Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000409736
Gene ID: ENSG00000132330
Gene Name: SCLY
Sequence (UNICHARACTER ENCODING) AUGCCCGGCAGCAGUGGGGCGGGGAUGGAGGCGGCCGUGGCGCCGGGGAGGGAUGCGCCGGCACCCGCGGCGAGUCAGCCCAGCGGCUGCGGGAAACACAACUCGCCGGAGAGGAAAGUUUAUAUGGACUAUAAUGCAACGACUCCCCUGGAGCCAGAAGUUAUCCAGGCCAUGACCAAGGCCAUGUGGGAAGCCUGGGGAAAUCCCAGCAGCCCGUAUUCAGCAGGAAGAAAGGCCAAGGAUAUUAUAAAUGCAGCUCGGGAAAGCCUCGCGAAGAUGAUAGGGGGGAAACCUCAAGAUAUAAUCUUCACUUCCGGGGGCACUGAGUCAAAUAAUUUAGUAAUCCAUUCUGUGGUGAAACAUUUCCACGCAAACCAGACCUCAAAGGGACACACAGGUGGGCACCACAGCCCAGUGAAGGGGGCCAAGCCCCAUUUCAUUACUUCCUCGGUGGAACACGACUCCAPCCGGCUGCCCCUGGAGCACCUGGUGGAAGAACAAGUGGCAGCGGUCACCUUUGUCCCGGUGUCCAAGGUGAGCGGGCAGGCAGAGGUGGACGACAPCCUCGCGGCAGUCCGCCCGACCACACGCCUCGUGACCAUCAUGCUGGCCAACAAUGAGACUGGCAUUGUCAUGCCUGUCCCUGAAAUCAGUCAGCGCAUUAAAGCCCUGAЖCCAGGAACGGGUGGCAGCUGGGCUACCUCCCAPCCUCGUGCACACGGAUGCUGCACAGGCCUUGGGGAAGCAGCGCGUGGAUGUGGAGGACCUGGGCGUGGACUUCCUUACAAUCGUGGGGCACAAGUUUUAUGGUCCCAGGAUUGGCGCACUPUAUAUACGAGGACUUGGUGAAUUUACCCCUCUCUACCCUAUGCUAUUUGGAGGUGGACAAGAACGGAAUUUCAGGCCAGGGACAGAGAACACCCCAAUGAUUGCUGGCCUUGGGAAGGUGAGCCCUGGUGAGCUUGAGGAGAUGAGUUGAUUGCUUUGUCAUCAGUGUCCCCAGCGGCUCUAGUAGGAAUCUGGGGCUUUAGGGAGAUCAUAUUCGUGAUCUCAUAAGCGGЖCUGACAAGAAAAAGCCUGGAAUCUGAUUUAUCAACCUGGAGAGCUGUACUUUUUCAGAUCUGUGGAUUAGUGGCACUUGUUUAGCAUUUAAAAGGGAAAAACUCCUUGUCUGUGUCUCUUCUGACAUGAGAAACAGUGAUACUGUUACAGCAGAGGUGAAGUGUCAAGCUGCAGGUUCACCAUUCCCAAAGGCGUCGGCAGCCCCCGCACCAUCGACGUUCUGUCCCCGAUUGGUCUGUGGGGUGGCCAAUCCAGCACCUGCCACCAGCCCUCCACUGGGGCCUGUCCUGCUUCUGCGACAGUAACCAGGCUCAGGUUUUGCCGUGCGAAGGCAGAGGUACUGGUUACACCUCGGCGUCUGCAGGCUGCUCCCUCACUGUGCGGCCUCUGGUCAAAGGCCACCACCUUCAAGCAACCCUCCAUGAACCACAGCUACAUUGGUUCCCCCAUGUCCCCUGCUGUCACCCUCUAUCCCUGACACUGCUUUAUUUCCCCUAUCUGAUGUUUCUCUGUAGUGUGUUCAGAUGUAUGCCCCACCUUCUGCUUCCCCGAGAGCAGGGGCUUGGCCAUGUCGGCCUCAGUAUCCCCAGUACAGAGAAAGGGCUUAGCGCCCAGGAGGCCGGGCCUUGGGAAGAGUAUGAAUGGAUUCCCUGUUACUUAGAAUAUUCAAAAUUAUAUUAUUAACAGUGAUAACUGUGGCUACAUUUACUAGAA
Sequence (SHORT NAMES ENCODING) AUGCCCGGCAGCAGUGGGGCGGGGAUGGAGGCGGCCGUGGCGCCGGGGAGGGAUGCGCCGGCACCCGCGGCGAGUCAGCCCAGCGGCUGCGGGAAACACAACUCGCCGGAGAGGAAAGUUUAUAUGGACUAUAAUGCAACGACUCCCCUGGAGCCAGAAGUUAUCCAGGCCAUGACCAAGGCCAUGUGGGAAGCCUGGGGAAAUCCCAGCAGCCCGUAUUCAGCAGGAAGAAAGGCCAAGGAUAUUAUAAAUGCAGCUCGGGAAAGCCUCGCGAAGAUGAUAGGGGGGAAACCUCAAGAUAUAAUCUUCACUUCCGGGGGCACUGAGUCAAAUAAUUUAGUAAUCCAUUCUGUGGUGAAACAUUUCCACGCAAACCAGACCUCAAAGGGACACACAGGUGGGCACCACAGCCCAGUGAAGGGGGCCAAGCCCCAUUUCAUUACUUCCUCGGUGGAACACGACUCCAYCCGGCUGCCCCUGGAGCACCUGGUGGAAGAACAAGUGGCAGCGGUCACCUUUGUCCCGGUGUCCAAGGUGAGCGGGCAGGCAGAGGUGGACGACAYCCUCGCGGCAGUCCGCCCGACCACACGCCUCGUGACCAUCAUGCUGGCCAACAAUGAGACUGGCAUUGUCAUGCCUGUCCCUGAAAUCAGUCAGCGCAUUAAAGCCCUGAm6ACCAGGAACGGGUGGCAGCUGGGCUACCUCCCAYCCUCGUGCACACGGAUGCUGCACAGGCCUUGGGGAAGCAGCGCGUGGAUGUGGAGGACCUGGGCGUGGACUUCCUUACAAUCGUGGGGCACAAGUUUUAUGGUCCCAGGAUUGGCGCACUYUAUAUACGAGGACUUGGUGAAUUUACCCCUCUCUACCCUAUGCUAUUUGGAGGUGGACAAGAACGGAAUUUCAGGCCAGGGACAGAGAACACCCCAAUGAUUGCUGGCCUUGGGAAGGUGAGCCCUGGUGAGCUUGAGGAGAUGAGUUGAUUGCUUUGUCAUCAGUGUCCCCAGCGGCUCUAGUAGGAAUCUGGGGCUUUAGGGAGAUCAUAUUCGUGAUCUCAUAAGCGGm6ACUGACAAGAAAAAGCCUGGAAUCUGAUUUAUCAACCUGGAGAGCUGUACUUUUUCAGAUCUGUGGAUUAGUGGCACUUGUUUAGCAUUUAAAAGGGAAAAACUCCUUGUCUGUGUCUCUUCUGACAUGAGAAACAGUGAUACUGUUACAGCAGAGGUGAAGUGUCAAGCUGCAGGUUCACCAUUCCCAAAGGCGUCGGCAGCCCCCGCACCAUCGACGUUCUGUCCCCGAUUGGUCUGUGGGGUGGCCAAUCCAGCACCUGCCACCAGCCCUCCACUGGGGCCUGUCCUGCUUCUGCGACAGUAACCAGGCUCAGGUUUUGCCGUGCGAAGGCAGAGGUACUGGUUACACCUCGGCGUCUGCAGGCUGCUCCCUCACUGUGCGGCCUCUGGUCAAAGGCCACCACCUUCAAGCAACCCUCCAUGAACCACAGCUACAUUGGUUCCCCCAUGUCCCCUGCUGUCACCCUCUAUCCCUGACACUGCUUUAUUUCCCCUAUCUGAUGUUUCUCUGUAGUGUGUUCAGAUGUAUGCCCCACCUUCUGCUUCCCCGAGAGCAGGGGCUUGGCCAUGUCGGCCUCAGUAUCCCCAGUACAGAGAAAGGGCUUAGCGCCCAGGAGGCCGGGCCUUGGGAAGAGUAUGAAUGGAUUCCCUGUUACUUAGAAUAUUCAAAAUUAUAUUAUUAACAGUGAUAACUGUGGCUACAUUUACUAGAA
Sequence (MODOMICS CODE ENCODING) AUGCCCGGCAGCAGUGGGGCGGGGAUGGAGGCGGCCGUGGCGCCGGGGAGGGAUGCGCCGGCACCCGCGGCGAGUCAGCCCAGCGGCUGCGGGAAACACAACUCGCCGGAGAGGAAAGUUUAUAUGGACUAUAAUGCAACGACUCCCCUGGAGCCAGAAGUUAUCCAGGCCAUGACCAAGGCCAUGUGGGAAGCCUGGGGAAAUCCCAGCAGCCCGUAUUCAGCAGGAAGAAAGGCCAAGGAUAUUAUAAAUGCAGCUCGGGAAAGCCUCGCGAAGAUGAUAGGGGGGAAACCUCAAGAUAUAAUCUUCACUUCCGGGGGCACUGAGUCAAAUAAUUUAGUAAUCCAUUCUGUGGUGAAACAUUUCCACGCAAACCAGACCUCAAAGGGACACACAGGUGGGCACCACAGCCCAGUGAAGGGGGCCAAGCCCCAUUUCAUUACUUCCUCGGUGGAACACGACUCCA2000000009UCCGGCUGCCCCUGGAGCACCUGGUGGAAGAACAAGUGGCAGCGGUCACCUUUGUCCCGGUGUCCAAGGUGAGCGGGCAGGCAGAGGUGGACGACA2000000009UCCUCGCGGCAGUCCGCCCGACCACACGCCUCGUGACCAUCAUGCUGGCCAACAAUGAGACUGGCAUUGUCAUGCCUGUCCCUGAAAUCAGUCAGCGCAUUAAAGCCCUGA2000000006ACCAGGAACGGGUGGCAGCUGGGCUACCUCCCA2000000009UCCUCGUGCACACGGAUGCUGCACAGGCCUUGGGGAAGCAGCGCGUGGAUGUGGAGGACCUGGGCGUGGACUUCCUUACAAUCGUGGGGCACAAGUUUUAUGGUCCCAGGAUUGGCGCACU2000000009UUAUAUACGAGGACUUGGUGAAUUUACCCCUCUCUACCCUAUGCUAUUUGGAGGUGGACAAGAACGGAAUUUCAGGCCAGGGACAGAGAACACCCCAAUGAUUGCUGGCCUUGGGAAGGUGAGCCCUGGUGAGCUUGAGGAGAUGAGUUGAUUGCUUUGUCAUCAGUGUCCCCAGCGGCUCUAGUAGGAAUCUGGGGCUUUAGGGAGAUCAUAUUCGUGAUCUCAUAAGCGG2000000006ACUGACAAGAAAAAGCCUGGAAUCUGAUUUAUCAACCUGGAGAGCUGUACUUUUUCAGAUCUGUGGAUUAGUGGCACUUGUUUAGCAUUUAAAAGGGAAAAACUCCUUGUCUGUGUCUCUUCUGACAUGAGAAACAGUGAUACUGUUACAGCAGAGGUGAAGUGUCAAGCUGCAGGUUCACCAUUCCCAAAGGCGUCGGCAGCCCCCGCACCAUCGACGUUCUGUCCCCGAUUGGUCUGUGGGGUGGCCAAUCCAGCACCUGCCACCAGCCCUCCACUGGGGCCUGUCCUGCUUCUGCGACAGUAACCAGGCUCAGGUUUUGCCGUGCGAAGGCAGAGGUACUGGUUACACCUCGGCGUCUGCAGGCUGCUCCCUCACUGUGCGGCCUCUGGUCAAAGGCCACCACCUUCAAGCAACCCUCCAUGAACCACAGCUACAUUGGUUCCCCCAUGUCCCCUGCUGUCACCCUCUAUCCCUGACACUGCUUUAUUUCCCCUAUCUGAUGUUUCUCUGUAGUGUGUUCAGAUGUAUGCCCCACCUUCUGCUUCCCCGAGAGCAGGGGCUUGGCCAUGUCGGCCUCAGUAUCCCCAGUACAGAGAAAGGGCUUAGCGCCCAGGAGGCCGGGCCUUGGGAAGAGUAUGAAUGGAUUCCCUGUUACUUAGAAUAUUCAAAAUUAUAUUAUUAACAGUGAUAACUGUGGCUACAUUUACUAGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 467 563 674 707 828 1060
Modification Positions Y Y m6A Y Y m6A
Genomic Coordinates 2:238069436:+ 2:238081763:+ 2:238082082:+ 2:238082115:+ 2:238083274:+ 2:238091369:+
Level of Experimental Evidence 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
93arJtwJmuS9
Lny8GcCeVGc9
BtsJQJ3DteUq