General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000409955
Gene ID:	ENSG00000144231
Gene Name:	POLR2D
Sequence (UNICHARACTER ENCODING)	CGCGGCGCGGCGCGGCGAUGGCGGCGGGUGGCAGCGAUCCGCGGGCUGGCGACGUAGAGGAGGACGCCUCACAGCUCAUCUUUCCUAAAGAGUUUGAAACAGCUGAGACACUUCUAAAUUCAGAAGUUCAUAUGCUUCUGGAACAUCGAAAGCAGCAGAAUGAGAGUGCAGAGGACGAACAGGAGCUCUCAGAAGUCUUCAUGAAAACAUUAAACUACACAGCCCGUUUCAGUCGUUUCAAAAACAGAGAGACCAUUGCCAGUGUUCGUAGCUUGGAGGGACGGUUUGAAGAUGAGGAGCUGCAGCAGAUUCUUGAUGAUAUCCAGACAAAGCGCAGCUUUCAGUAUUAAUCUCCAAACAUCACUGCUGCUCGGAGAAACCACAPCCCCAGGCAUAЖCACCACCUUCCCACUGUCUGGGGCUGЖCUUGCACAGAAAUUCUGUUGAAGЖCAGUUGAGAAUUCCUUUGGAGAAAACAGCCCAGCUUGGCGUGGGGUUAGGUUGCUGUUUCAAAUAЖCUCACAGGCCCAGGUGACAUGGAAUCUUGGAGCAGCCUUGUGCAGUGGCAGCCAGUGGCUUCCUGAACGUGCCUCUGCGAAGUGUGAGAUGAGGGGUCACAPAACCACACUGUUGACUACCUCAUUCCUGGUUUUUGGCCUCCACAUCAUCUUUUUUCUUAAUAUUUCAUGUUUUAAUUUCAGGGUGUUUAUACUUUUUGAAACUAGЖCCAGAAGAUAGUAGACUPUAUAGAGAAAGACCAGUUUUACCUAGAUACUAAAGGAAGAAUUAAACCGCUGUUAGUUUGAAAUGCUUUUUUUUUUUUUUUUUAAAUGGAGAUAGGGUCUUAЖCUCUUGUCCAGGCUGGAGGAGUGCAGUCGUACAGUCAUGGCUCACUGAAGUCUUGACCCCGCUGCCUCAGCCUCCCAAAUAЖCUGGGGCCACAGGUGUGCACCACAACUCUCAGCUAAUUUUUAAAAUUUUUUAUAGAGGUGGGGUUUUACUAUGCUGUCCAGACUGGUCUUAAACUCCUGGGCUCAAGUGAUCCCCCUGCCUUGGCCUCCCAAACUGGUGAGAUUACAGGCAUGAGCCACCACAACUGGCCUGAAAUUCUUAAAGGAUGGGAGUGUCGAUGACAGCACCUUGGCAUCGUUGUGCCUAACCUGGGAGACGGAAGAAGCACGCCAUGGGAAGUGUUUACACUUGGGGACAAGUGCUAAGUAUUGUGGAGCCCAUAGCCCCUUGAGAUAGAUGGCUACUUUGCCUUUCUUCUUGAЖCUGUCUUGCAGAAUGUGGЖUUUGGGGUAAGUGGUCUUGAAGGAUUCAUUUAGUCACCCUCAAAUUAAGAUUUUUACUUCAUCUUUCUUGGGCCUGCACCPCCAAGAUAACAAAGAAGAAGCAAUGGUCGUGCCAAAGAGGUCCACAACCAGGUGUGCACUGUUCACUGCAGCCCAUUUGCUGUAUGAЖCUGUGGUUGUUGUGUGCCCAAUGACAAGGCUACUAAGAAAUUCAUCAUUUGAAACGUAGAGGCCGCAGCAGUCAGCGAUGUUUCUGAAAUGAGCAPCCUUGACGCCUGUGUACUUCCCAGGCUGGAUGUGAAGCUACAUUACCAUGUGAGUUGUGCCAUUCACAGCACAGUGGUGAGGAAUUGAGCUCAUGAAGCAGGCAAGGЖCCGAACACCUCCACCCCAACGUAGACCUGCAGGUGCUGCCCCAUGACCUCCACCAAAGCCCAUAUAAGGAGCGGAGUUGUUAAGGЖCUGAAGAAAAACU
Sequence (SHORT NAMES ENCODING)	CGCGGCGCGGCGCGGCGAUGGCGGCGGGUGGCAGCGAUCCGCGGGCUGGCGACGUAGAGGAGGACGCCUCACAGCUCAUCUUUCCUAAAGAGUUUGAAACAGCUGAGACACUUCUAAAUUCAGAAGUUCAUAUGCUUCUGGAACAUCGAAAGCAGCAGAAUGAGAGUGCAGAGGACGAACAGGAGCUCUCAGAAGUCUUCAUGAAAACAUUAAACUACACAGCCCGUUUCAGUCGUUUCAAAAACAGAGAGACCAUUGCCAGUGUUCGUAGCUUGGAGGGACGGUUUGAAGAUGAGGAGCUGCAGCAGAUUCUUGAUGAUAUCCAGACAAAGCGCAGCUUUCAGUAUUAAUCUCCAAACAUCACUGCUGCUCGGAGAAACCACAYCCCCAGGCAUAm6ACACCACCUUCCCACUGUCUGGGGCUGm6ACUUGCACAGAAAUUCUGUUGAAGm6ACAGUUGAGAAUUCCUUUGGAGAAAACAGCCCAGCUUGGCGUGGGGUUAGGUUGCUGUUUCAAAUAm6ACUCACAGGCCCAGGUGACAUGGAAUCUUGGAGCAGCCUUGUGCAGUGGCAGCCAGUGGCUUCCUGAACGUGCCUCUGCGAAGUGUGAGAUGAGGGGUCACAYAACCACACUGUUGACUACCUCAUUCCUGGUUUUUGGCCUCCACAUCAUCUUUUUUCUUAAUAUUUCAUGUUUUAAUUUCAGGGUGUUUAUACUUUUUGAAACUAGm6ACCAGAAGAUAGUAGACUYUAUAGAGAAAGACCAGUUUUACCUAGAUACUAAAGGAAGAAUUAAACCGCUGUUAGUUUGAAAUGCUUUUUUUUUUUUUUUUUAAAUGGAGAUAGGGUCUUAm6ACUCUUGUCCAGGCUGGAGGAGUGCAGUCGUACAGUCAUGGCUCACUGAAGUCUUGACCCCGCUGCCUCAGCCUCCCAAAUAm6ACUGGGGCCACAGGUGUGCACCACAACUCUCAGCUAAUUUUUAAAAUUUUUUAUAGAGGUGGGGUUUUACUAUGCUGUCCAGACUGGUCUUAAACUCCUGGGCUCAAGUGAUCCCCCUGCCUUGGCCUCCCAAACUGGUGAGAUUACAGGCAUGAGCCACCACAACUGGCCUGAAAUUCUUAAAGGAUGGGAGUGUCGAUGACAGCACCUUGGCAUCGUUGUGCCUAACCUGGGAGACGGAAGAAGCACGCCAUGGGAAGUGUUUACACUUGGGGACAAGUGCUAAGUAUUGUGGAGCCCAUAGCCCCUUGAGAUAGAUGGCUACUUUGCCUUUCUUCUUGAm6ACUGUCUUGCAGAAUGUGGm6AUUUGGGGUAAGUGGUCUUGAAGGAUUCAUUUAGUCACCCUCAAAUUAAGAUUUUUACUUCAUCUUUCUUGGGCCUGCACCYCCAAGAUAACAAAGAAGAAGCAAUGGUCGUGCCAAAGAGGUCCACAACCAGGUGUGCACUGUUCACUGCAGCCCAUUUGCUGUAUGAm6ACUGUGGUUGUUGUGUGCCCAAUGACAAGGCUACUAAGAAAUUCAUCAUUUGAAACGUAGAGGCCGCAGCAGUCAGCGAUGUUUCUGAAAUGAGCAYCCUUGACGCCUGUGUACUUCCCAGGCUGGAUGUGAAGCUACAUUACCAUGUGAGUUGUGCCAUUCACAGCACAGUGGUGAGGAAUUGAGCUCAUGAAGCAGGCAAGGm6ACCGAACACCUCCACCCCAACGUAGACCUGCAGGUGCUGCCCCAUGACCUCCACCAAAGCCCAUAUAAGGAGCGGAGUUGUUAAGGm6ACUGAAGAAAAACU
Sequence (MODOMICS CODE ENCODING)	CGCGGCGCGGCGCGGCGAUGGCGGCGGGUGGCAGCGAUCCGCGGGCUGGCGACGUAGAGGAGGACGCCUCACAGCUCAUCUUUCCUAAAGAGUUUGAAACAGCUGAGACACUUCUAAAUUCAGAAGUUCAUAUGCUUCUGGAACAUCGAAAGCAGCAGAAUGAGAGUGCAGAGGACGAACAGGAGCUCUCAGAAGUCUUCAUGAAAACAUUAAACUACACAGCCCGUUUCAGUCGUUUCAAAAACAGAGAGACCAUUGCCAGUGUUCGUAGCUUGGAGGGACGGUUUGAAGAUGAGGAGCUGCAGCAGAUUCUUGAUGAUAUCCAGACAAAGCGCAGCUUUCAGUAUUAAUCUCCAAACAUCACUGCUGCUCGGAGAAACCACA2000000009UCCCCAGGCAUA2000000006ACACCACCUUCCCACUGUCUGGGGCUG2000000006ACUUGCACAGAAAUUCUGUUGAAG2000000006ACAGUUGAGAAUUCCUUUGGAGAAAACAGCCCAGCUUGGCGUGGGGUUAGGUUGCUGUUUCAAAUA2000000006ACUCACAGGCCCAGGUGACAUGGAAUCUUGGAGCAGCCUUGUGCAGUGGCAGCCAGUGGCUUCCUGAACGUGCCUCUGCGAAGUGUGAGAUGAGGGGUCACA2000000009UAACCACACUGUUGACUACCUCAUUCCUGGUUUUUGGCCUCCACAUCAUCUUUUUUCUUAAUAUUUCAUGUUUUAAUUUCAGGGUGUUUAUACUUUUUGAAACUAG2000000006ACCAGAAGAUAGUAGACU2000000009UUAUAGAGAAAGACCAGUUUUACCUAGAUACUAAAGGAAGAAUUAAACCGCUGUUAGUUUGAAAUGCUUUUUUUUUUUUUUUUUAAAUGGAGAUAGGGUCUUA2000000006ACUCUUGUCCAGGCUGGAGGAGUGCAGUCGUACAGUCAUGGCUCACUGAAGUCUUGACCCCGCUGCCUCAGCCUCCCAAAUA2000000006ACUGGGGCCACAGGUGUGCACCACAACUCUCAGCUAAUUUUUAAAAUUUUUUAUAGAGGUGGGGUUUUACUAUGCUGUCCAGACUGGUCUUAAACUCCUGGGCUCAAGUGAUCCCCCUGCCUUGGCCUCCCAAACUGGUGAGAUUACAGGCAUGAGCCACCACAACUGGCCUGAAAUUCUUAAAGGAUGGGAGUGUCGAUGACAGCACCUUGGCAUCGUUGUGCCUAACCUGGGAGACGGAAGAAGCACGCCAUGGGAAGUGUUUACACUUGGGGACAAGUGCUAAGUAUUGUGGAGCCCAUAGCCCCUUGAGAUAGAUGGCUACUUUGCCUUUCUUCUUGA2000000006ACUGUCUUGCAGAAUGUGG2000000006AUUUGGGGUAAGUGGUCUUGAAGGAUUCAUUUAGUCACCCUCAAAUUAAGAUUUUUACUUCAUCUUUCUUGGGCCUGCACC2000000009UCCAAGAUAACAAAGAAGAAGCAAUGGUCGUGCCAAAGAGGUCCACAACCAGGUGUGCACUGUUCACUGCAGCCCAUUUGCUGUAUGA2000000006ACUGUGGUUGUUGUGUGCCCAAUGACAAGGCUACUAAGAAAUUCAUCAUUUGAAACGUAGAGGCCGCAGCAGUCAGCGAUGUUUCUGAAAUGAGCA2000000009UCCUUGACGCCUGUGUACUUCCCAGGCUGGAUGUGAAGCUACAUUACCAUGUGAGUUGUGCCAUUCACAGCACAGUGGUGAGGAAUUGAGCUCAUGAAGCAGGCAAGG2000000006ACCGAACACCUCCACCCCAACGUAGACCUGCAGGUGCUGCCCCAUGACCUCCACCAAAGCCCAUAUAAGGAGCGGAGUUGUUAAGG2000000006ACUGAAGAAAAACU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	385	397	424	448	514	616	722	740	843	925	1267	1286	1367	1455	1551	1659	1745
Modification Positions	Y	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A	m6A	m6A	m6A	Y	m6A	Y	m6A	m6A
Genomic Coordinates	2:127848072:-	2:127848060:-	2:127848033:-	2:127848009:-	2:127847943:-	2:127847841:-	2:127847735:-	2:127847717:-	2:127847614:-	2:127847532:-	2:127847190:-	2:127847171:-	2:127847090:-	2:127847002:-	2:127846906:-	2:127846798:-	2:127846712:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 nfCHyrYzE6fB KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	nfCHyrYzE6fB BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe Q36pf44ZRvxu UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8