Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000437420
Gene ID: ENSG00000183671
Gene Name: CMKLR2
Sequence (UNICHARACTER ENCODING) AUUAAACCACAAGGAUUCAGACAGAGCCCAGAGCCCUGAAAACUUUGGCCACGCACUUUCCCGCAGCAGCCACAGGCACCGGCAACUUCAGAGAGGUAAUUAGAACUUCGGAAAUCUUAGUGGAAAAGAUGGAGAACUAAGUCCUCCGCAGACUUUCCCACUAAGUAUCCUCAAGAAUCACUUUCUGCAUCGGGCAAAACAGAAUUAGAAGCAAGAAUCUAGACAAGGCUUCGUCCUCAUUUAGAAGCCUUUAAGAAUUCUCUGCUUUAAGUGGAUGAAAACGUCCCUGUAUGGCUGGGUUGCCAUGGUUCCUCGCUGUGACCCCCAGGGCUACUGAGCCUGCCAUAUAAAAGUGGAAUGAGGAAUGCAGCCGUUCUGAACACCACCCUCCAUUUCAUUCUGGAACCGGGAAGGUACACCCAGGCAUGACAAUAGCUUCUCUCCUCACAGAAAUUUAACUGAUUUCUUCAUUCUCCAUUUAGCAAGGUCAUGGAAGAUUUGGAGGAAACAUUAUUUGAAGAAUUUGAAAACUAUUCCUAUGACCUAGACUAUUACUCUCUGGAGUCUGAUUUGGAGGAGAAAGUCCAGCUGGGAGUUGUUCACUGGGUCUCCCUGGUGUUAUAUUGUUUGGCUUUUGUUCUGGGAAUUCCAGGAAAUGCCAUCGUCAUUUGGUUCACGGGGUUCAAGUGGAAGAAGACAGUCACCACUCUGUGGUUCCUCAAUCUAGCCAUUGCGGAUUUCAUUUUUCUUCUCUUUCUGCCCCUGUACAUCUCCUAUGUGGCCAUGAAUUUCCACUGGCCCUUUGGCAUCUGGCUGUGCAAAGCCAAUUCCUUCACUGCCCAGUUGAЖCAUGUUUGCCAGUGUUUUUUUCCUGACAGUGAUCAGCCUGGACCACUAUAUCCACUUGAUCCAUCCUGUCUUAUCUCAUCGGCAUCGAACCCUCAAGAACUCUCUGAUUGUCAUUAUAUUCAUCUGGCUUUUGGCUUCUCUAAUUGGCGGUCCUGCCCUGUACUUCCGGGЖCACUGUGGAGUUCAAUAAUCAUACUCUUUGCUAUAACAAUUUUCAGAAGCAUGAUCCUGACCUCACUUUGAUCAGGCACCAUGUUCUGACUUGGGUGAAAUUUAUCAUUGGCUAUCUCUUCCCUUUGCUAACAAUGAGUAUUUGCUACUUGUGUCUCAUCUUCAAGGUGAAGAAGCGAAGCAUCCUGAUCUCCAGUAGGCAUUUCUGGЖCAAUUCUGGUUGUGGUUGUGGCCUUUGUGGUUUGCUGGЖCUCCUUAUCACCUGUUUAGCAUUUGGGAGCUCACCAUUCACCACAAUAGCUAUUCCCACCAUGUGAUGCAGGCUGGAAUCCCCCUCUCCACUGGUUUGGCAUUCCUCAAUAGUUGCUUGAACCCCAUCCUUUAUGUCCUAAUUAGUAAGAAGUUCCAAGCUCGCUUCCGGUCCUCAGUUGCUGAGAUACUCAAGUACACACUGUGGGAAGUCAGCUGUUCUGGCACAGUGAGUGAACAGCUCAGGAACUCAGAAACCAAGAAUCUGUGUCUCCUGGAAACAGCUCAAUAA
Sequence (SHORT NAMES ENCODING) AUUAAACCACAAGGAUUCAGACAGAGCCCAGAGCCCUGAAAACUUUGGCCACGCACUUUCCCGCAGCAGCCACAGGCACCGGCAACUUCAGAGAGGUAAUUAGAACUUCGGAAAUCUUAGUGGAAAAGAUGGAGAACUAAGUCCUCCGCAGACUUUCCCACUAAGUAUCCUCAAGAAUCACUUUCUGCAUCGGGCAAAACAGAAUUAGAAGCAAGAAUCUAGACAAGGCUUCGUCCUCAUUUAGAAGCCUUUAAGAAUUCUCUGCUUUAAGUGGAUGAAAACGUCCCUGUAUGGCUGGGUUGCCAUGGUUCCUCGCUGUGACCCCCAGGGCUACUGAGCCUGCCAUAUAAAAGUGGAAUGAGGAAUGCAGCCGUUCUGAACACCACCCUCCAUUUCAUUCUGGAACCGGGAAGGUACACCCAGGCAUGACAAUAGCUUCUCUCCUCACAGAAAUUUAACUGAUUUCUUCAUUCUCCAUUUAGCAAGGUCAUGGAAGAUUUGGAGGAAACAUUAUUUGAAGAAUUUGAAAACUAUUCCUAUGACCUAGACUAUUACUCUCUGGAGUCUGAUUUGGAGGAGAAAGUCCAGCUGGGAGUUGUUCACUGGGUCUCCCUGGUGUUAUAUUGUUUGGCUUUUGUUCUGGGAAUUCCAGGAAAUGCCAUCGUCAUUUGGUUCACGGGGUUCAAGUGGAAGAAGACAGUCACCACUCUGUGGUUCCUCAAUCUAGCCAUUGCGGAUUUCAUUUUUCUUCUCUUUCUGCCCCUGUACAUCUCCUAUGUGGCCAUGAAUUUCCACUGGCCCUUUGGCAUCUGGCUGUGCAAAGCCAAUUCCUUCACUGCCCAGUUGAm6ACAUGUUUGCCAGUGUUUUUUUCCUGACAGUGAUCAGCCUGGACCACUAUAUCCACUUGAUCCAUCCUGUCUUAUCUCAUCGGCAUCGAACCCUCAAGAACUCUCUGAUUGUCAUUAUAUUCAUCUGGCUUUUGGCUUCUCUAAUUGGCGGUCCUGCCCUGUACUUCCGGGm6ACACUGUGGAGUUCAAUAAUCAUACUCUUUGCUAUAACAAUUUUCAGAAGCAUGAUCCUGACCUCACUUUGAUCAGGCACCAUGUUCUGACUUGGGUGAAAUUUAUCAUUGGCUAUCUCUUCCCUUUGCUAACAAUGAGUAUUUGCUACUUGUGUCUCAUCUUCAAGGUGAAGAAGCGAAGCAUCCUGAUCUCCAGUAGGCAUUUCUGGm6ACAAUUCUGGUUGUGGUUGUGGCCUUUGUGGUUUGCUGGm6ACUCCUUAUCACCUGUUUAGCAUUUGGGAGCUCACCAUUCACCACAAUAGCUAUUCCCACCAUGUGAUGCAGGCUGGAAUCCCCCUCUCCACUGGUUUGGCAUUCCUCAAUAGUUGCUUGAACCCCAUCCUUUAUGUCCUAAUUAGUAAGAAGUUCCAAGCUCGCUUCCGGUCCUCAGUUGCUGAGAUACUCAAGUACACACUGUGGGAAGUCAGCUGUUCUGGCACAGUGAGUGAACAGCUCAGGAACUCAGAAACCAAGAAUCUGUGUCUCCUGGAAACAGCUCAAUAA
Sequence (MODOMICS CODE ENCODING) AUUAAACCACAAGGAUUCAGACAGAGCCCAGAGCCCUGAAAACUUUGGCCACGCACUUUCCCGCAGCAGCCACAGGCACCGGCAACUUCAGAGAGGUAAUUAGAACUUCGGAAAUCUUAGUGGAAAAGAUGGAGAACUAAGUCCUCCGCAGACUUUCCCACUAAGUAUCCUCAAGAAUCACUUUCUGCAUCGGGCAAAACAGAAUUAGAAGCAAGAAUCUAGACAAGGCUUCGUCCUCAUUUAGAAGCCUUUAAGAAUUCUCUGCUUUAAGUGGAUGAAAACGUCCCUGUAUGGCUGGGUUGCCAUGGUUCCUCGCUGUGACCCCCAGGGCUACUGAGCCUGCCAUAUAAAAGUGGAAUGAGGAAUGCAGCCGUUCUGAACACCACCCUCCAUUUCAUUCUGGAACCGGGAAGGUACACCCAGGCAUGACAAUAGCUUCUCUCCUCACAGAAAUUUAACUGAUUUCUUCAUUCUCCAUUUAGCAAGGUCAUGGAAGAUUUGGAGGAAACAUUAUUUGAAGAAUUUGAAAACUAUUCCUAUGACCUAGACUAUUACUCUCUGGAGUCUGAUUUGGAGGAGAAAGUCCAGCUGGGAGUUGUUCACUGGGUCUCCCUGGUGUUAUAUUGUUUGGCUUUUGUUCUGGGAAUUCCAGGAAAUGCCAUCGUCAUUUGGUUCACGGGGUUCAAGUGGAAGAAGACAGUCACCACUCUGUGGUUCCUCAAUCUAGCCAUUGCGGAUUUCAUUUUUCUUCUCUUUCUGCCCCUGUACAUCUCCUAUGUGGCCAUGAAUUUCCACUGGCCCUUUGGCAUCUGGCUGUGCAAAGCCAAUUCCUUCACUGCCCAGUUGA2000000006ACAUGUUUGCCAGUGUUUUUUUCCUGACAGUGAUCAGCCUGGACCACUAUAUCCACUUGAUCCAUCCUGUCUUAUCUCAUCGGCAUCGAACCCUCAAGAACUCUCUGAUUGUCAUUAUAUUCAUCUGGCUUUUGGCUUCUCUAAUUGGCGGUCCUGCCCUGUACUUCCGGG2000000006ACACUGUGGAGUUCAAUAAUCAUACUCUUUGCUAUAACAAUUUUCAGAAGCAUGAUCCUGACCUCACUUUGAUCAGGCACCAUGUUCUGACUUGGGUGAAAUUUAUCAUUGGCUAUCUCUUCCCUUUGCUAACAAUGAGUAUUUGCUACUUGUGUCUCAUCUUCAAGGUGAAGAAGCGAAGCAUCCUGAUCUCCAGUAGGCAUUUCUGG2000000006ACAAUUCUGGUUGUGGUUGUGGCCUUUGUGGUUUGCUGG2000000006ACUCCUUAUCACCUGUUUAGCAUUUGGGAGCUCACCAUUCACCACAAUAGCUAUUCCCACCAUGUGAUGCAGGCUGGAAUCCCCCUCUCCACUGGUUUGGCAUUCCUCAAUAGUUGCUUGAACCCCAUCCUUUAUGUCCUAAUUAGUAAGAAGUUCCAAGCUCGCUUCCGGUCCUCAGUUGCUGAGAUACUCAAGUACACACUGUGGGAAGUCAGCUGUUCUGGCACAGUGAGUGAACAGCUCAGGAACUCAGAAACCAAGAAUCUGUGUCUCCUGGAAACAGCUCAAUAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 848 1019 1228 1267
Modification Positions m6A m6A m6A m6A
Genomic Coordinates 2:206176889:- 2:206176718:- 2:206176509:- 2:206176470:-
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs Lny8GcCeVGc9
UKen6WEino9G
5FhTyQVy2tKW
6AyXsheySjfx
KRfQJWH4K5KH
QmcpiJ88DBDn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
5FhTyQVy2tKW
Ap2q43bQLNek
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
QmcpiJ88DBDn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML