General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000313173
Gene ID:	ENSG00000175879
Gene Name:	HOXD8
Sequence (UNICHARACTER ENCODING)	CUCCGCGGGGCUCCUCGUCCCCGUCACGCUGACUUUCCGUGCAGUGCUGUGGUGCGAAAAUGCCUCGCCGGUGCGCACCGGGUCGGCAGCCUCGGCGGCGGGGGCGAGAUUGGCGGGAGGGGGGCGCGGGGGGGGCGCGGUAAGAGGUGGCGGCGGGCAGAGGGUGUUUUUUUUCUUUUCCCUCCAGAGCCGGGGUUUGUAAACCGAGGCCAGAGUGUCCCCGUGGGCCGAGCGCACUUUUUUCUUGUCCGGGUGCGCUCAGUCACUGGUGCCUGAGAGGAAACAGUGGAGGCAGCGGGGCAGGUCGCCUGGGGCGUCGGCGAUUAUAUUGCGGCCGAGCCGGGGCGCGCCGGGAAAGGCCGGGAGGGCGGCGGCGCGCGGGGGCUGGGCGAGGCCCCGCGACCCGCGAGGGAGGCGGCGCGAAGCCGAGGCGGCGGGCGCAAGAGCCGGGCAUGAGCGCCCAGUAGCUGAGCGCCCGCGGCUGCCUGGCCUCAGAAGCGACGCGCGAGCGCGGGCGGGCGGCAGCAGCGACGUAGCCCGGCGGUCCCGGCGGCGAGAGCAGCCGCCCCACAGGCCCCCGCGGCAGUGCGGCCGAGUCGAGGCUCGCUCUCUGGCUGCUUAGCGCCGCCCGCCCGCCCGGGGCCGCCGCCGCUGACGCCCCAAUGAGUUCGUACUUCGUGAACCCGCUGUACUCCAAGUACAAGGCGGCGGCUGCGGCGGCGGCGGCGGCGGGCGAGGCCAUCAAUCCCACUUACUACGACUGUCACUUCGCGCCCGAGGUCGGCGGCCGUCACGCCGCCGCCGCAGCAGCCCUGCAGCUCUAUGGCAACAGCGCCGCCGGCUUCCCGCACGCGCCCCCGCAGGCGCACGCGCACCCGCACCCGUCCCCGCCGCCCUCCGGGЖCUGGGUGCGGCGGUAGGGAAGGCCGGGGCCAGGAGUACUUCCACCCCGGCGGGGGCAGCCCGGCCGCUGCCUACCAGGCCGCCCCCCCUCCUCCUCCGCAUCCUCCGCCUCCGCCGCCACCUCCCCCCUGCGGCGGGAUUGCCUGUCACGGGGAGCCCGCGAAGUUUUACGGAUACGAUAACUUACAGAGЖCAGCCGAUUUUUACGACCCAGCAAGAGGCCGAGCUGGUACAAUAUCCUGЖCUGUAAAUCGUCCAGUGGUAAUAUUGGCGAGGACCCAGACCACUUAAAUCAGAGCUCGUCUCCUUCUCAAAUGUUUCCGUGGAUGAGACCACAAGCAGCUCCUGGUAGACGAAGAGGAAGACAAACCUACAGUCGCUUCCAAACUCUAGAGUUGGAAAAGGAAUUUCUUUUUAACCCCUAUCUGACCAGGAAAAGAAGAAUCGAGGUUUCCCACGCCCUAGCCCUCACCGAGAGЖCAGGUAAAAAUCUGGUUCCAGAACAGGAGAAUGAAAUGGAAAAAGGAAAACAACAAGGЖCAAAUUUCCCGUUUCCCGGCAGGAGGUGAAGGACGGGGAAACGAAAAAGGAAGCCCAAGAGCUGGAGGAAGACAGAGCCGAAGGCCUGACAAAUUAACUUCUACCUPUAAAAUUUACCACAGЖCUAUUAAAACUAAUAAUCACCAUAUGCUGUGGЖCACCACCUAUUUUCUUUGUUGGAAAGGЖCCUUACCUGUGUUUCAAGCUACCUUCAUGUCACUGCUCUUGAGGUUUUCUGUGCUUUGAGAGGGAUUUGGGUGUUUAAAAAAGUUUCUAGUAUCACAUAGAAGCUGUCCUUGAGCUGUCCUAUGGAAGGGUAAUUUGAUACUGACCUUGUAGCUAUAUUUUUAUAAUGGUUUUUAAUGUCUGAGCUAGUGAUUUGCCUCAACAACGUAAACUUCCUAAUGAUUAGCACUUAAUAAUUGCAUAUAAAAUGCUUUAUUAAUUAAЖCAAGUGCACUUGAACAUUUUAAUAUUUGUGGUGAGUAAAUUAAAAGGAGUUUAUUAAUUAAAAAAAAUUAUGUCUGCAGAAUACUUUAUAUUAUUUGAUUACAAUGUAUUAUUUAUGGAUUUUUUAUUCUUUCCUUUAUAAUGAAUAGUUCGGGUGCGUUUUGUUUACUCCUAAAAGGUUUCUUUGCGUAUUUUCUAAAUGUAAUAUCUCGGGGAAAAUAUUAGAAAAGCACGUAUUAGCUGAAGAAUGUAACUUGUAGUCCAGCUCUGCAGCUUCCUUAAACUUAAGAAAAAGAUUGGGCCAGUGACAAGAAUUUAAAGACAAUGUCCAAGUUGACAAUUAUUUUUCUAUAGUCCAUACAAAUUAAAUAAUCUGGCAACUCUGGCAAAUCGCCUUGUAAAAUGCGUCUCAUUUUUUAACUUGCUUUCGUUUUGAACCGCCCUUGUAAUCGCCUGAAAUCGCUAGUUCUUUAUGCGGUGGCUGCCGCUGUGUUCCGUUAUUUUCAGUAGGUGUCAUAUUUAUUUGUAUUGCCUUUGUUCUGUUCGCCGCUGGUUUUAAACCAGCUUGCUGUGUGCAUCUCAGACGUCGGUUGGUACGUCCUCCGCUGUUCUUCAGGAAAGCGAUAGCCUCACCUAUUUGAAACAAGCCCUGAGAGGAAACGCAGAAAAACCUGAGUGUAAACAACUCCGGAAUGUCGCUAGCUCCUUAGUAAAUAAAUGAAUCUCUUUCUGGA
Sequence (SHORT NAMES ENCODING)	CUCCGCGGGGCUCCUCGUCCCCGUCACGCUGACUUUCCGUGCAGUGCUGUGGUGCGAAAAUGCCUCGCCGGUGCGCACCGGGUCGGCAGCCUCGGCGGCGGGGGCGAGAUUGGCGGGAGGGGGGCGCGGGGGGGGCGCGGUAAGAGGUGGCGGCGGGCAGAGGGUGUUUUUUUUCUUUUCCCUCCAGAGCCGGGGUUUGUAAACCGAGGCCAGAGUGUCCCCGUGGGCCGAGCGCACUUUUUUCUUGUCCGGGUGCGCUCAGUCACUGGUGCCUGAGAGGAAACAGUGGAGGCAGCGGGGCAGGUCGCCUGGGGCGUCGGCGAUUAUAUUGCGGCCGAGCCGGGGCGCGCCGGGAAAGGCCGGGAGGGCGGCGGCGCGCGGGGGCUGGGCGAGGCCCCGCGACCCGCGAGGGAGGCGGCGCGAAGCCGAGGCGGCGGGCGCAAGAGCCGGGCAUGAGCGCCCAGUAGCUGAGCGCCCGCGGCUGCCUGGCCUCAGAAGCGACGCGCGAGCGCGGGCGGGCGGCAGCAGCGACGUAGCCCGGCGGUCCCGGCGGCGAGAGCAGCCGCCCCACAGGCCCCCGCGGCAGUGCGGCCGAGUCGAGGCUCGCUCUCUGGCUGCUUAGCGCCGCCCGCCCGCCCGGGGCCGCCGCCGCUGACGCCCCAAUGAGUUCGUACUUCGUGAACCCGCUGUACUCCAAGUACAAGGCGGCGGCUGCGGCGGCGGCGGCGGCGGGCGAGGCCAUCAAUCCCACUUACUACGACUGUCACUUCGCGCCCGAGGUCGGCGGCCGUCACGCCGCCGCCGCAGCAGCCCUGCAGCUCUAUGGCAACAGCGCCGCCGGCUUCCCGCACGCGCCCCCGCAGGCGCACGCGCACCCGCACCCGUCCCCGCCGCCCUCCGGGm6ACUGGGUGCGGCGGUAGGGAAGGCCGGGGCCAGGAGUACUUCCACCCCGGCGGGGGCAGCCCGGCCGCUGCCUACCAGGCCGCCCCCCCUCCUCCUCCGCAUCCUCCGCCUCCGCCGCCACCUCCCCCCUGCGGCGGGAUUGCCUGUCACGGGGAGCCCGCGAAGUUUUACGGAUACGAUAACUUACAGAGm6ACAGCCGAUUUUUACGACCCAGCAAGAGGCCGAGCUGGUACAAUAUCCUGm6ACUGUAAAUCGUCCAGUGGUAAUAUUGGCGAGGACCCAGACCACUUAAAUCAGAGCUCGUCUCCUUCUCAAAUGUUUCCGUGGAUGAGACCACAAGCAGCUCCUGGUAGACGAAGAGGAAGACAAACCUACAGUCGCUUCCAAACUCUAGAGUUGGAAAAGGAAUUUCUUUUUAACCCCUAUCUGACCAGGAAAAGAAGAAUCGAGGUUUCCCACGCCCUAGCCCUCACCGAGAGm6ACAGGUAAAAAUCUGGUUCCAGAACAGGAGAAUGAAAUGGAAAAAGGAAAACAACAAGGm6ACAAAUUUCCCGUUUCCCGGCAGGAGGUGAAGGACGGGGAAACGAAAAAGGAAGCCCAAGAGCUGGAGGAAGACAGAGCCGAAGGCCUGACAAAUUAACUUCUACCUYUAAAAUUUACCACAGm6ACUAUUAAAACUAAUAAUCACCAUAUGCUGUGGm6ACACCACCUAUUUUCUUUGUUGGAAAGGm6ACCUUACCUGUGUUUCAAGCUACCUUCAUGUCACUGCUCUUGAGGUUUUCUGUGCUUUGAGAGGGAUUUGGGUGUUUAAAAAAGUUUCUAGUAUCACAUAGAAGCUGUCCUUGAGCUGUCCUAUGGAAGGGUAAUUUGAUACUGACCUUGUAGCUAUAUUUUUAUAAUGGUUUUUAAUGUCUGAGCUAGUGAUUUGCCUCAACAACGUAAACUUCCUAAUGAUUAGCACUUAAUAAUUGCAUAUAAAAUGCUUUAUUAAUUAAm6ACAAGUGCACUUGAACAUUUUAAUAUUUGUGGUGAGUAAAUUAAAAGGAGUUUAUUAAUUAAAAAAAAUUAUGUCUGCAGAAUACUUUAUAUUAUUUGAUUACAAUGUAUUAUUUAUGGAUUUUUUAUUCUUUCCUUUAUAAUGAAUAGUUCGGGUGCGUUUUGUUUACUCCUAAAAGGUUUCUUUGCGUAUUUUCUAAAUGUAAUAUCUCGGGGAAAAUAUUAGAAAAGCACGUAUUAGCUGAAGAAUGUAACUUGUAGUCCAGCUCUGCAGCUUCCUUAAACUUAAGAAAAAGAUUGGGCCAGUGACAAGAAUUUAAAGACAAUGUCCAAGUUGACAAUUAUUUUUCUAUAGUCCAUACAAAUUAAAUAAUCUGGCAACUCUGGCAAAUCGCCUUGUAAAAUGCGUCUCAUUUUUUAACUUGCUUUCGUUUUGAACCGCCCUUGUAAUCGCCUGAAAUCGCUAGUUCUUUAUGCGGUGGCUGCCGCUGUGUUCCGUUAUUUUCAGUAGGUGUCAUAUUUAUUUGUAUUGCCUUUGUUCUGUUCGCCGCUGGUUUUAAACCAGCUUGCUGUGUGCAUCUCAGACGUCGGUUGGUACGUCCUCCGCUGUUCUUCAGGAAAGCGAUAGCCUCACCUAUUUGAAACAAGCCCUGAGAGGAAACGCAGAAAAACCUGAGUGUAAACAACUCCGGAAUGUCGCUAGCUCCUUAGUAAAUAAAUGAAUCUCUUUCUGGA
Sequence (MODOMICS CODE ENCODING)	CUCCGCGGGGCUCCUCGUCCCCGUCACGCUGACUUUCCGUGCAGUGCUGUGGUGCGAAAAUGCCUCGCCGGUGCGCACCGGGUCGGCAGCCUCGGCGGCGGGGGCGAGAUUGGCGGGAGGGGGGCGCGGGGGGGGCGCGGUAAGAGGUGGCGGCGGGCAGAGGGUGUUUUUUUUCUUUUCCCUCCAGAGCCGGGGUUUGUAAACCGAGGCCAGAGUGUCCCCGUGGGCCGAGCGCACUUUUUUCUUGUCCGGGUGCGCUCAGUCACUGGUGCCUGAGAGGAAACAGUGGAGGCAGCGGGGCAGGUCGCCUGGGGCGUCGGCGAUUAUAUUGCGGCCGAGCCGGGGCGCGCCGGGAAAGGCCGGGAGGGCGGCGGCGCGCGGGGGCUGGGCGAGGCCCCGCGACCCGCGAGGGAGGCGGCGCGAAGCCGAGGCGGCGGGCGCAAGAGCCGGGCAUGAGCGCCCAGUAGCUGAGCGCCCGCGGCUGCCUGGCCUCAGAAGCGACGCGCGAGCGCGGGCGGGCGGCAGCAGCGACGUAGCCCGGCGGUCCCGGCGGCGAGAGCAGCCGCCCCACAGGCCCCCGCGGCAGUGCGGCCGAGUCGAGGCUCGCUCUCUGGCUGCUUAGCGCCGCCCGCCCGCCCGGGGCCGCCGCCGCUGACGCCCCAAUGAGUUCGUACUUCGUGAACCCGCUGUACUCCAAGUACAAGGCGGCGGCUGCGGCGGCGGCGGCGGCGGGCGAGGCCAUCAAUCCCACUUACUACGACUGUCACUUCGCGCCCGAGGUCGGCGGCCGUCACGCCGCCGCCGCAGCAGCCCUGCAGCUCUAUGGCAACAGCGCCGCCGGCUUCCCGCACGCGCCCCCGCAGGCGCACGCGCACCCGCACCCGUCCCCGCCGCCCUCCGGG2000000006ACUGGGUGCGGCGGUAGGGAAGGCCGGGGCCAGGAGUACUUCCACCCCGGCGGGGGCAGCCCGGCCGCUGCCUACCAGGCCGCCCCCCCUCCUCCUCCGCAUCCUCCGCCUCCGCCGCCACCUCCCCCCUGCGGCGGGAUUGCCUGUCACGGGGAGCCCGCGAAGUUUUACGGAUACGAUAACUUACAGAG2000000006ACAGCCGAUUUUUACGACCCAGCAAGAGGCCGAGCUGGUACAAUAUCCUG2000000006ACUGUAAAUCGUCCAGUGGUAAUAUUGGCGAGGACCCAGACCACUUAAAUCAGAGCUCGUCUCCUUCUCAAAUGUUUCCGUGGAUGAGACCACAAGCAGCUCCUGGUAGACGAAGAGGAAGACAAACCUACAGUCGCUUCCAAACUCUAGAGUUGGAAAAGGAAUUUCUUUUUAACCCCUAUCUGACCAGGAAAAGAAGAAUCGAGGUUUCCCACGCCCUAGCCCUCACCGAGAG2000000006ACAGGUAAAAAUCUGGUUCCAGAACAGGAGAAUGAAAUGGAAAAAGGAAAACAACAAGG2000000006ACAAAUUUCCCGUUUCCCGGCAGGAGGUGAAGGACGGGGAAACGAAAAAGGAAGCCCAAGAGCUGGAGGAAGACAGAGCCGAAGGCCUGACAAAUUAACUUCUACCU2000000009UUAAAAUUUACCACAG2000000006ACUAUUAAAACUAAUAAUCACCAUAUGCUGUGG2000000006ACACCACCUAUUUUCUUUGUUGGAAAGG2000000006ACCUUACCUGUGUUUCAAGCUACCUUCAUGUCACUGCUCUUGAGGUUUUCUGUGCUUUGAGAGGGAUUUGGGUGUUUAAAAAAGUUUCUAGUAUCACAUAGAAGCUGUCCUUGAGCUGUCCUAUGGAAGGGUAAUUUGAUACUGACCUUGUAGCUAUAUUUUUAUAAUGGUUUUUAAUGUCUGAGCUAGUGAUUUGCCUCAACAACGUAAACUUCCUAAUGAUUAGCACUUAAUAAUUGCAUAUAAAAUGCUUUAUUAAUUAA2000000006ACAAGUGCACUUGAACAUUUUAAUAUUUGUGGUGAGUAAAUUAAAAGGAGUUUAUUAAUUAAAAAAAAUUAUGUCUGCAGAAUACUUUAUAUUAUUUGAUUACAAUGUAUUAUUUAUGGAUUUUUUAUUCUUUCCUUUAUAAUGAAUAGUUCGGGUGCGUUUUGUUUACUCCUAAAAGGUUUCUUUGCGUAUUUUCUAAAUGUAAUAUCUCGGGGAAAAUAUUAGAAAAGCACGUAUUAGCUGAAGAAUGUAACUUGUAGUCCAGCUCUGCAGCUUCCUUAAACUUAAGAAAAAGAUUGGGCCAGUGACAAGAAUUUAAAGACAAUGUCCAAGUUGACAAUUAUUUUUCUAUAGUCCAUACAAAUUAAAUAAUCUGGCAACUCUGGCAAAUCGCCUUGUAAAAUGCGUCUCAUUUUUUAACUUGCUUUCGUUUUGAACCGCCCUUGUAAUCGCCUGAAAUCGCUAGUUCUUUAUGCGGUGGCUGCCGCUGUGUUCCGUUAUUUUCAGUAGGUGUCAUAUUUAUUUGUAUUGCCUUUGUUCUGUUCGCCGCUGGUUUUAAACCAGCUUGCUGUGUGCAUCUCAGACGUCGGUUGGUACGUCCUCCGCUGUUCUUCAGGAAAGCGAUAGCCUCACCUAUUUGAAACAAGCCCUGAGAGGAAACGCAGAAAAACCUGAGUGUAAACAACUCCGGAAUGUCGCUAGCUCCUUAGUAAAUAAAUGAAUCUCUUUCUGGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	903	1094	1144	1379	1438	1545	1561	1594	1622	1885
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	2:176130607:+	2:176130798:+	2:176130848:+	2:176131456:+	2:176131515:+	2:176131622:+	2:176131638:+	2:176131671:+	2:176131699:+	2:176131962:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	aivdrAsbdKEU msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL Lny8GcCeVGc9 Yfn77uLS5tv8	aivdrAsbdKEU msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	gBgcfFQ5WN9C msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe VyCX26p5UBRL Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8