General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000249504
Gene ID:	ENSG00000128713
Gene Name:	HOXD11
Sequence (UNICHARACTER ENCODING)	CUCUUGUGCAAUCGAUGGCUCAGGUUGGCUGCGCGGGGAGCGGCCAGAGGCUCGCUGGCGCGCACGCCGCGGAGUCAUGAACGACUUUGACGAGUGCGGCCAGAGCGCAGCCAGCAUGUACCUGCCGGGCUGCGCCUACUAUGUGGCCCCGUCUGACUUCGCUAGCAAGCCUUCGUUCCUUUCCCAACCGUCGUCCUGCCAGAUGЖCUUUCCCCUACUCUUCCAACCUGGCUCCGCACGUCCAGCCCGUGCGCGAAGUGGCCUUCCGCGACUACGGCCUGGAGCGCGCCAAGUGGCCGUACCGCGGCGGCGGCGGCGGCGGCAGCGCGGGGGGCGGCAGCAGCGGGGGCGGCCCCGGCGGGGGCGGCGGCGGCGCGGGGGGCUACGCUCCCUACUACGCGGCGGCGGCGGCGGCGGCUGCGGCGGCCGCGGCGGCCGAGGAGGCGGCCAUGCAACGCGAGCUUCUCCCGCCCGCGGGCCGCCGGCCGGЖCGUGCUCUUCAAGGCGCCUGAGCCGGUGUGCGCUGCGCCGGGGCCGCCGCACGGCCCCGCGGGCGCCGCCUCCAACUUCUACAGCGCGGUGGGCCGCAAUGGCAUCUUGCCACAGGGCUUCGACCAGUUCUACGAGGCAGCGCCCGGGCCCCCGUUCGCCGGGCCGCAGCCCCCGCCGCCACCCGCGCCGCCACAGCCCGAGGGCGCAGCCGACAAGGGCGACCCCAGGACCGGGGCUGGUGGCGGCGGGGGCAGUCCCUGCACCAAGGCGACCCCUGGCUCGGAGCCCAAGGGGGCAGCAGAAGGCAGCGGUGGCGACGGCGAGGGCCCCCCGGGAGAGGCGGGGGCCGAGAAGAGCAGCAGCGCAGUUGCCCCCCAGCGGUCCCGGAAAAAGCGCUGUCCCUAUACCAAGUACCAGAUCCGCGAЖCUGGAACGCGAGUUUUUCUPUAACGUGUACAUAAЖCAAAGAGAAAAGЖCUUCAACUCUCUCGGAUGCUCAACCUCACUGACCGGCAAGUCAAAAUCUGGUUCCAGAAUCGCAGGAUGAAAGAAAAGAAЖCUGAACAGAGЖCCGUCUGCAGUAUUUCACUGGAAACCCCUUAUUUUGAGAGCUCCAGGAAGCGCCCUCACCCCAGCCCCACUCACCCACCCUCCUUCCCACCAGCCUGCUCUCCGCAGGCCCACUGUCCUUGGGUUUAAUGACGUCUCUUCUCUGUGGAЖCUUCACGAUUCCUUCCCACGGUCAACUCGGGACCUCCCAGCGACCACUGCAGCCUGCGGACGAGGCCGGGЖCUUGGCCGAGCGGAUCCUAAUAAGGGGAAAAUGGUAAAUGCAAACGUCCCGUUACAAUUUUACCGCCAGUGUGCUGUCGUUCCCCCUCCCCCUCUCCGAGUCCUCGUGGGGACACGGCGGGGUCUGUAGGAAGUUGGGCCGGGUUGGGGGUUGCUAGAAGGCGCUGGUGUUUUGCUCUGAGUUUUAAGAGAUCCCUUCCUUCCUCUUCGGUGAAUGCAGGUUAUUUAAЖCUUUGGGAAAUGUACUUUUAGUCUGUCAUAUCAAGGCAUGAGUCACUGUCUUUUUUUGUGUGAAUAAAUGGUUUCUAGUAAAAUGGAGGUUACAGCUUCAAUACACUGUAUGAAUUCUCCUCUUUGAGGUUUAGUGCCUCCUUAGGAUAUUUUAGUGGCCAGAACCCAUGCAACUGAAAAUCGAAUGAAAUACUUUUUAG
Sequence (SHORT NAMES ENCODING)	CUCUUGUGCAAUCGAUGGCUCAGGUUGGCUGCGCGGGGAGCGGCCAGAGGCUCGCUGGCGCGCACGCCGCGGAGUCAUGAACGACUUUGACGAGUGCGGCCAGAGCGCAGCCAGCAUGUACCUGCCGGGCUGCGCCUACUAUGUGGCCCCGUCUGACUUCGCUAGCAAGCCUUCGUUCCUUUCCCAACCGUCGUCCUGCCAGAUGm6ACUUUCCCCUACUCUUCCAACCUGGCUCCGCACGUCCAGCCCGUGCGCGAAGUGGCCUUCCGCGACUACGGCCUGGAGCGCGCCAAGUGGCCGUACCGCGGCGGCGGCGGCGGCGGCAGCGCGGGGGGCGGCAGCAGCGGGGGCGGCCCCGGCGGGGGCGGCGGCGGCGCGGGGGGCUACGCUCCCUACUACGCGGCGGCGGCGGCGGCGGCUGCGGCGGCCGCGGCGGCCGAGGAGGCGGCCAUGCAACGCGAGCUUCUCCCGCCCGCGGGCCGCCGGCCGGm6ACGUGCUCUUCAAGGCGCCUGAGCCGGUGUGCGCUGCGCCGGGGCCGCCGCACGGCCCCGCGGGCGCCGCCUCCAACUUCUACAGCGCGGUGGGCCGCAAUGGCAUCUUGCCACAGGGCUUCGACCAGUUCUACGAGGCAGCGCCCGGGCCCCCGUUCGCCGGGCCGCAGCCCCCGCCGCCACCCGCGCCGCCACAGCCCGAGGGCGCAGCCGACAAGGGCGACCCCAGGACCGGGGCUGGUGGCGGCGGGGGCAGUCCCUGCACCAAGGCGACCCCUGGCUCGGAGCCCAAGGGGGCAGCAGAAGGCAGCGGUGGCGACGGCGAGGGCCCCCCGGGAGAGGCGGGGGCCGAGAAGAGCAGCAGCGCAGUUGCCCCCCAGCGGUCCCGGAAAAAGCGCUGUCCCUAUACCAAGUACCAGAUCCGCGAm6ACUGGAACGCGAGUUUUUCUYUAACGUGUACAUAAm6ACAAAGAGAAAAGm6ACUUCAACUCUCUCGGAUGCUCAACCUCACUGACCGGCAAGUCAAAAUCUGGUUCCAGAAUCGCAGGAUGAAAGAAAAGAAm6ACUGAACAGAGm6ACCGUCUGCAGUAUUUCACUGGAAACCCCUUAUUUUGAGAGCUCCAGGAAGCGCCCUCACCCCAGCCCCACUCACCCACCCUCCUUCCCACCAGCCUGCUCUCCGCAGGCCCACUGUCCUUGGGUUUAAUGACGUCUCUUCUCUGUGGAm6ACUUCACGAUUCCUUCCCACGGUCAACUCGGGACCUCCCAGCGACCACUGCAGCCUGCGGACGAGGCCGGGm6ACUUGGCCGAGCGGAUCCUAAUAAGGGGAAAAUGGUAAAUGCAAACGUCCCGUUACAAUUUUACCGCCAGUGUGCUGUCGUUCCCCCUCCCCCUCUCCGAGUCCUCGUGGGGACACGGCGGGGUCUGUAGGAAGUUGGGCCGGGUUGGGGGUUGCUAGAAGGCGCUGGUGUUUUGCUCUGAGUUUUAAGAGAUCCCUUCCUUCCUCUUCGGUGAAUGCAGGUUAUUUAAm6ACUUUGGGAAAUGUACUUUUAGUCUGUCAUAUCAAGGCAUGAGUCACUGUCUUUUUUUGUGUGAAUAAAUGGUUUCUAGUAAAAUGGAGGUUACAGCUUCAAUACACUGUAUGAAUUCUCCUCUUUGAGGUUUAGUGCCUCCUUAGGAUAUUUUAGUGGCCAGAACCCAUGCAACUGAAAAUCGAAUGAAAUACUUUUUAG
Sequence (MODOMICS CODE ENCODING)	CUCUUGUGCAAUCGAUGGCUCAGGUUGGCUGCGCGGGGAGCGGCCAGAGGCUCGCUGGCGCGCACGCCGCGGAGUCAUGAACGACUUUGACGAGUGCGGCCAGAGCGCAGCCAGCAUGUACCUGCCGGGCUGCGCCUACUAUGUGGCCCCGUCUGACUUCGCUAGCAAGCCUUCGUUCCUUUCCCAACCGUCGUCCUGCCAGAUG2000000006ACUUUCCCCUACUCUUCCAACCUGGCUCCGCACGUCCAGCCCGUGCGCGAAGUGGCCUUCCGCGACUACGGCCUGGAGCGCGCCAAGUGGCCGUACCGCGGCGGCGGCGGCGGCGGCAGCGCGGGGGGCGGCAGCAGCGGGGGCGGCCCCGGCGGGGGCGGCGGCGGCGCGGGGGGCUACGCUCCCUACUACGCGGCGGCGGCGGCGGCGGCUGCGGCGGCCGCGGCGGCCGAGGAGGCGGCCAUGCAACGCGAGCUUCUCCCGCCCGCGGGCCGCCGGCCGG2000000006ACGUGCUCUUCAAGGCGCCUGAGCCGGUGUGCGCUGCGCCGGGGCCGCCGCACGGCCCCGCGGGCGCCGCCUCCAACUUCUACAGCGCGGUGGGCCGCAAUGGCAUCUUGCCACAGGGCUUCGACCAGUUCUACGAGGCAGCGCCCGGGCCCCCGUUCGCCGGGCCGCAGCCCCCGCCGCCACCCGCGCCGCCACAGCCCGAGGGCGCAGCCGACAAGGGCGACCCCAGGACCGGGGCUGGUGGCGGCGGGGGCAGUCCCUGCACCAAGGCGACCCCUGGCUCGGAGCCCAAGGGGGCAGCAGAAGGCAGCGGUGGCGACGGCGAGGGCCCCCCGGGAGAGGCGGGGGCCGAGAAGAGCAGCAGCGCAGUUGCCCCCCAGCGGUCCCGGAAAAAGCGCUGUCCCUAUACCAAGUACCAGAUCCGCGA2000000006ACUGGAACGCGAGUUUUUCU2000000009UUAACGUGUACAUAA2000000006ACAAAGAGAAAAG2000000006ACUUCAACUCUCUCGGAUGCUCAACCUCACUGACCGGCAAGUCAAAAUCUGGUUCCAGAAUCGCAGGAUGAAAGAAAAGAA2000000006ACUGAACAGAG2000000006ACCGUCUGCAGUAUUUCACUGGAAACCCCUUAUUUUGAGAGCUCCAGGAAGCGCCCUCACCCCAGCCCCACUCACCCACCCUCCUUCCCACCAGCCUGCUCUCCGCAGGCCCACUGUCCUUGGGUUUAAUGACGUCUCUUCUCUGUGGA2000000006ACUUCACGAUUCCUUCCCACGGUCAACUCGGGACCUCCCAGCGACCACUGCAGCCUGCGGACGAGGCCGGG2000000006ACUUGGCCGAGCGGAUCCUAAUAAGGGGAAAAUGGUAAAUGCAAACGUCCCGUUACAAUUUUACCGCCAGUGUGCUGUCGUUCCCCCUCCCCCUCUCCGAGUCCUCGUGGGGACACGGCGGGGUCUGUAGGAAGUUGGGCCGGGUUGGGGGUUGCUAGAAGGCGCUGGUGUUUUGCUCUGAGUUUUAAGAGAUCCCUUCCUUCCUCUUCGGUGAAUGCAGGUUAUUUAA2000000006ACUUUGGGAAAUGUACUUUUAGUCUGUCAUAUCAAGGCAUGAGUCACUGUCUUUUUUUGUGUGAAUAAAUGGUUUCUAGUAAAAUGGAGGUUACAGCUUCAAUACACUGUAUGAAUUCUCCUCUUUGAGGUUUAGUGCCUCCUUAGGAUAUUUUAGUGGCCAGAACCCAUGCAACUGAAAAUCGAAUGAAAUACUUUUUAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	206	489	916	936	951	964	1045	1056	1205	1276	1505
Modification Positions	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	2:176107485:+	2:176107768:+	2:176108965:+	2:176108985:+	2:176109000:+	2:176109013:+	2:176109094:+	2:176109105:+	2:176109254:+	2:176109325:+	2:176109554:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8