Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000494983
Gene ID: ENSG00000118260
Gene Name: CREB1
Sequence (UNICHARACTER ENCODING) CAAAAAUUGUAAAGCAGGAUGUCAGUGAAUUUGAAUUCUGAACGUCAGUUUGAAGAUGCUGCCUCUGGAGACGUACAAACAUACCAGAUUCGCACAGCACCCACUAGCACUAUUGCCCCUGGAGUUGUUAUGGCAUCCUCCCCAGCACUUCCUACACAGCCUGCUGAAGAAGCAGCACGAAAGAGAGAGGUCCGUCUAAUGAAGAACAGGGAAGCAGCUCGAGAGUGUCGUAGAAAGAAGAAAGAAUAUGUGAAAUGUUUAGAAAACAGAGUGGCAGUGCUUGAAAAUCAAAACAAGЖCAUUGAUUGAGGAGCUAAAAGCACUUAAGGЖCCUUUACUGCCACAAAUCAGAUUAAUUUGGGЖUUUAAAUUUUCACCUGUUAAGGUGGAAAAUGGЖCUGGCUUGGCCACAACCUGAAAGЖCAAAAUAAЖCAUUUUAUUUUCUAAACAUUUCUUUUUUUCUAUGCGCAAAACUGCCUGAAAGCAACUACAGAAUUUCAUUCAUUUGUGCUUUUGCAUUAAЖCUGUGAAUGUUCCAACACCUGCCUCCACUUCUCCCCUCAAGAAAUUUUCAACGCCAGGAAUCAUGAAGAGЖCUUCUGCUUUUCAACCCCCACCCUCCUCAAGAAGUAAUAAUUUGUUUACUUGUAAAUUGAUGGGAGAAAUGAGGAAAAGAAAAUCUUUUUAAAAAUGAUUUCAAGGUUUGUGCUGAGCUCCUUGAUUGCCUUAGGGЖCAGAAUUACCCCAGCCUCUUGAGCUGAA
Sequence (SHORT NAMES ENCODING) CAAAAAUUGUAAAGCAGGAUGUCAGUGAAUUUGAAUUCUGAACGUCAGUUUGAAGAUGCUGCCUCUGGAGACGUACAAACAUACCAGAUUCGCACAGCACCCACUAGCACUAUUGCCCCUGGAGUUGUUAUGGCAUCCUCCCCAGCACUUCCUACACAGCCUGCUGAAGAAGCAGCACGAAAGAGAGAGGUCCGUCUAAUGAAGAACAGGGAAGCAGCUCGAGAGUGUCGUAGAAAGAAGAAAGAAUAUGUGAAAUGUUUAGAAAACAGAGUGGCAGUGCUUGAAAAUCAAAACAAGm6ACAUUGAUUGAGGAGCUAAAAGCACUUAAGGm6ACCUUUACUGCCACAAAUCAGAUUAAUUUGGGm6AUUUAAAUUUUCACCUGUUAAGGUGGAAAAUGGm6ACUGGCUUGGCCACAACCUGAAAGm6ACAAAAUAAm6ACAUUUUAUUUUCUAAACAUUUCUUUUUUUCUAUGCGCAAAACUGCCUGAAAGCAACUACAGAAUUUCAUUCAUUUGUGCUUUUGCAUUAAm6ACUGUGAAUGUUCCAACACCUGCCUCCACUUCUCCCCUCAAGAAAUUUUCAACGCCAGGAAUCAUGAAGAGm6ACUUCUGCUUUUCAACCCCCACCCUCCUCAAGAAGUAAUAAUUUGUUUACUUGUAAAUUGAUGGGAGAAAUGAGGAAAAGAAAAUCUUUUUAAAAAUGAUUUCAAGGUUUGUGCUGAGCUCCUUGAUUGCCUUAGGGm6ACAGAAUUACCCCAGCCUCUUGAGCUGAA
Sequence (MODOMICS CODE ENCODING) CAAAAAUUGUAAAGCAGGAUGUCAGUGAAUUUGAAUUCUGAACGUCAGUUUGAAGAUGCUGCCUCUGGAGACGUACAAACAUACCAGAUUCGCACAGCACCCACUAGCACUAUUGCCCCUGGAGUUGUUAUGGCAUCCUCCCCAGCACUUCCUACACAGCCUGCUGAAGAAGCAGCACGAAAGAGAGAGGUCCGUCUAAUGAAGAACAGGGAAGCAGCUCGAGAGUGUCGUAGAAAGAAGAAAGAAUAUGUGAAAUGUUUAGAAAACAGAGUGGCAGUGCUUGAAAAUCAAAACAAG2000000006ACAUUGAUUGAGGAGCUAAAAGCACUUAAGG2000000006ACCUUUACUGCCACAAAUCAGAUUAAUUUGGG2000000006AUUUAAAUUUUCACCUGUUAAGGUGGAAAAUGG2000000006ACUGGCUUGGCCACAACCUGAAAG2000000006ACAAAAUAA2000000006ACAUUUUAUUUUCUAAACAUUUCUUUUUUUCUAUGCGCAAAACUGCCUGAAAGCAACUACAGAAUUUCAUUCAUUUGUGCUUUUGCAUUAA2000000006ACUGUGAAUGUUCCAACACCUGCCUCCACUUCUCCCCUCAAGAAAUUUUCAACGCCAGGAAUCAUGAAGAG2000000006ACUUCUGCUUUUCAACCCCCACCCUCCUCAAGAAGUAAUAAUUUGUUUACUUGUAAAUUGAUGGGAGAAAUGAGGAAAAGAAAAUCUUUUUAAAAAUGAUUUCAAGGUUUGUGCUGAGCUCCUUGAUUGCCUUAGGG2000000006ACAGAAUUACCCCAGCCUCUUGAGCUGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 298 329 361 394 418 427 518 589 726
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 2:207597002:+ 2:207597033:+ 2:207597065:+ 2:207597098:+ 2:207597122:+ 2:207597131:+ 2:207597222:+ 2:207597293:+ 2:207597430:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
D6ncpa2PPWj3
Lny8GcCeVGc9
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
Lny8GcCeVGc9
UKen6WEino9G
VyCX26p5UBRL
Lny8GcCeVGc9
UKen6WEino9G
5FhTyQVy2tKW
5Nnepx5V7yHo
6UuHp6YApVKv
aHkqKEJkRYyb
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KTLz8piFYdwC
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
KENzb7mwdBd9
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq