUACAGCACAGGCUACGACGUCAAGCCACCUUGCUUGUACCAAAUGCCCCUGUCCGGm6ACAGCAGUCCUCCAUUAAGGUAGAAGACAUUCAGAUGCACAACUACCAGCAACACAGCCACCUGCCCCCCCAGUCUGAGGAGAUGAUGCCGCACUCCGGGUCGGUUUACUACAAGCCCUCCUCGCCCCCGACGCCCACCACCCCGGGCUUCCAGGUGCAGCACAGCCCCAUGUGGGACGACCCGGGAUCUCUCCACAACUUCCACCAGAACUACGUGGCCACUACGCACAUGAUCGAGCAGAGGAAAACGCCAGUCUCCCGCCUCUCCCUCUUCUCCUUUAAGCAAUCGCCCCCUGGCACCCCGGUGUCUAGUUGCCAGAUGCGCUUCGACGGGCCCCUGCACGUCCCCAUGAm6ACCCGGAGCCCGCCGGCAGCCACCACGUGGUGGACGGGCAGACCUUCGCUGUGCCCAACCCCAUUCGCAAGCCCGCGUCCAUGGGCUUCCCGGGCCUGCAGAUCGGCCACGCGUCUCAGCUGCUCGACACGCAGGUGCCCUCACCGCCGUCGCGGGGCUCCCCCUCCAACGAGGGGCUGUGCGCUGUGUGUGGGGACAACGCGGCCUGCCAACACUACGGCGUGCGCACCUGUGAGGGCUGCAAAGGCUUCUUUAAGCGCACAGUGCAAAAAAAUGCAAAAUACGUGUGUUUAGCAAAUAAAAACUGCCCAGUGGACAAGCGUCGCCGGAAUCGCUGUCAGUACUGCCGAUUUCAGAAGUGCCUGGCUGUUGGGAUGGUCAAAGAAGUGGUUCGCACAGACAGUUUAAAAGGCCGGAGAGGUCGUUUGCCCUCGAAACCGAAGAGCCCACAGGAGCCCUCUCCCCCUUCGCCCCCGUUCCAGGCGAACCCUGACUAUCAAAUGAGUGGAGAUGACACCCAGCAUAUCCAGCAAUUCUAUGAUCUCCUGACUGGCUCCAUGGAGAUCAUCCGGGGCUGGGCAGAGAAGAUCCCUGGCUUCGCAGACCUGCCCAAAGCCGACCAAGACCUGCUUUUUGAAUCAGCUUUCUUAGAACUGUUUGUCCUUCGAUUAGCAUACAGGUCCAACCCAGUGGAGGGUAAACUCAUCUUUUGCAAUGGGGUGGUCUUGCACAGGUUGCAAUGCGUUCGUGGCUUUGGGGAAUGGAUUGAUUCCAUUGUUGAAUUCUCCUCCAACUUGCAGAAUAUGAACAUCGACAUUUCUGCCUUCUCCUGCAUUGCUGCCCUGGCUAUGGUCACAGAGAGACACGGGCUCAAGGAACCCAAGAGAGUGGAAGAACUGCAAAACAAGAUUGUAAAUUGUCUCAAAGACCACGUGm6ACUUUCAACAAUGGGGGGUUGAACCGCCCCAAUUAUUUGUCCAAm6ACUGUUGGGGAAGCUCCCAGAm6ACUUCGUACCCUUUGCACACAGGGGCUACAGCGCAUUUUCUACCUGAAAUUGGAAGACUUGGUGCCACCGCCAGCAAUAAUUGACAAm6ACUUUUCCUGGm6ACACUUUACCUUUCUAAGACCUCCUCCCAAGCACUUCAAAGGAm6ACUGGAAUGAUAAUGGAAACUGUCAAGAGGGGGCAAGUCACAUGGGCAGAGAUAGCCGUGUGAGCAGUCUCAGCUCAAGCUGCCCCCCAUUUCUGUAACCCUCCUAGCCCCCUUGAUCCCUAAAGAAAACAAACAAACAAACAAAAm6ACUGUUGCUAUUUCCUAACCUGCAGGCAGAACCUGAAAGGGCAUUUUGGCUCCGGGGCAUCCUGGAUUUAGAACAUGGm6ACUACACACAAUACAGUGGUAUAAACUUUUUAUUCUCAGUUUAAAAAUCAGUUUGUUGUUCAGAAGAAAGAUUGCUAUAAUGUAUAAUGGGAAAUGUUUGGCCAUGCUUGGUUGUUGCAGUUCAGACAAAUGUAACACACAC
Sequence (MODOMICS CODE ENCODING)	AGUCCGCCCGGCGGCUCGCGCACGGCUCCGCGGUCCCUUUUGCCUGUCCAGCCGGCCGCCUGUCCCUGCUCCCUCCCUCCGUGAGGUGUCCGGGUUCCCUUCGCCCAGCUCUCCCACCCCUACCCGACCCCGGCGCCCGGGCUCCCAGAGGGAACUGCACUUCGGCAGAGUUGAAUGAAUGAAGACAGACGCGGAGAACUCCUAAGGAGGAGAUUGGACAGGCUGGACUCCCCAUUGCUUUUCUAAAAAUCUUGGAAACUUUGUCCUUCAUUGAAUUACGACACUGUCCACCUUUAAUUUCCUCGAAAACGCCUGUAACUCGGCUGAAGCCAUGCCUUGUGUUCAGGCGCAGUAUGGGUCCUCGCCUCAAGGAGCCAGCCCCGCUUCUCAGAGCUACAGUUACCACUCUUCGGGAGAAUACAGCUCCGAUUUCUUAACUCCAGAGUUUGUCAAGUUUAGCAUGG2000000006ACCUCACCAACACUGAAAUCACUGCCACCACUUCUCUCCCCAGCUUCAGUACCUUUAUGG2000000006ACAACUACAGCACAGGCUACGACGUCAAGCCACCUUGCUUGUACCAAAUGCCCCUGUCCGG2000000006ACAGCAGUCCUCCAUUAAGGUAGAAGACAUUCAGAUGCACAACUACCAGCAACACAGCCACCUGCCCCCCCAGUCUGAGGAGAUGAUGCCGCACUCCGGGUCGGUUUACUACAAGCCCUCCUCGCCCCCGACGCCCACCACCCCGGGCUUCCAGGUGCAGCACAGCCCCAUGUGGGACGACCCGGGAUCUCUCCACAACUUCCACCAGAACUACGUGGCCACUACGCACAUGAUCGAGCAGAGGAAAACGCCAGUCUCCCGCCUCUCCCUCUUCUCCUUUAAGCAAUCGCCCCCUGGCACCCCGGUGUCUAGUUGCCAGAUGCGCUUCGACGGGCCCCUGCACGUCCCCAUGA2000000006ACCCGGAGCCCGCCGGCAGCCACCACGUGGUGGACGGGCAGACCUUCGCUGUGCCCAACCCCAUUCGCAAGCCCGCGUCCAUGGGCUUCCCGGGCCUGCAGAUCGGCCACGCGUCUCAGCUGCUCGACACGCAGGUGCCCUCACCGCCGUCGCGGGGCUCCCCCUCCAACGAGGGGCUGUGCGCUGUGUGUGGGGACAACGCGGCCUGCCAACACUACGGCGUGCGCACCUGUGAGGGCUGCAAAGGCUUCUUUAAGCGCACAGUGCAAAAAAAUGCAAAAUACGUGUGUUUAGCAAAUAAAAACUGCCCAGUGGACAAGCGUCGCCGGAAUCGCUGUCAGUACUGCCGAUUUCAGAAGUGCCUGGCUGUUGGGAUGGUCAAAGAAGUGGUUCGCACAGACAGUUUAAAAGGCCGGAGAGGUCGUUUGCCCUCGAAACCGAAGAGCCCACAGGAGCCCUCUCCCCCUUCGCCCCCGUUCCAGGCGAACCCUGACUAUCAAAUGAGUGGAGAUGACACCCAGCAUAUCCAGCAAUUCUAUGAUCUCCUGACUGGCUCCAUGGAGAUCAUCCGGGGCUGGGCAGAGAAGAUCCCUGGCUUCGCAGACCUGCCCAAAGCCGACCAAGACCUGCUUUUUGAAUCAGCUUUCUUAGAACUGUUUGUCCUUCGAUUAGCAUACAGGUCCAACCCAGUGGAGGGUAAACUCAUCUUUUGCAAUGGGGUGGUCUUGCACAGGUUGCAAUGCGUUCGUGGCUUUGGGGAAUGGAUUGAUUCCAUUGUUGAAUUCUCCUCCAACUUGCAGAAUAUGAACAUCGACAUUUCUGCCUUCUCCUGCAUUGCUGCCCUGGCUAUGGUCACAGAGAGACACGGGCUCAAGGAACCCAAGAGAGUGGAAGAACUGCAAAACAAGAUUGUAAAUUGUCUCAAAGACCACGUG2000000006ACUUUCAACAAUGGGGGGUUGAACCGCCCCAAUUAUUUGUCCAA2000000006ACUGUUGGGGAAGCUCCCAGA2000000006ACUUCGUACCCUUUGCACACAGGGGCUACAGCGCAUUUUCUACCUGAAAUUGGAAGACUUGGUGCCACCGCCAGCAAUAAUUGACAA2000000006ACUUUUCCUGG2000000006ACACUUUACCUUUCUAAGACCUCCUCCCAAGCACUUCAAAGGA2000000006ACUGGAAUGAUAAUGGAAACUGUCAAGAGGGGGCAAGUCACAUGGGCAGAGAUAGCCGUGUGAGCAGUCUCAGCUCAAGCUGCCCCCCAUUUCUGUAACCCUCCUAGCCCCCUUGAUCCCUAAAGAAAACAAACAAACAAACAAAA2000000006ACUGUUGCUAUUUCCUAACCUGCAGGCAGAACCUGAAAGGGCAUUUUGGCUCCGGGGCAUCCUGGAUUUAGAACAUGG2000000006ACUACACACAAUACAGUGGUAUAAACUUUUUAUUCUCAGUUUAAAAAUCAGUUUGUUGUUCAGAAGAAAGAUUGCUAUAAUGUAUAAUGGGAAAUGUUUGGCCAUGCUUGGUUGUUGCAGUUCAGACAAAUGUAACACACAC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	465	525	586	939	1874	1918	1939	2026	2037	2080	2226	2304
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	2:156330053:-	2:156329993:-	2:156329932:-	2:156329579:-	2:156325923:-	2:156325879:-	2:156325858:-	2:156325771:-	2:156325760:-	2:156325717:-	2:156325571:-	2:156325493:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp aivdrAsbdKEU gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn Lny8GcCeVGc9	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU gZuvgwMuBfgh msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn D6ncpa2PPWj3 Lny8GcCeVGc9	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB Lny8GcCeVGc9 UKen6WEino9G	Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn VL7zkHvkfkoB aJksAshEgQ8U 93arJtwJmuS9 KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G