General Data

RNA Type	pseudogene
Original Source	Sci-ModoM
Transcript ID:	ENST00000440028
Gene ID:	ENSG00000224287
Gene Name:	MSL3P1
Sequence (UNICHARACTER ENCODING)	AUUGUUAAUGUUAUUGUUGGGAAAGGCGAAAAAGGCAGAAAGAUCCCAGAAUAGCUGAUCCGUUGUAACGGUUGGAACUGAAGCUGGGAUAGAUGGGUAGCCGAAGAUCAUGUGCUUCGUGAGCCCAGUGAAAAUCGUAGAUUGCAGCAUAAAUUGGCAAGAAAUGCUGUAGCUCACCUGAGGAGCAAGAGAGAAAGAAGCAGCCGCUCCAGGUUGCUUGGUGCUGACUCUGUCUUUUUUUAAAAGGCCUCUCCAUCGAAGAAAAAAAUGAAAAUGAUGAAAACUCAUUAAGCAGUUCCUCUGACAGUAGUGAAGACAAGGAUGAAAAAAUAAGUGAAGAAUGUGAUAUUGAAGAAAAGACUGAAGUGAAAGAAGAACCGGAGCUUCAAACAAAAAGGGAAAUGGAAGAAAGAACAGUAACUCUAGAAAUCCCUGAAGUUCUGAAGAGGCAGCUGGAGGAUGAUUGUUACUACAUUAAUCGGAGGAAACGGUUAGUGCAACUUCCAUGCCACACCAACAUCAUAACGAUUUUGGAAUCCUAUGUGAAGCAUUUUGCUAUCAGUGCAGCCUUUUCAGCCAAUGAGAGGCCUCGUCACCAUCACGCUAUGCCACAUGCCAGCAUGAACGUGCCUUAUAUCCCAGCAGAAAAGAAUAUUGACCUUUGUAAGGAGAUGGUGGAUGGAUUAAGAAUAACCUUUGAUUACACUCUCCCGUUGGUUUUACUCUAUCCCUAUGAЖCAAGCUCAGUAUAAAAAGGUGЖCUGCAUCUAAGGUUUUUCUUGCAAUUAAGGAAAGUGCCACAAAUACUAAUAGGAGCCAGGAGAAGCUCUCUCCCAGCUUACGUUUGUUGAAUCCAUCCAGGCCGCAGUCUACAGAGAGUCAGUCGACCAGCGGUGAACCAGCCACCCCUAAAAGGCGCAAAGCCGAGCCGCAAGCAGUGCAGUCUCUGAGGCGGUCCUCGCCCCACACCGCCAACUGUGACAGGCUUUCUAAGAGCAGCACCUCACCUCAGCCCAAGCGCUGGCAGCAGGЖCAUGUCCACCAGUGUGCCCAAGCUGUUCCUGCACCUGGAAAAGAAGACACCUGUGCAUAGCAGAUCAUCUUCACCUACUCUGACUCCUAGCCAGGAAGGGAGUCCUGUGUUUGCUGGCUUUGAAGGGAGAAGAACUAAUGAAAUAAAUGAGGUCCUCUCCUGGAAGCUCGUACCUGЖCAAUUACCCACCAGGUGACCAGCCACCUCCACCCUCUUACAUUUACGGGGCGCAACAUUUGCUGCGAUUGUUUGUCAAACUUCCAGAAAUUCUUGGAAAAAUGUCCUUUACUGAGAAGAAUCUGAAGGCUUUAUUGAAGCACUUUGAUCUCUUUGUGAGGUUUUUAGCAGAAUACCACGAUGЖCUUCUUCCCAGAGUCAGCUUACGUCGCUGCCUCUGAGGUGCAUUACAGCACCAGGAACCCCCAGGCAGUCAAUAAGUG
Sequence (SHORT NAMES ENCODING)	AUUGUUAAUGUUAUUGUUGGGAAAGGCGAAAAAGGCAGAAAGAUCCCAGAAUAGCUGAUCCGUUGUAACGGUUGGAACUGAAGCUGGGAUAGAUGGGUAGCCGAAGAUCAUGUGCUUCGUGAGCCCAGUGAAAAUCGUAGAUUGCAGCAUAAAUUGGCAAGAAAUGCUGUAGCUCACCUGAGGAGCAAGAGAGAAAGAAGCAGCCGCUCCAGGUUGCUUGGUGCUGACUCUGUCUUUUUUUAAAAGGCCUCUCCAUCGAAGAAAAAAAUGAAAAUGAUGAAAACUCAUUAAGCAGUUCCUCUGACAGUAGUGAAGACAAGGAUGAAAAAAUAAGUGAAGAAUGUGAUAUUGAAGAAAAGACUGAAGUGAAAGAAGAACCGGAGCUUCAAACAAAAAGGGAAAUGGAAGAAAGAACAGUAACUCUAGAAAUCCCUGAAGUUCUGAAGAGGCAGCUGGAGGAUGAUUGUUACUACAUUAAUCGGAGGAAACGGUUAGUGCAACUUCCAUGCCACACCAACAUCAUAACGAUUUUGGAAUCCUAUGUGAAGCAUUUUGCUAUCAGUGCAGCCUUUUCAGCCAAUGAGAGGCCUCGUCACCAUCACGCUAUGCCACAUGCCAGCAUGAACGUGCCUUAUAUCCCAGCAGAAAAGAAUAUUGACCUUUGUAAGGAGAUGGUGGAUGGAUUAAGAAUAACCUUUGAUUACACUCUCCCGUUGGUUUUACUCUAUCCCUAUGAm6ACAAGCUCAGUAUAAAAAGGUGm6ACUGCAUCUAAGGUUUUUCUUGCAAUUAAGGAAAGUGCCACAAAUACUAAUAGGAGCCAGGAGAAGCUCUCUCCCAGCUUACGUUUGUUGAAUCCAUCCAGGCCGCAGUCUACAGAGAGUCAGUCGACCAGCGGUGAACCAGCCACCCCUAAAAGGCGCAAAGCCGAGCCGCAAGCAGUGCAGUCUCUGAGGCGGUCCUCGCCCCACACCGCCAACUGUGACAGGCUUUCUAAGAGCAGCACCUCACCUCAGCCCAAGCGCUGGCAGCAGGm6ACAUGUCCACCAGUGUGCCCAAGCUGUUCCUGCACCUGGAAAAGAAGACACCUGUGCAUAGCAGAUCAUCUUCACCUACUCUGACUCCUAGCCAGGAAGGGAGUCCUGUGUUUGCUGGCUUUGAAGGGAGAAGAACUAAUGAAAUAAAUGAGGUCCUCUCCUGGAAGCUCGUACCUGm6ACAAUUACCCACCAGGUGACCAGCCACCUCCACCCUCUUACAUUUACGGGGCGCAACAUUUGCUGCGAUUGUUUGUCAAACUUCCAGAAAUUCUUGGAAAAAUGUCCUUUACUGAGAAGAAUCUGAAGGCUUUAUUGAAGCACUUUGAUCUCUUUGUGAGGUUUUUAGCAGAAUACCACGAUGm6ACUUCUUCCCAGAGUCAGCUUACGUCGCUGCCUCUGAGGUGCAUUACAGCACCAGGAACCCCCAGGCAGUCAAUAAGUG
Sequence (MODOMICS CODE ENCODING)	AUUGUUAAUGUUAUUGUUGGGAAAGGCGAAAAAGGCAGAAAGAUCCCAGAAUAGCUGAUCCGUUGUAACGGUUGGAACUGAAGCUGGGAUAGAUGGGUAGCCGAAGAUCAUGUGCUUCGUGAGCCCAGUGAAAAUCGUAGAUUGCAGCAUAAAUUGGCAAGAAAUGCUGUAGCUCACCUGAGGAGCAAGAGAGAAAGAAGCAGCCGCUCCAGGUUGCUUGGUGCUGACUCUGUCUUUUUUUAAAAGGCCUCUCCAUCGAAGAAAAAAAUGAAAAUGAUGAAAACUCAUUAAGCAGUUCCUCUGACAGUAGUGAAGACAAGGAUGAAAAAAUAAGUGAAGAAUGUGAUAUUGAAGAAAAGACUGAAGUGAAAGAAGAACCGGAGCUUCAAACAAAAAGGGAAAUGGAAGAAAGAACAGUAACUCUAGAAAUCCCUGAAGUUCUGAAGAGGCAGCUGGAGGAUGAUUGUUACUACAUUAAUCGGAGGAAACGGUUAGUGCAACUUCCAUGCCACACCAACAUCAUAACGAUUUUGGAAUCCUAUGUGAAGCAUUUUGCUAUCAGUGCAGCCUUUUCAGCCAAUGAGAGGCCUCGUCACCAUCACGCUAUGCCACAUGCCAGCAUGAACGUGCCUUAUAUCCCAGCAGAAAAGAAUAUUGACCUUUGUAAGGAGAUGGUGGAUGGAUUAAGAAUAACCUUUGAUUACACUCUCCCGUUGGUUUUACUCUAUCCCUAUGA2000000006ACAAGCUCAGUAUAAAAAGGUG2000000006ACUGCAUCUAAGGUUUUUCUUGCAAUUAAGGAAAGUGCCACAAAUACUAAUAGGAGCCAGGAGAAGCUCUCUCCCAGCUUACGUUUGUUGAAUCCAUCCAGGCCGCAGUCUACAGAGAGUCAGUCGACCAGCGGUGAACCAGCCACCCCUAAAAGGCGCAAAGCCGAGCCGCAAGCAGUGCAGUCUCUGAGGCGGUCCUCGCCCCACACCGCCAACUGUGACAGGCUUUCUAAGAGCAGCACCUCACCUCAGCCCAAGCGCUGGCAGCAGG2000000006ACAUGUCCACCAGUGUGCCCAAGCUGUUCCUGCACCUGGAAAAGAAGACACCUGUGCAUAGCAGAUCAUCUUCACCUACUCUGACUCCUAGCCAGGAAGGGAGUCCUGUGUUUGCUGGCUUUGAAGGGAGAAGAACUAAUGAAAUAAAUGAGGUCCUCUCCUGGAAGCUCGUACCUG2000000006ACAAUUACCCACCAGGUGACCAGCCACCUCCACCCUCUUACAUUUACGGGGCGCAACAUUUGCUGCGAUUGUUUGUCAAACUUCCAGAAAUUCUUGGAAAAAUGUCCUUUACUGAGAAGAAUCUGAAGGCUUUAUUGAAGCACUUUGAUCUCUUUGUGAGGUUUUUAGCAGAAUACCACGAUG2000000006ACUUCUUCCCAGAGUCAGCUUACGUCGCUGCCUCUGAGGUGCAUUACAGCACCAGGAACCCCCAGGCAGUCAAUAAGUG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	737	759	1030	1207	1390
Modification Positions	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	2:233866860:-	2:233866838:-	2:233866567:-	2:233866390:-	2:233866207:-
Level of Experimental Evidence	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi	93arJtwJmuS9 BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3	3TeAZFYFxgvp 6AyXsheySjfx Ap2q43bQLNek msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 93arJtwJmuS9 Lny8GcCeVGc9 LZJKems7W2wi	BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML