Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000614273
Gene ID: ENSG00000138061
Gene Name: CYP1B1
Sequence (UNICHARACTER ENCODING) CCACUCACCGACCCCCAGUCUCAAUCUCAACGCUGUGAGGAAACCUCGACUUUGCCAGGUCCCCAAGGGCAGCGGGGCUCGGCGAGCGAGGCACCCUUCUCCGUCCCCAUCCCAAUCCAAGCGCUCCUGGCACUGACGACGCCAAGAGЖCUCGAGUGGGAGUUAAAGCUUCCAGUGAGGGCAGCAGGUGUCCAGGCCGGGCCUGCGGGUUCCUGUUGACGUCUUGCCCUAGGCAAAGGUCCCAGUUCCUUCUCGGAGCCGGCUGUCCCGCGCCACUGGAAACCGCACCUCCCCGCAGGUCACAUGGGCACCAGCCUCAGCCCGAACGACCCUUGGCCGCUAAACCCGCUGUCCAUCCAGCAGACCACGCUCCUGCUACUCCUGUCGGUGCUGGCCACUGUGCAUGUGGGCCAGCGGCUGCUGAGGCAACGGAGGCGGCAGCUCCGGUCCGCGCCCCCGGGCCCGUUUGCGUGGCCACUGAUCGGAAACGCGGCGGCGGUGGGCCAGGCGGCUCACCUCUCGUUCGCUCGCCUGGCGCGGCGCUACGGCGACGUUUUCCAGAUCCGCCUGGGCAGCUGCCCCAUAGUGGUGCUGAAUGGCGAGCGCGCCAUCCACCAGGCCCUGGUGCAGCAGGGCUCGGCCUUCGCCGACCGGCCGGCCUUCGCCUCCUUCCGUGUGGUGUCCGGCGGCCGCAGCAUGGCUUUCGGCCACUACUCGGAGCACUGGAAGGUGCAGCGGCGCGCAGCCCACAGCAUGAUGCGCAACUUCUUCACGCGCCAGCCGCGCAGCCGCCAAGUCCUCGAGGGCCACGUGCUGAGCGAGGCGCGCGAGCUGGUGGCGCUGCUGGUGCGCGGCAGCGCGGACGGCGCCUUCCUCGACCCGAGGCCGCUGACCGUCGUGGCCGUGGCCAACGUCAUGAGUGCCGUGUGUUUCGGCUGCCGCUACAGCCACGACGACCCCGAGUUCCGUGAGCUGCUCAGCCACAACGAAGAGUUCGGGCGCACGGUGGGCGCGGGCAGCCUGGUGGЖCGUGAUGCCCUGGCUGCAGUACUUCCCCAACCCGGUGCGCACCGUUUUCCGCGAAUUCGAGCAGCUCAACCGCAACUUCAGCAACUUCAUCCUGGACAAGUUCUUGAGGCACUGCGAAAGCCUUCGGCCCGGGGCCGCCCCCCGCGACAUGAUGGЖCGCCUUUAUCCUCUCUGCGGAAAAGAAGGCGGCCGGGGЖCUCGCACGGUGGUGGCGCGCGGCUGGAUUUGGAGAACGUACCGGCCACUAUCACUGACAUCUUCGGCGCCAGCCAGGACACCCUGUCCACCGCGCUGCAGUGGCUGCUCCUCCUCUUCACCAGGUAUCCUGAUGUGCAGACUCGAGUGCAGGCAGAAUUGGAUCAGGUCGUGGGGAGGGЖCCGUCUGCCUUGUAUGGGUGACCAGCCCAACCUGCCCUAUGUCCUGGCCUUCCUUUAUGAAGCCAUGCGCUUCUCCAGCUUUGUGCCUGUCACUAUUCCUCAUGCCACCACUGCCAACACCUCUGUCUUGGGCUACCACAUUCCCAAGGЖCACUGUGGUUUUUGUCAACCAGUGGUCUGUGAAUCAUGACCCACUGAAGUGGCCUAACCCGGAGAЖCUUUGAUCCAGCUCGAUUCUUGGЖCAAGGAUGGCCUCAUCAACAAGGЖCCUGACCAGCAGAGUGAUGAUUUUUUCAGUGGGCAAAAGGCGGUGCAUUGGCGAAGAЖCUUUCUAAGAUGCAGCUUUUUCUCUUCAUCUCCAUCCUGGCUCACCAGUGCGAUUUCAGGGCCAACCCAAAUGAGCCUGCGAAAAUGAЖUUUCAGUUAUGGUCUAACCAUUAAACCCAAGUCAUUUAAAGUCAAUGUCACUCUCAGAGAGUCCAUGGAGCUCCUUGAUAGUGCUGUCCAAAAUUUACAAGCCAAGGAAACUUGCCAAUAAGAAGCAAGAGGCAAGCUGAAAUUUUAGAAAUAUUCACAUCUUCGGAGAUGAGGAGUAAAAUUCAGUUUUUUUCCAGUUCCUCUUUUGUGCUGCUUCUCAAUUAGCGUUUAAGGUGAGCAUAAAUCAACUGUCCAUCAGGUGAGGUGUGCUCCAUACCCAGCGGUUCUUCAUGAGUAGUGGGCUAUGCAGGAGCUUCUGGGAGAUUUUUUUGAGUCAAAGЖCUUAAAGGGCCCAAUGAAUU
Sequence (SHORT NAMES ENCODING) CCACUCACCGACCCCCAGUCUCAAUCUCAACGCUGUGAGGAAACCUCGACUUUGCCAGGUCCCCAAGGGCAGCGGGGCUCGGCGAGCGAGGCACCCUUCUCCGUCCCCAUCCCAAUCCAAGCGCUCCUGGCACUGACGACGCCAAGAGm6ACUCGAGUGGGAGUUAAAGCUUCCAGUGAGGGCAGCAGGUGUCCAGGCCGGGCCUGCGGGUUCCUGUUGACGUCUUGCCCUAGGCAAAGGUCCCAGUUCCUUCUCGGAGCCGGCUGUCCCGCGCCACUGGAAACCGCACCUCCCCGCAGGUCACAUGGGCACCAGCCUCAGCCCGAACGACCCUUGGCCGCUAAACCCGCUGUCCAUCCAGCAGACCACGCUCCUGCUACUCCUGUCGGUGCUGGCCACUGUGCAUGUGGGCCAGCGGCUGCUGAGGCAACGGAGGCGGCAGCUCCGGUCCGCGCCCCCGGGCCCGUUUGCGUGGCCACUGAUCGGAAACGCGGCGGCGGUGGGCCAGGCGGCUCACCUCUCGUUCGCUCGCCUGGCGCGGCGCUACGGCGACGUUUUCCAGAUCCGCCUGGGCAGCUGCCCCAUAGUGGUGCUGAAUGGCGAGCGCGCCAUCCACCAGGCCCUGGUGCAGCAGGGCUCGGCCUUCGCCGACCGGCCGGCCUUCGCCUCCUUCCGUGUGGUGUCCGGCGGCCGCAGCAUGGCUUUCGGCCACUACUCGGAGCACUGGAAGGUGCAGCGGCGCGCAGCCCACAGCAUGAUGCGCAACUUCUUCACGCGCCAGCCGCGCAGCCGCCAAGUCCUCGAGGGCCACGUGCUGAGCGAGGCGCGCGAGCUGGUGGCGCUGCUGGUGCGCGGCAGCGCGGACGGCGCCUUCCUCGACCCGAGGCCGCUGACCGUCGUGGCCGUGGCCAACGUCAUGAGUGCCGUGUGUUUCGGCUGCCGCUACAGCCACGACGACCCCGAGUUCCGUGAGCUGCUCAGCCACAACGAAGAGUUCGGGCGCACGGUGGGCGCGGGCAGCCUGGUGGm6ACGUGAUGCCCUGGCUGCAGUACUUCCCCAACCCGGUGCGCACCGUUUUCCGCGAAUUCGAGCAGCUCAACCGCAACUUCAGCAACUUCAUCCUGGACAAGUUCUUGAGGCACUGCGAAAGCCUUCGGCCCGGGGCCGCCCCCCGCGACAUGAUGGm6ACGCCUUUAUCCUCUCUGCGGAAAAGAAGGCGGCCGGGGm6ACUCGCACGGUGGUGGCGCGCGGCUGGAUUUGGAGAACGUACCGGCCACUAUCACUGACAUCUUCGGCGCCAGCCAGGACACCCUGUCCACCGCGCUGCAGUGGCUGCUCCUCCUCUUCACCAGGUAUCCUGAUGUGCAGACUCGAGUGCAGGCAGAAUUGGAUCAGGUCGUGGGGAGGGm6ACCGUCUGCCUUGUAUGGGUGACCAGCCCAACCUGCCCUAUGUCCUGGCCUUCCUUUAUGAAGCCAUGCGCUUCUCCAGCUUUGUGCCUGUCACUAUUCCUCAUGCCACCACUGCCAACACCUCUGUCUUGGGCUACCACAUUCCCAAGGm6ACACUGUGGUUUUUGUCAACCAGUGGUCUGUGAAUCAUGACCCACUGAAGUGGCCUAACCCGGAGAm6ACUUUGAUCCAGCUCGAUUCUUGGm6ACAAGGAUGGCCUCAUCAACAAGGm6ACCUGACCAGCAGAGUGAUGAUUUUUUCAGUGGGCAAAAGGCGGUGCAUUGGCGAAGAm6ACUUUCUAAGAUGCAGCUUUUUCUCUUCAUCUCCAUCCUGGCUCACCAGUGCGAUUUCAGGGCCAACCCAAAUGAGCCUGCGAAAAUGAm6AUUUCAGUUAUGGUCUAACCAUUAAACCCAAGUCAUUUAAAGUCAAUGUCACUCUCAGAGAGUCCAUGGAGCUCCUUGAUAGUGCUGUCCAAAAUUUACAAGCCAAGGAAACUUGCCAAUAAGAAGCAAGAGGCAAGCUGAAAUUUUAGAAAUAUUCACAUCUUCGGAGAUGAGGAGUAAAAUUCAGUUUUUUUCCAGUUCCUCUUUUGUGCUGCUUCUCAAUUAGCGUUUAAGGUGAGCAUAAAUCAACUGUCCAUCAGGUGAGGUGUGCUCCAUACCCAGCGGUUCUUCAUGAGUAGUGGGCUAUGCAGGAGCUUCUGGGAGAUUUUUUUGAGUCAAAGm6ACUUAAAGGGCCCAAUGAAUU
Sequence (MODOMICS CODE ENCODING) CCACUCACCGACCCCCAGUCUCAAUCUCAACGCUGUGAGGAAACCUCGACUUUGCCAGGUCCCCAAGGGCAGCGGGGCUCGGCGAGCGAGGCACCCUUCUCCGUCCCCAUCCCAAUCCAAGCGCUCCUGGCACUGACGACGCCAAGAG2000000006ACUCGAGUGGGAGUUAAAGCUUCCAGUGAGGGCAGCAGGUGUCCAGGCCGGGCCUGCGGGUUCCUGUUGACGUCUUGCCCUAGGCAAAGGUCCCAGUUCCUUCUCGGAGCCGGCUGUCCCGCGCCACUGGAAACCGCACCUCCCCGCAGGUCACAUGGGCACCAGCCUCAGCCCGAACGACCCUUGGCCGCUAAACCCGCUGUCCAUCCAGCAGACCACGCUCCUGCUACUCCUGUCGGUGCUGGCCACUGUGCAUGUGGGCCAGCGGCUGCUGAGGCAACGGAGGCGGCAGCUCCGGUCCGCGCCCCCGGGCCCGUUUGCGUGGCCACUGAUCGGAAACGCGGCGGCGGUGGGCCAGGCGGCUCACCUCUCGUUCGCUCGCCUGGCGCGGCGCUACGGCGACGUUUUCCAGAUCCGCCUGGGCAGCUGCCCCAUAGUGGUGCUGAAUGGCGAGCGCGCCAUCCACCAGGCCCUGGUGCAGCAGGGCUCGGCCUUCGCCGACCGGCCGGCCUUCGCCUCCUUCCGUGUGGUGUCCGGCGGCCGCAGCAUGGCUUUCGGCCACUACUCGGAGCACUGGAAGGUGCAGCGGCGCGCAGCCCACAGCAUGAUGCGCAACUUCUUCACGCGCCAGCCGCGCAGCCGCCAAGUCCUCGAGGGCCACGUGCUGAGCGAGGCGCGCGAGCUGGUGGCGCUGCUGGUGCGCGGCAGCGCGGACGGCGCCUUCCUCGACCCGAGGCCGCUGACCGUCGUGGCCGUGGCCAACGUCAUGAGUGCCGUGUGUUUCGGCUGCCGCUACAGCCACGACGACCCCGAGUUCCGUGAGCUGCUCAGCCACAACGAAGAGUUCGGGCGCACGGUGGGCGCGGGCAGCCUGGUGG2000000006ACGUGAUGCCCUGGCUGCAGUACUUCCCCAACCCGGUGCGCACCGUUUUCCGCGAAUUCGAGCAGCUCAACCGCAACUUCAGCAACUUCAUCCUGGACAAGUUCUUGAGGCACUGCGAAAGCCUUCGGCCCGGGGCCGCCCCCCGCGACAUGAUGG2000000006ACGCCUUUAUCCUCUCUGCGGAAAAGAAGGCGGCCGGGG2000000006ACUCGCACGGUGGUGGCGCGCGGCUGGAUUUGGAGAACGUACCGGCCACUAUCACUGACAUCUUCGGCGCCAGCCAGGACACCCUGUCCACCGCGCUGCAGUGGCUGCUCCUCCUCUUCACCAGGUAUCCUGAUGUGCAGACUCGAGUGCAGGCAGAAUUGGAUCAGGUCGUGGGGAGGG2000000006ACCGUCUGCCUUGUAUGGGUGACCAGCCCAACCUGCCCUAUGUCCUGGCCUUCCUUUAUGAAGCCAUGCGCUUCUCCAGCUUUGUGCCUGUCACUAUUCCUCAUGCCACCACUGCCAACACCUCUGUCUUGGGCUACCACAUUCCCAAGG2000000006ACACUGUGGUUUUUGUCAACCAGUGGUCUGUGAAUCAUGACCCACUGAAGUGGCCUAACCCGGAGA2000000006ACUUUGAUCCAGCUCGAUUCUUGG2000000006ACAAGGAUGGCCUCAUCAACAAGG2000000006ACCUGACCAGCAGAGUGAUGAUUUUUUCAGUGGGCAAAAGGCGGUGCAUUGGCGAAGA2000000006ACUUUCUAAGAUGCAGCUUUUUCUCUUCAUCUCCAUCCUGGCUCACCAGUGCGAUUUCAGGGCCAACCCAAAUGAGCCUGCGAAAAUGA2000000006AUUUCAGUUAUGGUCUAACCAUUAAACCCAAGUCAUUUAAAGUCAAUGUCACUCUCAGAGAGUCCAUGGAGCUCCUUGAUAGUGCUGUCCAAAAUUUACAAGCCAAGGAAACUUGCCAAUAAGAAGCAAGAGGCAAGCUGAAAUUUUAGAAAUAUUCACAUCUUCGGAGAUGAGGAGUAAAAUUCAGUUUUUUUCCAGUUCCUCUUUUGUGCUGCUUCUCAAUUAGCGUUUAAGGUGAGCAUAAAUCAACUGUCCAUCAGGUGAGGUGUGCUCCAUACCCAGCGGUUCUUCAUGAGUAGUGGGCUAUGCAGGAGCUUCUGGGAGAUUUUUUUGAGUCAAAG2000000006ACUUAAAGGGCCCAAUGAAUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 149 1027 1183 1222 1402 1552 1618 1642 1666 1724 1813 2154
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 2:38075928:- 2:38074664:- 2:38074508:- 2:38074469:- 2:38071254:- 2:38071104:- 2:38071038:- 2:38071014:- 2:38070990:- 2:38070932:- 2:38070843:- 2:38070502:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
6AyXsheySjfx
Ap2q43bQLNek
NjZ8bGGJsNSR
Q36pf44ZRvxu
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
WiQcrNTGZHPT
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
3TeAZFYFxgvp
Ap2q43bQLNek
gZuvgwMuBfgh
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
KTLz8piFYdwC
WiQcrNTGZHPT
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
D6ncpa2PPWj3
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
6AyXsheySjfx
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
D6ncpa2PPWj3
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
93arJtwJmuS9
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
Ap2q43bQLNek
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
3TeAZFYFxgvp
UN3tNpbCPHYf
aJksAshEgQ8U
8cMbzB4aD5Se
KTLz8piFYdwC
WiQcrNTGZHPT
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML