General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000643103
Gene ID:	ENSG00000115355
Gene Name:	CCDC88A
Sequence (UNICHARACTER ENCODING)	CUGAUAAAAGAUUGACAUGGUUUACUAAGCAUUUCUAAAUAAAGCUUGAAAGUAAAUUUGGCUGUUCAUAUAAUUAGCACACAGUCAACAAAUGUUAUUACUCAUGAAGUAUUAAUCUCAAUUCUAUUAUUGAAAUCUCAACACCCCAUUUACUCCAAAAGCAGGUGCAGUUAAUAACCAAAGCAGGCCACAAAGCCACAGCAGUGGAGAAUUUAGCCUGCUUCAUGACCAUGAGGCUUGGUCCAGCAGUGGUAGCAGUCCAAUCCAGUACUUGAAAAGACAGACCAGAUCAAGCCCAGUGCUCCAGCACAAAAUAUCUGAAACACUGGAGAGUCGACAUCACAAGAUCAAAACUGGUUCCCCUGGAAGUGAAGUUGUUACUCUACAACAGUUUUUGGAAGAAAGCAAUAAGCUUACCUCAGUACAGAUAAAGUCCUCAAGUCAAGAGAAUCUUUUAGAUGAAGUAAUGAAAAGUUUGUCUGUCUCUUCUGЖCUUUUUGGGAAAAGACAAACCAGUUAGCUGUGGUCUGGCCAGGUCAGUAAGUGGAAAAACCCCAGGGGЖCUUCUAUGAUAGACGGЖCAACUAAGCCUGAGUUUUUGAGACCUGGUCCUCGAAAAЖCUGAAGAUACCUACUUCAUUAGUUCUGCGGGAAAACCUACACCAGGCACUCAAGGAAAAAUAAAAUUAGUAAAAGAAUCUUCUCUGUCACGACAAUCAAAAGAUAGUAACCCUUAUGCAACUUUACCUCGUGCAAGCAGCGUGAUCUCAACUGCCGAAGGAACUACACGAAGGACAAGCAUCCAUGAUUUUUUGACCAAGGЖCAGUAGЖCUGCCUAUAUCAGUUGAUUCACCACCAGCUGCUGCUGACAGCAACACCACUGCAGCAUCUAAUGUGGACAAAGUACAAGAAAGCAGAAAUUCAAAAAGCAGGUCUAGGGAGCAACAAAGCUCCUAAUUCUAUUACCCACUACAUGACAUGUGGGCCAAGUGGUGAGUUUCCUGCUUAAAAUGUAAAUGAGAUUAGUCUCAUUUAUACAAACUAACCAAAUUAAGUGUGAAACAAGUGCACAUUGCAUUAACAGAUGUAAAUAUUGCUUGCUUAAUUCAUUGACUUUCUGUUCUACUUACUAGUGAAGCAAGAUUAGUUGGCUGCCAUAGGUUUUUACCUGUCAGCGCAAGGAACAAGUAUUUUUUUUUAAGUUUUUUUGUCACUUUAAAUUUAAUUUUACUAGUGAAUUAUGUUCUAGGAAUUACUUUUUUAGUUUGAAGCCUUUUGUGGUAGGAAUACAACUUCCCCACAGUUUUCUUGAAAAUUAAUGACUAAAUGCCUAUUCUAUGAUGAGCCACUCAAAAAUUAUCUCUGAUUGUCUGUCAUUCUCAUUCUUAUAGAAAUACCUGGUGCAUGCUGUUCUUAUAGUGGCUGCUCUGUAUUUUGUGUCUCUCUUAUCUUUAAGCUUUUCUUAUAUUUUCUUUCUUCUUUCUACCUUCCAACUAAAUACAGAGAGAAAAGUGUCCUUCAGUUUCUCAGUAUGAAGCCUUUAUUUCUGAAGUAACAAGACACCUAGCAACUAUAGGAAUCAUUUUUAAAAAUCUUUAAGGAGЖCUUUUAACAGUCCUUCGUGAAUAGAGCAGGCAAGAAAUACAAACCUUCAUUCCUUGAAUCAAGGAGCACUACUGGAUUCAACUGCCAAAAUUUUUUAAAGGUUUUAGGЖCUUACUAUACCUUGUACUGUUAAGAUCUACUGAAUAAAGGЖCGUUCUCUCACUAAGGACCAGGUGUUUUAAGGUUAAGUGUUUAAAGAAGUACUCCAAGAACAAUCUGCUUUUUUCAUCAUUUGUUUUAUGAAUUUAUCCAUGUUUGCUUAAUGCUUCUGCUAAGUGUUAGCCAAAAUCUAGCCAUUUAUAUUUAGUUGUGUAAACCUAAAUUAAAUGCUGUAGUAUUUUGUGGAAUGUACUAUAUAGCAAGAUACAGAGAAAAUUGUUUUGGCAUGUCAGAGCCUUAUUUGGUUAGCAG
Sequence (SHORT NAMES ENCODING)	CUGAUAAAAGAUUGACAUGGUUUACUAAGCAUUUCUAAAUAAAGCUUGAAAGUAAAUUUGGCUGUUCAUAUAAUUAGCACACAGUCAACAAAUGUUAUUACUCAUGAAGUAUUAAUCUCAAUUCUAUUAUUGAAAUCUCAACACCCCAUUUACUCCAAAAGCAGGUGCAGUUAAUAACCAAAGCAGGCCACAAAGCCACAGCAGUGGAGAAUUUAGCCUGCUUCAUGACCAUGAGGCUUGGUCCAGCAGUGGUAGCAGUCCAAUCCAGUACUUGAAAAGACAGACCAGAUCAAGCCCAGUGCUCCAGCACAAAAUAUCUGAAACACUGGAGAGUCGACAUCACAAGAUCAAAACUGGUUCCCCUGGAAGUGAAGUUGUUACUCUACAACAGUUUUUGGAAGAAAGCAAUAAGCUUACCUCAGUACAGAUAAAGUCCUCAAGUCAAGAGAAUCUUUUAGAUGAAGUAAUGAAAAGUUUGUCUGUCUCUUCUGm6ACUUUUUGGGAAAAGACAAACCAGUUAGCUGUGGUCUGGCCAGGUCAGUAAGUGGAAAAACCCCAGGGGm6ACUUCUAUGAUAGACGGm6ACAACUAAGCCUGAGUUUUUGAGACCUGGUCCUCGAAAAm6ACUGAAGAUACCUACUUCAUUAGUUCUGCGGGAAAACCUACACCAGGCACUCAAGGAAAAAUAAAAUUAGUAAAAGAAUCUUCUCUGUCACGACAAUCAAAAGAUAGUAACCCUUAUGCAACUUUACCUCGUGCAAGCAGCGUGAUCUCAACUGCCGAAGGAACUACACGAAGGACAAGCAUCCAUGAUUUUUUGACCAAGGm6ACAGUAGm6ACUGCCUAUAUCAGUUGAUUCACCACCAGCUGCUGCUGACAGCAACACCACUGCAGCAUCUAAUGUGGACAAAGUACAAGAAAGCAGAAAUUCAAAAAGCAGGUCUAGGGAGCAACAAAGCUCCUAAUUCUAUUACCCACUACAUGACAUGUGGGCCAAGUGGUGAGUUUCCUGCUUAAAAUGUAAAUGAGAUUAGUCUCAUUUAUACAAACUAACCAAAUUAAGUGUGAAACAAGUGCACAUUGCAUUAACAGAUGUAAAUAUUGCUUGCUUAAUUCAUUGACUUUCUGUUCUACUUACUAGUGAAGCAAGAUUAGUUGGCUGCCAUAGGUUUUUACCUGUCAGCGCAAGGAACAAGUAUUUUUUUUUAAGUUUUUUUGUCACUUUAAAUUUAAUUUUACUAGUGAAUUAUGUUCUAGGAAUUACUUUUUUAGUUUGAAGCCUUUUGUGGUAGGAAUACAACUUCCCCACAGUUUUCUUGAAAAUUAAUGACUAAAUGCCUAUUCUAUGAUGAGCCACUCAAAAAUUAUCUCUGAUUGUCUGUCAUUCUCAUUCUUAUAGAAAUACCUGGUGCAUGCUGUUCUUAUAGUGGCUGCUCUGUAUUUUGUGUCUCUCUUAUCUUUAAGCUUUUCUUAUAUUUUCUUUCUUCUUUCUACCUUCCAACUAAAUACAGAGAGAAAAGUGUCCUUCAGUUUCUCAGUAUGAAGCCUUUAUUUCUGAAGUAACAAGACACCUAGCAACUAUAGGAAUCAUUUUUAAAAAUCUUUAAGGAGm6ACUUUUAACAGUCCUUCGUGAAUAGAGCAGGCAAGAAAUACAAACCUUCAUUCCUUGAAUCAAGGAGCACUACUGGAUUCAACUGCCAAAAUUUUUUAAAGGUUUUAGGm6ACUUACUAUACCUUGUACUGUUAAGAUCUACUGAAUAAAGGm6ACGUUCUCUCACUAAGGACCAGGUGUUUUAAGGUUAAGUGUUUAAAGAAGUACUCCAAGAACAAUCUGCUUUUUUCAUCAUUUGUUUUAUGAAUUUAUCCAUGUUUGCUUAAUGCUUCUGCUAAGUGUUAGCCAAAAUCUAGCCAUUUAUAUUUAGUUGUGUAAACCUAAAUUAAAUGCUGUAGUAUUUUGUGGAAUGUACUAUAUAGCAAGAUACAGAGAAAAUUGUUUUGGCAUGUCAGAGCCUUAUUUGGUUAGCAG
Sequence (MODOMICS CODE ENCODING)	CUGAUAAAAGAUUGACAUGGUUUACUAAGCAUUUCUAAAUAAAGCUUGAAAGUAAAUUUGGCUGUUCAUAUAAUUAGCACACAGUCAACAAAUGUUAUUACUCAUGAAGUAUUAAUCUCAAUUCUAUUAUUGAAAUCUCAACACCCCAUUUACUCCAAAAGCAGGUGCAGUUAAUAACCAAAGCAGGCCACAAAGCCACAGCAGUGGAGAAUUUAGCCUGCUUCAUGACCAUGAGGCUUGGUCCAGCAGUGGUAGCAGUCCAAUCCAGUACUUGAAAAGACAGACCAGAUCAAGCCCAGUGCUCCAGCACAAAAUAUCUGAAACACUGGAGAGUCGACAUCACAAGAUCAAAACUGGUUCCCCUGGAAGUGAAGUUGUUACUCUACAACAGUUUUUGGAAGAAAGCAAUAAGCUUACCUCAGUACAGAUAAAGUCCUCAAGUCAAGAGAAUCUUUUAGAUGAAGUAAUGAAAAGUUUGUCUGUCUCUUCUG2000000006ACUUUUUGGGAAAAGACAAACCAGUUAGCUGUGGUCUGGCCAGGUCAGUAAGUGGAAAAACCCCAGGGG2000000006ACUUCUAUGAUAGACGG2000000006ACAACUAAGCCUGAGUUUUUGAGACCUGGUCCUCGAAAA2000000006ACUGAAGAUACCUACUUCAUUAGUUCUGCGGGAAAACCUACACCAGGCACUCAAGGAAAAAUAAAAUUAGUAAAAGAAUCUUCUCUGUCACGACAAUCAAAAGAUAGUAACCCUUAUGCAACUUUACCUCGUGCAAGCAGCGUGAUCUCAACUGCCGAAGGAACUACACGAAGGACAAGCAUCCAUGAUUUUUUGACCAAGG2000000006ACAGUAG2000000006ACUGCCUAUAUCAGUUGAUUCACCACCAGCUGCUGCUGACAGCAACACCACUGCAGCAUCUAAUGUGGACAAAGUACAAGAAAGCAGAAAUUCAAAAAGCAGGUCUAGGGAGCAACAAAGCUCCUAAUUCUAUUACCCACUACAUGACAUGUGGGCCAAGUGGUGAGUUUCCUGCUUAAAAUGUAAAUGAGAUUAGUCUCAUUUAUACAAACUAACCAAAUUAAGUGUGAAACAAGUGCACAUUGCAUUAACAGAUGUAAAUAUUGCUUGCUUAAUUCAUUGACUUUCUGUUCUACUUACUAGUGAAGCAAGAUUAGUUGGCUGCCAUAGGUUUUUACCUGUCAGCGCAAGGAACAAGUAUUUUUUUUUAAGUUUUUUUGUCACUUUAAAUUUAAUUUUACUAGUGAAUUAUGUUCUAGGAAUUACUUUUUUAGUUUGAAGCCUUUUGUGGUAGGAAUACAACUUCCCCACAGUUUUCUUGAAAAUUAAUGACUAAAUGCCUAUUCUAUGAUGAGCCACUCAAAAAUUAUCUCUGAUUGUCUGUCAUUCUCAUUCUUAUAGAAAUACCUGGUGCAUGCUGUUCUUAUAGUGGCUGCUCUGUAUUUUGUGUCUCUCUUAUCUUUAAGCUUUUCUUAUAUUUUCUUUCUUCUUUCUACCUUCCAACUAAAUACAGAGAGAAAAGUGUCCUUCAGUUUCUCAGUAUGAAGCCUUUAUUUCUGAAGUAACAAGACACCUAGCAACUAUAGGAAUCAUUUUUAAAAAUCUUUAAGGAG2000000006ACUUUUAACAGUCCUUCGUGAAUAGAGCAGGCAAGAAAUACAAACCUUCAUUCCUUGAAUCAAGGAGCACUACUGGAUUCAACUGCCAAAAUUUUUUAAAGGUUUUAGG2000000006ACUUACUAUACCUUGUACUGUUAAGAUCUACUGAAUAAAGG2000000006ACGUUCUCUCACUAAGGACCAGGUGUUUUAAGGUUAAGUGUUUAAAGAAGUACUCCAAGAACAAUCUGCUUUUUUCAUCAUUUGUUUUAUGAAUUUAUCCAUGUUUGCUUAAUGCUUCUGCUAAGUGUUAGCCAAAAUCUAGCCAUUUAUAUUUAGUUGUGUAAACCUAAAUUAAAUGCUGUAGUAUUUUGUGGAAUGUACUAUAUAGCAAGAUACAGAGAAAAUUGUUUUGGCAUGUCAGAGCCUUAUUUGGUUAGCAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	492	561	578	617	819	826	1599	1708	1749
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	2:55295992:-	2:55295923:-	2:55295906:-	2:55295867:-	2:55295665:-	2:55295658:-	2:55291064:-	2:55290955:-	2:55290914:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL 93arJtwJmuS9 ArijeGVTwYBw nfCHyrYzE6fB WiQcrNTGZHPT Lny8GcCeVGc9 UKen6WEino9G	5FhTyQVy2tKW 6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw nfCHyrYzE6fB KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	3TeAZFYFxgvp 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL KTLz8piFYdwC Lny8GcCeVGc9	KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G	8cMbzB4aD5Se WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G