Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000351439
Gene ID: ENSG00000115252
Gene Name: PDE1A
Sequence (UNICHARACTER ENCODING) CUUUCGGAGCUUGACCAGCAUGUGGAAGGAGAGCUCUCAUGGCUGCAAUAACUUAGGGAGUUCCUACCUGGAUGACACUGGGGUAGGAAGUUUUCUGUUUGUUUUGUUCUGUUUCGGAGGGUCCCGUGCACUUCUCUUGCCUGGAUCAACGUGЖCUCUUGGUGGUUUUUGCACACCCUGCUCUGUGGGGGAGUGCCCCAACGUGCCUGUCUUAUGUGGCCUCUAUGGЖCACACUGCUCAGCUGGCAGAGAACAGGGAAGUUUUCUCCCAGCACCCAAAAAGAGAAAGAGGAAACUACUUUUUCUUUCUGGGCUCCUUGCAGCACAAUAGAUCAGGAUAAGCUUCCACAUUUCCUCUCUGGAGUUUCUGGAGUGGUUUCCAGGAAGAAGUUAAACCUUCACCUUUAAAUGGAUGACCAUGUCACAAUCAGGAAGAAACAUCUCCAAAGACCCAUCUUUAGACUAAGAUGCUUGGUGAAGCAGCUGGAAAGAGGUGAUGUUAACGUCGUCGACUUAAAGAAGAAUAUUGAAUAUGCGGCAUCUGUGCUGGAAGCAGUUUAUAUCGAUGAAACAAGAAGACUUCUGGAUACUGAAGAUGAGCUCAGUGACAUUCAGACUGACUCAGUCCCAUCUGAAGUCCGGGACUGGUUGGCUUCUACCUUUACACGGAAAAUGGGGAUGACAAAAAAGAAACCUGAGGAAAAACCAAAAUUUCGGAGCAUUGUGCAUGCUGUUCAAGCUGGAAUUUUUGUGGAAAGAAUGUACCGAAAAACAUAUCAUAUGGUUGGUUUGGCAUAUCCAGCAGCUGUCAUCGUAACAUUAAAGGAUGUUGAUAAAUGGUCUUUCGAUGUAUUUGCCCUAAAUGAAGCAAGUGGAGAGCAUAGUCUGAAGUUUAUGAUUUAUGAACUGUUUACCAGAUAUGAUCUUAUCAACCGUUUCAAGAUUCCUGUUUCUUGCCUAAUCACCUUUGCAGAAGCUUUAGAAGUUGGUUACAGCAAGUACAAAAAUCCAUAUCACAAUUUGAUUCAUGCAGCUGAUGUCACUCAAACUGUGCAUUACAUAAUGCUUCAUACAGGUAUCAUGCACUGGCUCACUGAACUGGAAAUUUUAGCAAUGGUCUUUGCUGCUGCCAUUCAUGAUUAUGAGCAUACAGGGACAACAAACAACUUUCACAUUCAGACAAGGUCAGAUGUUGCCAUUUUGUAUAAUGAUCGCUCUGUCCUUGAGAAUCACCACGUGAGUGCAGCUUAUCGACUUAUGCAAGAAGAAGAAAUGAAUAUCUUGAUAAAUUUAUCCAAAGAUGACUGGAGGGAUCUUCGGAACCUAGUGAUUGAAAUGGUUUUAUCUACAGACAUGUCAGGUCACUUCCAGCAAAUUAAAAAUAUAAGAAACAGUUUGCAGCAGCCUGAAGGGAUUGACAGAGCCAAAACCAUGUCCCUGAUUCUCCACGCAGCAGACAUCAGCCACCCAGCCAAAUCCUGGAAGCUGCAUUAUCGGUGGACCAUGGCCCUAAUGGAGGAGUUUUUCCUGCAGGGAGAUAAAGAAGCUGAAUUAGGGCUUCCAUUUUCCCCACUUUGUGAUCGGAAGUCAACCAUGGUGGCCCAGUCACAAAUAGGUUUCAUCGAUUUCAUAGUAGAGCCAACAUUUUCUCUUCUGACAGACUCAACAGAGAAAAUUGUUAUUCCUCUUAUAGAGGAAGCCUCAAAAGCCGAAACUUCUUCCUAUGUGGCAAGCAGCUCAACCACCAUUGUGGGGUUACACAUUGCUGAUGCACUAAGACGAUCAAAUACAAAAGGCUCCAUGAGUGAUGGGUCCUAUUCCCCAGACUACUCCCUUGCAGCAGUGGACCUGAAGAGUUUCAAGAACAACCUGGUGGACAUCAUUCAGCAGAACAAAGAGAGGUGGAAAGAGUUAGCUGCACAAGAAGCAAGAACCAGUUCACAGAAGUGUGAGUUUAUUCAUCAGUAAACACCUUUAAGUAAAACCUCGUGCAUGGUGGCAGCUCUAAUUUGACCAAAAGЖCUUGGAGAUUUUGAUUAUGCUUGCUGGAAAUCUACCCUGUCCUGUGUGAGACAGGAAAUCUAUUUUUGCAGAUUGCUCAAUAAGCAUCAUGAGCCACAUAAAUAACAGCUGUAAACUCCUUAAUUCACCGGGCUCAACUGCUACCGAACAGAUUCAUCUAGUGGCUACAUCAGCACCUUGUGCUUUCAGAUAUCUGUUUCAAUGGCAUUUUGUGGCAUUUGUCUUUACCGAGUGCCAAUAAAUUUUCUUUGAGCAGCUAAUUGCUAAUUUUGUCAUUUCUACAAUAAAGCUUGGUCCACCUGUUUUC
Sequence (SHORT NAMES ENCODING) CUUUCGGAGCUUGACCAGCAUGUGGAAGGAGAGCUCUCAUGGCUGCAAUAACUUAGGGAGUUCCUACCUGGAUGACACUGGGGUAGGAAGUUUUCUGUUUGUUUUGUUCUGUUUCGGAGGGUCCCGUGCACUUCUCUUGCCUGGAUCAACGUGm6ACUCUUGGUGGUUUUUGCACACCCUGCUCUGUGGGGGAGUGCCCCAACGUGCCUGUCUUAUGUGGCCUCUAUGGm6ACACACUGCUCAGCUGGCAGAGAACAGGGAAGUUUUCUCCCAGCACCCAAAAAGAGAAAGAGGAAACUACUUUUUCUUUCUGGGCUCCUUGCAGCACAAUAGAUCAGGAUAAGCUUCCACAUUUCCUCUCUGGAGUUUCUGGAGUGGUUUCCAGGAAGAAGUUAAACCUUCACCUUUAAAUGGAUGACCAUGUCACAAUCAGGAAGAAACAUCUCCAAAGACCCAUCUUUAGACUAAGAUGCUUGGUGAAGCAGCUGGAAAGAGGUGAUGUUAACGUCGUCGACUUAAAGAAGAAUAUUGAAUAUGCGGCAUCUGUGCUGGAAGCAGUUUAUAUCGAUGAAACAAGAAGACUUCUGGAUACUGAAGAUGAGCUCAGUGACAUUCAGACUGACUCAGUCCCAUCUGAAGUCCGGGACUGGUUGGCUUCUACCUUUACACGGAAAAUGGGGAUGACAAAAAAGAAACCUGAGGAAAAACCAAAAUUUCGGAGCAUUGUGCAUGCUGUUCAAGCUGGAAUUUUUGUGGAAAGAAUGUACCGAAAAACAUAUCAUAUGGUUGGUUUGGCAUAUCCAGCAGCUGUCAUCGUAACAUUAAAGGAUGUUGAUAAAUGGUCUUUCGAUGUAUUUGCCCUAAAUGAAGCAAGUGGAGAGCAUAGUCUGAAGUUUAUGAUUUAUGAACUGUUUACCAGAUAUGAUCUUAUCAACCGUUUCAAGAUUCCUGUUUCUUGCCUAAUCACCUUUGCAGAAGCUUUAGAAGUUGGUUACAGCAAGUACAAAAAUCCAUAUCACAAUUUGAUUCAUGCAGCUGAUGUCACUCAAACUGUGCAUUACAUAAUGCUUCAUACAGGUAUCAUGCACUGGCUCACUGAACUGGAAAUUUUAGCAAUGGUCUUUGCUGCUGCCAUUCAUGAUUAUGAGCAUACAGGGACAACAAACAACUUUCACAUUCAGACAAGGUCAGAUGUUGCCAUUUUGUAUAAUGAUCGCUCUGUCCUUGAGAAUCACCACGUGAGUGCAGCUUAUCGACUUAUGCAAGAAGAAGAAAUGAAUAUCUUGAUAAAUUUAUCCAAAGAUGACUGGAGGGAUCUUCGGAACCUAGUGAUUGAAAUGGUUUUAUCUACAGACAUGUCAGGUCACUUCCAGCAAAUUAAAAAUAUAAGAAACAGUUUGCAGCAGCCUGAAGGGAUUGACAGAGCCAAAACCAUGUCCCUGAUUCUCCACGCAGCAGACAUCAGCCACCCAGCCAAAUCCUGGAAGCUGCAUUAUCGGUGGACCAUGGCCCUAAUGGAGGAGUUUUUCCUGCAGGGAGAUAAAGAAGCUGAAUUAGGGCUUCCAUUUUCCCCACUUUGUGAUCGGAAGUCAACCAUGGUGGCCCAGUCACAAAUAGGUUUCAUCGAUUUCAUAGUAGAGCCAACAUUUUCUCUUCUGACAGACUCAACAGAGAAAAUUGUUAUUCCUCUUAUAGAGGAAGCCUCAAAAGCCGAAACUUCUUCCUAUGUGGCAAGCAGCUCAACCACCAUUGUGGGGUUACACAUUGCUGAUGCACUAAGACGAUCAAAUACAAAAGGCUCCAUGAGUGAUGGGUCCUAUUCCCCAGACUACUCCCUUGCAGCAGUGGACCUGAAGAGUUUCAAGAACAACCUGGUGGACAUCAUUCAGCAGAACAAAGAGAGGUGGAAAGAGUUAGCUGCACAAGAAGCAAGAACCAGUUCACAGAAGUGUGAGUUUAUUCAUCAGUAAACACCUUUAAGUAAAACCUCGUGCAUGGUGGCAGCUCUAAUUUGACCAAAAGm6ACUUGGAGAUUUUGAUUAUGCUUGCUGGAAAUCUACCCUGUCCUGUGUGAGACAGGAAAUCUAUUUUUGCAGAUUGCUCAAUAAGCAUCAUGAGCCACAUAAAUAACAGCUGUAAACUCCUUAAUUCACCGGGCUCAACUGCUACCGAACAGAUUCAUCUAGUGGCUACAUCAGCACCUUGUGCUUUCAGAUAUCUGUUUCAAUGGCAUUUUGUGGCAUUUGUCUUUACCGAGUGCCAAUAAAUUUUCUUUGAGCAGCUAAUUGCUAAUUUUGUCAUUUCUACAAUAAAGCUUGGUCCACCUGUUUUC
Sequence (MODOMICS CODE ENCODING) CUUUCGGAGCUUGACCAGCAUGUGGAAGGAGAGCUCUCAUGGCUGCAAUAACUUAGGGAGUUCCUACCUGGAUGACACUGGGGUAGGAAGUUUUCUGUUUGUUUUGUUCUGUUUCGGAGGGUCCCGUGCACUUCUCUUGCCUGGAUCAACGUG2000000006ACUCUUGGUGGUUUUUGCACACCCUGCUCUGUGGGGGAGUGCCCCAACGUGCCUGUCUUAUGUGGCCUCUAUGG2000000006ACACACUGCUCAGCUGGCAGAGAACAGGGAAGUUUUCUCCCAGCACCCAAAAAGAGAAAGAGGAAACUACUUUUUCUUUCUGGGCUCCUUGCAGCACAAUAGAUCAGGAUAAGCUUCCACAUUUCCUCUCUGGAGUUUCUGGAGUGGUUUCCAGGAAGAAGUUAAACCUUCACCUUUAAAUGGAUGACCAUGUCACAAUCAGGAAGAAACAUCUCCAAAGACCCAUCUUUAGACUAAGAUGCUUGGUGAAGCAGCUGGAAAGAGGUGAUGUUAACGUCGUCGACUUAAAGAAGAAUAUUGAAUAUGCGGCAUCUGUGCUGGAAGCAGUUUAUAUCGAUGAAACAAGAAGACUUCUGGAUACUGAAGAUGAGCUCAGUGACAUUCAGACUGACUCAGUCCCAUCUGAAGUCCGGGACUGGUUGGCUUCUACCUUUACACGGAAAAUGGGGAUGACAAAAAAGAAACCUGAGGAAAAACCAAAAUUUCGGAGCAUUGUGCAUGCUGUUCAAGCUGGAAUUUUUGUGGAAAGAAUGUACCGAAAAACAUAUCAUAUGGUUGGUUUGGCAUAUCCAGCAGCUGUCAUCGUAACAUUAAAGGAUGUUGAUAAAUGGUCUUUCGAUGUAUUUGCCCUAAAUGAAGCAAGUGGAGAGCAUAGUCUGAAGUUUAUGAUUUAUGAACUGUUUACCAGAUAUGAUCUUAUCAACCGUUUCAAGAUUCCUGUUUCUUGCCUAAUCACCUUUGCAGAAGCUUUAGAAGUUGGUUACAGCAAGUACAAAAAUCCAUAUCACAAUUUGAUUCAUGCAGCUGAUGUCACUCAAACUGUGCAUUACAUAAUGCUUCAUACAGGUAUCAUGCACUGGCUCACUGAACUGGAAAUUUUAGCAAUGGUCUUUGCUGCUGCCAUUCAUGAUUAUGAGCAUACAGGGACAACAAACAACUUUCACAUUCAGACAAGGUCAGAUGUUGCCAUUUUGUAUAAUGAUCGCUCUGUCCUUGAGAAUCACCACGUGAGUGCAGCUUAUCGACUUAUGCAAGAAGAAGAAAUGAAUAUCUUGAUAAAUUUAUCCAAAGAUGACUGGAGGGAUCUUCGGAACCUAGUGAUUGAAAUGGUUUUAUCUACAGACAUGUCAGGUCACUUCCAGCAAAUUAAAAAUAUAAGAAACAGUUUGCAGCAGCCUGAAGGGAUUGACAGAGCCAAAACCAUGUCCCUGAUUCUCCACGCAGCAGACAUCAGCCACCCAGCCAAAUCCUGGAAGCUGCAUUAUCGGUGGACCAUGGCCCUAAUGGAGGAGUUUUUCCUGCAGGGAGAUAAAGAAGCUGAAUUAGGGCUUCCAUUUUCCCCACUUUGUGAUCGGAAGUCAACCAUGGUGGCCCAGUCACAAAUAGGUUUCAUCGAUUUCAUAGUAGAGCCAACAUUUUCUCUUCUGACAGACUCAACAGAGAAAAUUGUUAUUCCUCUUAUAGAGGAAGCCUCAAAAGCCGAAACUUCUUCCUAUGUGGCAAGCAGCUCAACCACCAUUGUGGGGUUACACAUUGCUGAUGCACUAAGACGAUCAAAUACAAAAGGCUCCAUGAGUGAUGGGUCCUAUUCCCCAGACUACUCCCUUGCAGCAGUGGACCUGAAGAGUUUCAAGAACAACCUGGUGGACAUCAUUCAGCAGAACAAAGAGAGGUGGAAAGAGUUAGCUGCACAAGAAGCAAGAACCAGUUCACAGAAGUGUGAGUUUAUUCAUCAGUAAACACCUUUAAGUAAAACCUCGUGCAUGGUGGCAGCUCUAAUUUGACCAAAAG2000000006ACUUGGAGAUUUUGAUUAUGCUUGCUGGAAAUCUACCCUGUCCUGUGUGAGACAGGAAAUCUAUUUUUGCAGAUUGCUCAAUAAGCAUCAUGAGCCACAUAAAUAACAGCUGUAAACUCCUUAAUUCACCGGGCUCAACUGCUACCGAACAGAUUCAUCUAGUGGCUACAUCAGCACCUUGUGCUUUCAGAUAUCUGUUUCAAUGGCAUUUUGUGGCAUUUGUCUUUACCGAGUGCCAAUAAAUUUUCUUUGAGCAGCUAAUUGCUAAUUUUGUCAUUUCUACAAUAAAGCUUGGUCCACCUGUUUUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 154 228 2019
Modification Positions m6A m6A m6A
Genomic Coordinates 2:182426883:- 2:182426809:- 2:182168194:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
3TeAZFYFxgvp
5FhTyQVy2tKW
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
QmcpiJ88DBDn
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9