Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000409028
Gene ID: ENSG00000071082
Gene Name: RPL31
Sequence (UNICHARACTER ENCODING) CGCGCUCUUCCUUUCCAACUUGGACGCUGCAGAAUGGCUCCCGCAAAGAAGGGUGGCGAGAAGAAAAAGGGCCGUUCUGCCAUCAACGAAGUGGUAACCCGAGAAUACACCAUCAACAUUCACAAGCGCAUCCAUGGAGUGGGCUUCAAGAAGCGUGCACCUCGGGCACUCAAAGAGAUUCGGAAAUUUGCCAUGAAGGAGAUGGGAACUCCAGAUGUGCGCAUUGACACCAGGCUCAACAAAGCUGUCUGGGCCAAAGGAAUAAGGAAUGUGCCAUACCGAAUCCGUGUGCGGCUGUCCAGAAAACGUAAUGAGGAUGAAGAUUCACCAAAUAAGCUAUAUACUUUGGUUACCUAUGUACCUGUUACCACUUUCAAAAUUUCUGUGCUAAACAGUGUUACAGUCGCCAAGAGCCCAUAAAGGGAGCCCUCCUGGAAGUGGAUGAGGCCUUGGGUCUCGGCUCUUCAUUGCUUCCUGAGCUGCAGCAGAUGCCUPUACAACCAAGCUCACCGAGGACGUCUGUCUCCCAUAUUACCCUGGCAGAGGGCCAGGCCUGUUCUACACGGCCGGGGUUUCAACAAGGUACUGAUGUCUUCUGCCCUUGCCUCUUCGACAGGCAAGUAAUAAGЖCUUAAGUGAAGAGAAUUCUPUAGGCACACAAAUUCACAUUUGAUGUAAUCUCAUUAUACUUCCUGAUCUGUGAUUGAAAACUUUCAUUUCGUAACUAGUAUGUCUGUCCCACCUPUAAAAAGUUUUUCAUUAUGAAAGUAAGUAUUUGUUAGAAUUAAGUCUAUUUAAAUGAAAAAAACUUAGAUAUGAGUCUGCAUGGCCUCAGGAAAAUGAUGUUUUAAAAUAGAGAUUUUAGGUUGUCUGCACUCUAGCUUUUUUGUCGUUUUCUUAAGGCUUUUUUAACUGCAUCAAAAAUUCAGAUACGAAACAUACACUAAAAAAUAAUACAUCAUAUCUUAAUUUCCACUGAACUUGAUUUAAAUUCAGAGUUACACAGUAUGAAUAUCACAAUCAGAUAUGUUCAAAAAGGUCUGAACAAUUGAUUUUCUGAAACCAUGAAGGACUACAAAUGCUUCUAAUAAAUCAAUGUAAUUAAAAUGUC
Sequence (SHORT NAMES ENCODING) CGCGCUCUUCCUUUCCAACUUGGACGCUGCAGAAUGGCUCCCGCAAAGAAGGGUGGCGAGAAGAAAAAGGGCCGUUCUGCCAUCAACGAAGUGGUAACCCGAGAAUACACCAUCAACAUUCACAAGCGCAUCCAUGGAGUGGGCUUCAAGAAGCGUGCACCUCGGGCACUCAAAGAGAUUCGGAAAUUUGCCAUGAAGGAGAUGGGAACUCCAGAUGUGCGCAUUGACACCAGGCUCAACAAAGCUGUCUGGGCCAAAGGAAUAAGGAAUGUGCCAUACCGAAUCCGUGUGCGGCUGUCCAGAAAACGUAAUGAGGAUGAAGAUUCACCAAAUAAGCUAUAUACUUUGGUUACCUAUGUACCUGUUACCACUUUCAAAAUUUCUGUGCUAAACAGUGUUACAGUCGCCAAGAGCCCAUAAAGGGAGCCCUCCUGGAAGUGGAUGAGGCCUUGGGUCUCGGCUCUUCAUUGCUUCCUGAGCUGCAGCAGAUGCCUYUACAACCAAGCUCACCGAGGACGUCUGUCUCCCAUAUUACCCUGGCAGAGGGCCAGGCCUGUUCUACACGGCCGGGGUUUCAACAAGGUACUGAUGUCUUCUGCCCUUGCCUCUUCGACAGGCAAGUAAUAAGm6ACUUAAGUGAAGAGAAUUCUYUAGGCACACAAAUUCACAUUUGAUGUAAUCUCAUUAUACUUCCUGAUCUGUGAUUGAAAACUUUCAUUUCGUAACUAGUAUGUCUGUCCCACCUYUAAAAAGUUUUUCAUUAUGAAAGUAAGUAUUUGUUAGAAUUAAGUCUAUUUAAAUGAAAAAAACUUAGAUAUGAGUCUGCAUGGCCUCAGGAAAAUGAUGUUUUAAAAUAGAGAUUUUAGGUUGUCUGCACUCUAGCUUUUUUGUCGUUUUCUUAAGGCUUUUUUAACUGCAUCAAAAAUUCAGAUACGAAACAUACACUAAAAAAUAAUACAUCAUAUCUUAAUUUCCACUGAACUUGAUUUAAAUUCAGAGUUACACAGUAUGAAUAUCACAAUCAGAUAUGUUCAAAAAGGUCUGAACAAUUGAUUUUCUGAAACCAUGAAGGACUACAAAUGCUUCUAAUAAAUCAAUGUAAUUAAAAUGUC
Sequence (MODOMICS CODE ENCODING) CGCGCUCUUCCUUUCCAACUUGGACGCUGCAGAAUGGCUCCCGCAAAGAAGGGUGGCGAGAAGAAAAAGGGCCGUUCUGCCAUCAACGAAGUGGUAACCCGAGAAUACACCAUCAACAUUCACAAGCGCAUCCAUGGAGUGGGCUUCAAGAAGCGUGCACCUCGGGCACUCAAAGAGAUUCGGAAAUUUGCCAUGAAGGAGAUGGGAACUCCAGAUGUGCGCAUUGACACCAGGCUCAACAAAGCUGUCUGGGCCAAAGGAAUAAGGAAUGUGCCAUACCGAAUCCGUGUGCGGCUGUCCAGAAAACGUAAUGAGGAUGAAGAUUCACCAAAUAAGCUAUAUACUUUGGUUACCUAUGUACCUGUUACCACUUUCAAAAUUUCUGUGCUAAACAGUGUUACAGUCGCCAAGAGCCCAUAAAGGGAGCCCUCCUGGAAGUGGAUGAGGCCUUGGGUCUCGGCUCUUCAUUGCUUCCUGAGCUGCAGCAGAUGCCU2000000009UUACAACCAAGCUCACCGAGGACGUCUGUCUCCCAUAUUACCCUGGCAGAGGGCCAGGCCUGUUCUACACGGCCGGGGUUUCAACAAGGUACUGAUGUCUUCUGCCCUUGCCUCUUCGACAGGCAAGUAAUAAG2000000006ACUUAAGUGAAGAGAAUUCU2000000009UUAGGCACACAAAUUCACAUUUGAUGUAAUCUCAUUAUACUUCCUGAUCUGUGAUUGAAAACUUUCAUUUCGUAACUAGUAUGUCUGUCCCACCU2000000009UUAAAAAGUUUUUCAUUAUGAAAGUAAGUAUUUGUUAGAAUUAAGUCUAUUUAAAUGAAAAAAACUUAGAUAUGAGUCUGCAUGGCCUCAGGAAAAUGAUGUUUUAAAAUAGAGAUUUUAGGUUGUCUGCACUCUAGCUUUUUUGUCGUUUUCUUAAGGCUUUUUUAACUGCAUCAAAAAUUCAGAUACGAAACAUACACUAAAAAAUAAUACAUCAUAUCUUAAUUUCCACUGAACUUGAUUUAAAUUCAGAGUUACACAGUAUGAAUAUCACAAUCAGAUAUGUUCAAAAAGGUCUGAACAAUUGAUUUUCUGAAACCAUGAAGGACUACAAAUGCUUCUAAUAAAUCAAUGUAAUUAAAAUGUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 495 629 649 744
Modification Positions Y m6A Y Y
Genomic Coordinates 2:101019113:+ 2:101019247:+ 2:101019267:+ 2:101019362:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
4HMi5ykupT9V
6UuHp6YApVKv
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
nfCHyrYzE6fB
BtsJQJ3DteUq
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8