Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000420066
Gene ID: ENSG00000115084
Gene Name: SLC35F5
Sequence (UNICHARACTER ENCODING) CUCUCCUAUGCCAUUAUAAUAAUUGGGAUCCUGUGAUGGUGGGAAUCAGAAGAAUAUUUGCUUUUAUAUGCAGAAAACAUCGAAUUCAGAGUUCCAGAAGACAGCGAACAGUGUGAGAGUCUCAUUUCUAUGCACAGUGUUUCUCAGGAGGAUGGAGCUAGUUAGCUGUCUGUUGUCUGUAGCCCAGCUUGAUAAUGGAACUAUACAGCGAAGAGACAAUCUCUGGCAAGUUUUUGUAGAAAAAAUGUUUCAGUGCCUAGUCUGAAAAAUAЖCAGUUUGAGUUCUUUGAAACUCUAAAAUAUAUUUUUCUCAUACCUGUUUUCUUCAUUUUCAUAAUGAAGCACUUUGCUAUGUAGCUGUGUACAUAUCACUACAGUUAUAGGAAGUUUCAGUCUACAGUCCAPCCAAAGGACCAACCUGCCUUACACAUCUCAAGGAAUUCAGCUGUUGAAAUCAUUUGAЖCUAAUCAAGGAAUAAAUCCUAAUGUUCUGGGЖCUPUAUUUUCACAUGUUAAAUGCUGGAAUAUAUUAUGAAAAUGUUUUCAAGAAAUCACUUAAGUGUUCAUAGACCAGUAUUUCUGACAGGUAAAAUGCUAAAAUAAGCUACCUGUAAUAAGUGUGGAUUAUAUUUUUGGGUUUUGUAGAAUAUUGCAAAUUAACCACACAAAAAAUGUUUAAUUUAUGCAACAAGCAUGUUUGUGCAAAUUUCAUGGGЖCUPUAAAAAGAAUAAGUAUUUGA
Sequence (SHORT NAMES ENCODING) CUCUCCUAUGCCAUUAUAAUAAUUGGGAUCCUGUGAUGGUGGGAAUCAGAAGAAUAUUUGCUUUUAUAUGCAGAAAACAUCGAAUUCAGAGUUCCAGAAGACAGCGAACAGUGUGAGAGUCUCAUUUCUAUGCACAGUGUUUCUCAGGAGGAUGGAGCUAGUUAGCUGUCUGUUGUCUGUAGCCCAGCUUGAUAAUGGAACUAUACAGCGAAGAGACAAUCUCUGGCAAGUUUUUGUAGAAAAAAUGUUUCAGUGCCUAGUCUGAAAAAUAm6ACAGUUUGAGUUCUUUGAAACUCUAAAAUAUAUUUUUCUCAUACCUGUUUUCUUCAUUUUCAUAAUGAAGCACUUUGCUAUGUAGCUGUGUACAUAUCACUACAGUUAUAGGAAGUUUCAGUCUACAGUCCAYCCAAAGGACCAACCUGCCUUACACAUCUCAAGGAAUUCAGCUGUUGAAAUCAUUUGAm6ACUAAUCAAGGAAUAAAUCCUAAUGUUCUGGGm6ACUYUAUUUUCACAUGUUAAAUGCUGGAAUAUAUUAUGAAAAUGUUUUCAAGAAAUCACUUAAGUGUUCAUAGACCAGUAUUUCUGACAGGUAAAAUGCUAAAAUAAGCUACCUGUAAUAAGUGUGGAUUAUAUUUUUGGGUUUUGUAGAAUAUUGCAAAUUAACCACACAAAAAAUGUUUAAUUUAUGCAACAAGCAUGUUUGUGCAAAUUUCAUGGGm6ACUYUAAAAAGAAUAAGUAUUUGA
Sequence (MODOMICS CODE ENCODING) CUCUCCUAUGCCAUUAUAAUAAUUGGGAUCCUGUGAUGGUGGGAAUCAGAAGAAUAUUUGCUUUUAUAUGCAGAAAACAUCGAAUUCAGAGUUCCAGAAGACAGCGAACAGUGUGAGAGUCUCAUUUCUAUGCACAGUGUUUCUCAGGAGGAUGGAGCUAGUUAGCUGUCUGUUGUCUGUAGCCCAGCUUGAUAAUGGAACUAUACAGCGAAGAGACAAUCUCUGGCAAGUUUUUGUAGAAAAAAUGUUUCAGUGCCUAGUCUGAAAAAUA2000000006ACAGUUUGAGUUCUUUGAAACUCUAAAAUAUAUUUUUCUCAUACCUGUUUUCUUCAUUUUCAUAAUGAAGCACUUUGCUAUGUAGCUGUGUACAUAUCACUACAGUUAUAGGAAGUUUCAGUCUACAGUCCA2000000009UCCAAAGGACCAACCUGCCUUACACAUCUCAAGGAAUUCAGCUGUUGAAAUCAUUUGA2000000006ACUAAUCAAGGAAUAAAUCCUAAUGUUCUGGG2000000006ACU2000000009UUAUUUUCACAUGUUAAAUGCUGGAAUAUAUUAUGAAAAUGUUUUCAAGAAAUCACUUAAGUGUUCAUAGACCAGUAUUUCUGACAGGUAAAAUGCUAAAAUAAGCUACCUGUAAUAAGUGUGGAUUAUAUUUUUGGGUUUUGUAGAAUAUUGCAAAUUAACCACACAAAAAAUGUUUAAUUUAUGCAACAAGCAUGUUUGUGCAAAUUUCAUGGG2000000006ACU2000000009UUAAAAAGAAUAAGUAUUUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 272 404 462 494 497 713 716
Modification Positions m6A Y m6A m6A Y m6A Y
Genomic Coordinates 2:113715111:- 2:113714979:- 2:113714921:- 2:113714889:- 2:113714886:- 2:113714670:- 2:113714667:-
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BsCW7emuRX7M
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
KTLz8piFYdwC
nfCHyrYzE6fB
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
KTLz8piFYdwC
nfCHyrYzE6fB
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP