General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000409501
Gene ID:	ENSG00000115652
Gene Name:	UXS1
Sequence (UNICHARACTER ENCODING)	AUUGUGCAGCAGGCGGGCCCCCGCGCGGUAGGGCCCUGGACCCGCGCGGCUCCCGGGGAUGGUGAGCAAGGCGCUGCUGCGCCUCGUGUCUGCCGUCAACCGCAGGAGGAUGAAGCUGCUGCUGGGCAUCGCCUUGCUGGCCUACGUCGCCUCUGUUUGGGGCAACUUCGUUAAUAUGAGGUCUAUCCAGGAAAAUGGUGAACUAAAAAUUGAAAGCAAGAUUGAAGAGAUGGUUGAACCACUAAGAGAGAAAAUCAGAGAUUUAGAAAAAAGCUPUACCCAGAAAUACCCACCAGUAAAGUUUUUAUCAGAAAAGGAUCGGAAAAGAAUUUUGAUAACAGGAGGCGCAGGGUUCGUGGGCUCCCAUCUAACUGACAAACUCAUGAUGGACGGCCACGAGGUGACCGUGGUGGACAAUUUCUUCACGGGCAGGAAGAGAAACGUGGAGCACUGGAUCGGACAUGAGAACUUCGAGUUGAUUAЖCCACGACGUGGUGGAGCCCCUCUACAUCGAGGUUGACCAGAUAUACCAUCUGGCAUCUCCAGCCUCCCCUCCAAACUACAUGUAUAAUCCUAUCAAGACAUUAAAGACCAAUACGAUUGGGACAUUAAЖCAUGUUGGGGCUGGCAAAACGAGUCGGUGCCCGUCUGCUCCUGGCCUCCACAUCGGAGGUGUAUGGAGAUCCUGAAGUCCACCCUCAAAGUGAGGAUUACUGGGGCCACGUGAAUCCAAUAGGACCUCGGGCCUGCUACGAUGAAGGCAAACGUGUUGCAGAGACCAUGUGCUAUGCCUACAUGAAGCAGGAAGGCGUGGAAGUGCGAGUGGCCAGAAUCUUCAACACCUUUGGGCCACGCAUGCACAUGAACGAUGGGCGAGUAGUCAGCAACUUCAPCCUGCAGGCGCUCCAGGGGGAGCCACUCACGGUAUACGGAUCCGGGUCUCAGACAAGGGCGUUCCAGUACGUCAGCGAUCUAGUGAAUGGCCUCGUGGCUCUCAUGAACAGCAACGUCAGCAGCCCGGUCAACCUGGGGAACCCAGAAGAACACACAAUCCUAGAAUUUGCUCAGUUAAUUAAAAACCUUGUUGGUAGCGGAAGUGAAAUUCAGUUUCUCUCCGAAGCCCAGGAUGACCCACAGAAAAGAAAACCAGACAUCAAAAAAGCAAAGCUGAUGCUGGGGUGGGAGCCCGUGGUCCCGCUGGAGGAAGGUUUAAЖCAAAGCAAUUCACUACUUCCGUAAAGAACUCGAGUACCAGGCAAAUAAUCAGUACAPCCCCAAACCAAAGCCUGCCAGAAUAAAGAAAGGACGGACUCGCCACAGCUGAACUCCUCACUUUUAGGACACAAGACUACCAUUGUACACUUGAUGGGAUGUAUUUUUGGCUUUUUUUUGUUGUCGUUUAAAGAAAGЖCUPUAЖCAGGUGUCAUGAAGAACAAACUGGAAUUUCAUUCUGAAGCUUGCUPUAAUGAAAUGGAUGUGCCUAAAAGCUCCCCUCAAAAAЖCUGCAGAUUUUGCCUUGCACUUUUUGAAUCUCUCUUUUUAUGUAAAAUAGCGUAGAUGCAUCUCUGCGUAUUUUCAAGUUUUUUUAUCUUGCUGUGAGAGCAUAUGUUGUGACUGUCGUUGACAGUUUUAUUUACUGGUUUCUUUGUGAAGCUGAAAAGGAACAUUAAGCGGGACAAAAAAUGCCGAUUUUAUUUAUGAAAGUGGGUACUUAAUAAAUGAGUCGUUAUACUAUGCAUAAAGAAAAAUCCUAGCAGUAUUGUCAGGUGGUGGUGCGCCGGCAUUGAUUUUAGGGCAGAUAAAAGAAUUCUGUGUGAGAGCUPUAUGUUUCUCUUUUAAUUCAG
Sequence (SHORT NAMES ENCODING)	AUUGUGCAGCAGGCGGGCCCCCGCGCGGUAGGGCCCUGGACCCGCGCGGCUCCCGGGGAUGGUGAGCAAGGCGCUGCUGCGCCUCGUGUCUGCCGUCAACCGCAGGAGGAUGAAGCUGCUGCUGGGCAUCGCCUUGCUGGCCUACGUCGCCUCUGUUUGGGGCAACUUCGUUAAUAUGAGGUCUAUCCAGGAAAAUGGUGAACUAAAAAUUGAAAGCAAGAUUGAAGAGAUGGUUGAACCACUAAGAGAGAAAAUCAGAGAUUUAGAAAAAAGCUYUACCCAGAAAUACCCACCAGUAAAGUUUUUAUCAGAAAAGGAUCGGAAAAGAAUUUUGAUAACAGGAGGCGCAGGGUUCGUGGGCUCCCAUCUAACUGACAAACUCAUGAUGGACGGCCACGAGGUGACCGUGGUGGACAAUUUCUUCACGGGCAGGAAGAGAAACGUGGAGCACUGGAUCGGACAUGAGAACUUCGAGUUGAUUAm6ACCACGACGUGGUGGAGCCCCUCUACAUCGAGGUUGACCAGAUAUACCAUCUGGCAUCUCCAGCCUCCCCUCCAAACUACAUGUAUAAUCCUAUCAAGACAUUAAAGACCAAUACGAUUGGGACAUUAAm6ACAUGUUGGGGCUGGCAAAACGAGUCGGUGCCCGUCUGCUCCUGGCCUCCACAUCGGAGGUGUAUGGAGAUCCUGAAGUCCACCCUCAAAGUGAGGAUUACUGGGGCCACGUGAAUCCAAUAGGACCUCGGGCCUGCUACGAUGAAGGCAAACGUGUUGCAGAGACCAUGUGCUAUGCCUACAUGAAGCAGGAAGGCGUGGAAGUGCGAGUGGCCAGAAUCUUCAACACCUUUGGGCCACGCAUGCACAUGAACGAUGGGCGAGUAGUCAGCAACUUCAYCCUGCAGGCGCUCCAGGGGGAGCCACUCACGGUAUACGGAUCCGGGUCUCAGACAAGGGCGUUCCAGUACGUCAGCGAUCUAGUGAAUGGCCUCGUGGCUCUCAUGAACAGCAACGUCAGCAGCCCGGUCAACCUGGGGAACCCAGAAGAACACACAAUCCUAGAAUUUGCUCAGUUAAUUAAAAACCUUGUUGGUAGCGGAAGUGAAAUUCAGUUUCUCUCCGAAGCCCAGGAUGACCCACAGAAAAGAAAACCAGACAUCAAAAAAGCAAAGCUGAUGCUGGGGUGGGAGCCCGUGGUCCCGCUGGAGGAAGGUUUAAm6ACAAAGCAAUUCACUACUUCCGUAAAGAACUCGAGUACCAGGCAAAUAAUCAGUACAYCCCCAAACCAAAGCCUGCCAGAAUAAAGAAAGGACGGACUCGCCACAGCUGAACUCCUCACUUUUAGGACACAAGACUACCAUUGUACACUUGAUGGGAUGUAUUUUUGGCUUUUUUUUGUUGUCGUUUAAAGAAAGm6ACUYUAm6ACAGGUGUCAUGAAGAACAAACUGGAAUUUCAUUCUGAAGCUUGCUYUAAUGAAAUGGAUGUGCCUAAAAGCUCCCCUCAAAAAm6ACUGCAGAUUUUGCCUUGCACUUUUUGAAUCUCUCUUUUUAUGUAAAAUAGCGUAGAUGCAUCUCUGCGUAUUUUCAAGUUUUUUUAUCUUGCUGUGAGAGCAUAUGUUGUGACUGUCGUUGACAGUUUUAUUUACUGGUUUCUUUGUGAAGCUGAAAAGGAACAUUAAGCGGGACAAAAAAUGCCGAUUUUAUUUAUGAAAGUGGGUACUUAAUAAAUGAGUCGUUAUACUAUGCAUAAAGAAAAAUCCUAGCAGUAUUGUCAGGUGGUGGUGCGCCGGCAUUGAUUUUAGGGCAGAUAAAAGAAUUCUGUGUGAGAGCUYUAUGUUUCUCUUUUAAUUCAG
Sequence (MODOMICS CODE ENCODING)	AUUGUGCAGCAGGCGGGCCCCCGCGCGGUAGGGCCCUGGACCCGCGCGGCUCCCGGGGAUGGUGAGCAAGGCGCUGCUGCGCCUCGUGUCUGCCGUCAACCGCAGGAGGAUGAAGCUGCUGCUGGGCAUCGCCUUGCUGGCCUACGUCGCCUCUGUUUGGGGCAACUUCGUUAAUAUGAGGUCUAUCCAGGAAAAUGGUGAACUAAAAAUUGAAAGCAAGAUUGAAGAGAUGGUUGAACCACUAAGAGAGAAAAUCAGAGAUUUAGAAAAAAGCU2000000009UUACCCAGAAAUACCCACCAGUAAAGUUUUUAUCAGAAAAGGAUCGGAAAAGAAUUUUGAUAACAGGAGGCGCAGGGUUCGUGGGCUCCCAUCUAACUGACAAACUCAUGAUGGACGGCCACGAGGUGACCGUGGUGGACAAUUUCUUCACGGGCAGGAAGAGAAACGUGGAGCACUGGAUCGGACAUGAGAACUUCGAGUUGAUUA2000000006ACCACGACGUGGUGGAGCCCCUCUACAUCGAGGUUGACCAGAUAUACCAUCUGGCAUCUCCAGCCUCCCCUCCAAACUACAUGUAUAAUCCUAUCAAGACAUUAAAGACCAAUACGAUUGGGACAUUAA2000000006ACAUGUUGGGGCUGGCAAAACGAGUCGGUGCCCGUCUGCUCCUGGCCUCCACAUCGGAGGUGUAUGGAGAUCCUGAAGUCCACCCUCAAAGUGAGGAUUACUGGGGCCACGUGAAUCCAAUAGGACCUCGGGCCUGCUACGAUGAAGGCAAACGUGUUGCAGAGACCAUGUGCUAUGCCUACAUGAAGCAGGAAGGCGUGGAAGUGCGAGUGGCCAGAAUCUUCAACACCUUUGGGCCACGCAUGCACAUGAACGAUGGGCGAGUAGUCAGCAACUUCA2000000009UCCUGCAGGCGCUCCAGGGGGAGCCACUCACGGUAUACGGAUCCGGGUCUCAGACAAGGGCGUUCCAGUACGUCAGCGAUCUAGUGAAUGGCCUCGUGGCUCUCAUGAACAGCAACGUCAGCAGCCCGGUCAACCUGGGGAACCCAGAAGAACACACAAUCCUAGAAUUUGCUCAGUUAAUUAAAAACCUUGUUGGUAGCGGAAGUGAAAUUCAGUUUCUCUCCGAAGCCCAGGAUGACCCACAGAAAAGAAAACCAGACAUCAAAAAAGCAAAGCUGAUGCUGGGGUGGGAGCCCGUGGUCCCGCUGGAGGAAGGUUUAA2000000006ACAAAGCAAUUCACUACUUCCGUAAAGAACUCGAGUACCAGGCAAAUAAUCAGUACA2000000009UCCCCAAACCAAAGCCUGCCAGAAUAAAGAAAGGACGGACUCGCCACAGCUGAACUCCUCACUUUUAGGACACAAGACUACCAUUGUACACUUGAUGGGAUGUAUUUUUGGCUUUUUUUUGUUGUCGUUUAAAGAAAG2000000006ACU2000000009UUA2000000006ACAGGUGUCAUGAAGAACAAACUGGAAUUUCAUUCUGAAGCUUGCU2000000009UUAAUGAAAUGGAUGUGCCUAAAAGCUCCCCUCAAAAA2000000006ACUGCAGAUUUUGCCUUGCACUUUUUGAAUCUCUCUUUUUAUGUAAAAUAGCGUAGAUGCAUCUCUGCGUAUUUUCAAGUUUUUUUAUCUUGCUGUGAGAGCAUAUGUUGUGACUGUCGUUGACAGUUUUAUUUACUGGUUUCUUUGUGAAGCUGAAAAGGAACAUUAAGCGGGACAAAAAAUGCCGAUUUUAUUUAUGAAAGUGGGUACUUAAUAAAUGAGUCGUUAUACUAUGCAUAAAGAAAAAUCCUAGCAGUAUUGUCAGGUGGUGGUGCGCCGGCAUUGAUUUUAGGGCAGAUAAAAGAAUUCUGUGUGAGAGCU2000000009UUAUGUUUCUCUUUUAAUUCAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	276	483	612	891	1212	1269	1407	1410	1413	1459	1497	1818
Modification Positions	Y	m6A	m6A	Y	m6A	Y	m6A	Y	m6A	Y	m6A	Y
Genomic Coordinates	2:106158116:-	2:106145222:-	2:106129682:-	2:106112677:-	2:106094135:-	2:106094078:-	2:106093940:-	2:106093937:-	2:106093934:-	2:106093888:-	2:106093850:-	2:106093529:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL nfCHyrYzE6fB WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8