General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000416400
Gene ID:	ENSG00000143952
Gene Name:	VPS54
Sequence (UNICHARACTER ENCODING)	AUUCUCUGUCAGAUGGGAAGAUUGCUUUACCUGAAAAAAAAUCAGGAGCCACAGAAGAAAGGAAACCAGCUGAAGUUCUUAUUGUCGAGGGACAACAGUAUGCAGUUGUUGGAACCGUAUUGCUGUUAAUAAGAAUUAUCCUUGAAUAUUGCCAGUGUGUGGAUAACAUCCCAUCUGUUACUACUGACAUGCUUACUCGUCUGUCAGAUUUAUUGAAGGUGCUGAACAUGACUGAGGCCACUUAGGUCAAAAAACCUGGACUGGCUUCAAAUGUGCAUGGAAGGAAUUCACUGAACUUUACAAAAUUCAUCUCACUAAGUACUUCAAUUCAAGAAGUUGCCAGUUAGUUCUUGGAGCUGGUGCACUGCAAGUUGUUGGACUAAAAACGAUAACUACAAAAAAUUUGGCUCUUUCUUCACGAUGUUUGCAGUUAAUUGUGCACUACAUUCCUGUGAUCCGGGCUCAUUUUGAAGCUCGACUACCACCUAAGCAAUAUAGCAUGCUUAGGCAUUUUGAUCAUAUCACUAAGGACUACCAUGAUCACAUAGCUGAAAUAUCAGCUAAGCUUGUAGCGAUAAUGGAUAGCUUAUUUGACAAGCUGUUAUCUAAGUAUGAAGUGAAGGCUCCUGUUCCUUCUGCCUGUUUCAGGAAUAUUUGUAAGCAAAUGACAAAAAUGCACGAAGCUAUAUUUGAUCUCCUUCCAGAAGAACAAACACAGAUGUUAUUUUUAAGAAUUAAUGCAAGUUAUAAACUCCACUUGAAAAAGCAGUUAUCUCACUUAAAUGUGAUAAAUGAUGGAGGACCUCAAAAUGGGUUGGUCACAGCAGAUGUAGCUUUUUACACUGGAAAUCUUCAAGCCUUAAAAGGCCUUAAAGAUPUGGACCUAAAUAUGGCCGAAAUUUGGGAGCAGAAGAGGUGAUGUCAUCCUGGAAAACUGGGUAGUUCAUCUGACCAUGGGAUGUGUUUGUUAUGAAGAAAAUCUGGAUGCCUGUGAUUCGAGAAUUGAACCUGAAACCCAAAGUGAЖCUGGGGUGGGGGAAGGGAAAAAGGAAAGUAUCAAGUGUUGGGAAACUGGAUUCAGUGGGAUCUACAAGGAAUGUCAUUUUUGUGCAPCCUACAGUGAGGAGUAACUGAUCAGGUGUCUAUAACAUUUUUCAUUCUCUCUGGAAACAGЖCUCAGGUUUCUUUGGACCAAAUCCAAAAGAACACAUAGCUGUAЖCACAGCUGUAGUUGACUAGAAUGCUCUGUAUACUPUAUAUUAAAAAAUGCUUUGCAUUUC
Sequence (SHORT NAMES ENCODING)	AUUCUCUGUCAGAUGGGAAGAUUGCUUUACCUGAAAAAAAAUCAGGAGCCACAGAAGAAAGGAAACCAGCUGAAGUUCUUAUUGUCGAGGGACAACAGUAUGCAGUUGUUGGAACCGUAUUGCUGUUAAUAAGAAUUAUCCUUGAAUAUUGCCAGUGUGUGGAUAACAUCCCAUCUGUUACUACUGACAUGCUUACUCGUCUGUCAGAUUUAUUGAAGGUGCUGAACAUGACUGAGGCCACUUAGGUCAAAAAACCUGGACUGGCUUCAAAUGUGCAUGGAAGGAAUUCACUGAACUUUACAAAAUUCAUCUCACUAAGUACUUCAAUUCAAGAAGUUGCCAGUUAGUUCUUGGAGCUGGUGCACUGCAAGUUGUUGGACUAAAAACGAUAACUACAAAAAAUUUGGCUCUUUCUUCACGAUGUUUGCAGUUAAUUGUGCACUACAUUCCUGUGAUCCGGGCUCAUUUUGAAGCUCGACUACCACCUAAGCAAUAUAGCAUGCUUAGGCAUUUUGAUCAUAUCACUAAGGACUACCAUGAUCACAUAGCUGAAAUAUCAGCUAAGCUUGUAGCGAUAAUGGAUAGCUUAUUUGACAAGCUGUUAUCUAAGUAUGAAGUGAAGGCUCCUGUUCCUUCUGCCUGUUUCAGGAAUAUUUGUAAGCAAAUGACAAAAAUGCACGAAGCUAUAUUUGAUCUCCUUCCAGAAGAACAAACACAGAUGUUAUUUUUAAGAAUUAAUGCAAGUUAUAAACUCCACUUGAAAAAGCAGUUAUCUCACUUAAAUGUGAUAAAUGAUGGAGGACCUCAAAAUGGGUUGGUCACAGCAGAUGUAGCUUUUUACACUGGAAAUCUUCAAGCCUUAAAAGGCCUUAAAGAUYUGGACCUAAAUAUGGCCGAAAUUUGGGAGCAGAAGAGGUGAUGUCAUCCUGGAAAACUGGGUAGUUCAUCUGACCAUGGGAUGUGUUUGUUAUGAAGAAAAUCUGGAUGCCUGUGAUUCGAGAAUUGAACCUGAAACCCAAAGUGAm6ACUGGGGUGGGGGAAGGGAAAAAGGAAAGUAUCAAGUGUUGGGAAACUGGAUUCAGUGGGAUCUACAAGGAAUGUCAUUUUUGUGCAYCCUACAGUGAGGAGUAACUGAUCAGGUGUCUAUAACAUUUUUCAUUCUCUCUGGAAACAGm6ACUCAGGUUUCUUUGGACCAAAUCCAAAAGAACACAUAGCUGUAm6ACACAGCUGUAGUUGACUAGAAUGCUCUGUAUACUYUAUAUUAAAAAAUGCUUUGCAUUUC
Sequence (MODOMICS CODE ENCODING)	AUUCUCUGUCAGAUGGGAAGAUUGCUUUACCUGAAAAAAAAUCAGGAGCCACAGAAGAAAGGAAACCAGCUGAAGUUCUUAUUGUCGAGGGACAACAGUAUGCAGUUGUUGGAACCGUAUUGCUGUUAAUAAGAAUUAUCCUUGAAUAUUGCCAGUGUGUGGAUAACAUCCCAUCUGUUACUACUGACAUGCUUACUCGUCUGUCAGAUUUAUUGAAGGUGCUGAACAUGACUGAGGCCACUUAGGUCAAAAAACCUGGACUGGCUUCAAAUGUGCAUGGAAGGAAUUCACUGAACUUUACAAAAUUCAUCUCACUAAGUACUUCAAUUCAAGAAGUUGCCAGUUAGUUCUUGGAGCUGGUGCACUGCAAGUUGUUGGACUAAAAACGAUAACUACAAAAAAUUUGGCUCUUUCUUCACGAUGUUUGCAGUUAAUUGUGCACUACAUUCCUGUGAUCCGGGCUCAUUUUGAAGCUCGACUACCACCUAAGCAAUAUAGCAUGCUUAGGCAUUUUGAUCAUAUCACUAAGGACUACCAUGAUCACAUAGCUGAAAUAUCAGCUAAGCUUGUAGCGAUAAUGGAUAGCUUAUUUGACAAGCUGUUAUCUAAGUAUGAAGUGAAGGCUCCUGUUCCUUCUGCCUGUUUCAGGAAUAUUUGUAAGCAAAUGACAAAAAUGCACGAAGCUAUAUUUGAUCUCCUUCCAGAAGAACAAACACAGAUGUUAUUUUUAAGAAUUAAUGCAAGUUAUAAACUCCACUUGAAAAAGCAGUUAUCUCACUUAAAUGUGAUAAAUGAUGGAGGACCUCAAAAUGGGUUGGUCACAGCAGAUGUAGCUUUUUACACUGGAAAUCUUCAAGCCUUAAAAGGCCUUAAAGAU2000000009UUGGACCUAAAUAUGGCCGAAAUUUGGGAGCAGAAGAGGUGAUGUCAUCCUGGAAAACUGGGUAGUUCAUCUGACCAUGGGAUGUGUUUGUUAUGAAGAAAAUCUGGAUGCCUGUGAUUCGAGAAUUGAACCUGAAACCCAAAGUGA2000000006ACUGGGGUGGGGGAAGGGAAAAAGGAAAGUAUCAAGUGUUGGGAAACUGGAUUCAGUGGGAUCUACAAGGAAUGUCAUUUUUGUGCA2000000009UCCUACAGUGAGGAGUAACUGAUCAGGUGUCUAUAACAUUUUUCAUUCUCUCUGGAAACAG2000000006ACUCAGGUUUCUUUGGACCAAAUCCAAAAGAACACAUAGCUGUA2000000006ACACAGCUGUAGUUGACUAGAAUGCUCUGUAUACU2000000009UUAUAUUAAAAAAUGCUUUGCAUUUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	878	1025	1112	1173	1217	1252
Modification Positions	Y	m6A	Y	m6A	m6A	Y
Genomic Coordinates	2:63893471:-	2:63893324:-	2:63893237:-	2:63893176:-	2:63893132:-	2:63893097:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8