General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000378727
Gene ID:	ENSG00000138050
Gene Name:	THUMPD2
Sequence (UNICHARACTER ENCODING)	GAAGGCGCGAGGGCGCGCCUGAGCCGCCAUGUCGGAGGCGCGUGGAGAGCCAGGGUCCGGGCCUGAGGCUGGCGCCCGAUUCUUCUGCACUGCGGGUCGCGGCCUGGAGCCGUUCGUAAUGCGAGAGGUGCGGGCGCGGCUGGCGGCCACGCAGGUUGAAUAUAUUUCAGGAAAGGUUUUUUUCACCACCUGUUCUGAUUUGAAUAUGUUGAAGAAAUUAAAAUCUGCAGAAAGAUUAUUUUUGCUGAUUAAAAAGCAGUUUCCACUUAUUAUUUCUUCUGUAAGUAAAGGAAAAAUAUUUAAUGAAAUGCAAAGACUUAUAAAUGAAGAUCCAGGAAGUUGGUUGAAUGCCAUUUCAAUUUGGAAAAAUCUUCUUGAACUUGAUGCAAAAAAGGAAAAACUUUCUCAGAGAGAUGAUAACCAACUAAAAAGAAAAGUGGGAGAAAAUGAAAUCAUUGCAAAGAAAUUAAAAAUAGAACAAAUGCAAAAGAUAGAAGAGAAUAGGGACUGCCAGCUGGAAAAACAAAUAAAAGAAGAAACUCUGGAGCAAAGAGAUUUUACCACUAAAAGCGAAAAGUUUCAAGAAGAAGAAUUUCAGAAUGACAUAGAGAAAGCAAUUGAUACUCAUAAUCAGAAUGЖCUUGACUUUCAGAGUAUCUUGUCGCUGCAGUGGAACUAUUGGAAAGGCCUUCACUGCACAGGAGGUAGGAAAAGUAAUUGGAAUUGCUAUUAUGAAACACUUUGGAUGGAAAGCAGACUUGAGGAAUCCACAAUUAGAGAUCUPUAUACAUCUAAAUGACAUUUACUCUGUGGUGGGGAUUCCUGUGUUCAGGGUUUCCCUAGCCAGCAGAGCUUACAUCAAGACAGCUGGACUGCGAUCUACAAUAGCGUGGGCAAUGGCAUCUCUGGCUGACAUUAAGGUACCAUAUGGCUCUGACUGAAACCUGGCUGUGCACUGAGGACUCUGCUUCCUCUGUAGACAUAUCAAGUGGUGGAUGUCUUUUCUCCCCUAUCUCGAGCACGACUGGGCCUGACAGUGGGGCUGGUGCAUUUGUUUUAGAUCCAAUGUGUGGACUUGGAACAAUACUUUUGGAAGCUGCUAAAGAAUGGCCAGAUGUGUAUUAUGUAGGUGCUGAUGUCAGCGACUCACAGUUACUAGGUACUUGGGACAAUCUGAAAGCUGCAGGCCUUGAGGAUAAAAUUGAAUUACUUAAAAUCUCUGUUAUAGAAUUGCCAUUGCCUUCAGAAAGUGUUGAUAUUAUUAUUUCUGACAUUCCAUUUGGGAAAAAGUUUAAGUUAGGAAAAGACAUCAAAAGCAUUCUACAAGAAAUGGAAAGAGUGCUUCAUGUUGGCGGAACCAUUGUAUUGUUGCUUAGUGAAGAUCACCACAGGCGCCUUACAGAUUGUAAAGAGAGCAACAPCCCUUUCAAUUCCAAGGЖCAGUCACACAGAUGAACCUGGAAUUAAAAAGUGCUUGAAUCCUGAAGAAAAAACUGGUGCAUUCAAGACAGCGUCAACUUCAUUCGAAGCCAGUAACCACAAAUUCUUAGACAGAAUGUCACCAUUUGGCUCCUUGGUACCAGUGGAAUGCUACAAAGUUAGCCUUGGAAAGЖCAGAUGCGUUCAUAUGUAAAUAUAAGAAGUCGCACUCUUCUGGЖCUGUAGCAGGCUUGCUGCCAUCAGCCGGGUUCAGGCCCUUGUAAGUUAGCUGUACAGCAGAAGUUUGCUGUCUCUAGGAUUCAUAUAGCACCCACAGAGCUCCAAGUAACCAAAUUCCCCCAAAGACAGGAGGUGUGGCUGAUGGGUACACAUGCUUGGUAAGAGUUUCUGCUPUAUAUUCUAAAGUACUUAAUGUUUUUGAGAAAAAAGUUAUCGAAUAUUUUUUAGACUUAAGUUUUAUCUUCUGUCAGAAUGUGAAAAGUUCUGCCCAGUUUCUGAGCAAAAACUUCAAUUUCAAAAUAAAGGUUUUCAGGGGUUCACUUAAGUGUAUCACAAUCAACACCAGACGGGAUAUUUUAACUAUCAGAUUUUCGGAAAUGUAAAAACCUPUAUGUGUAЖCUUCUUUUGAUAUUAAЖCUUGAUUUUUGAGCCUGU
Sequence (SHORT NAMES ENCODING)	GAAGGCGCGAGGGCGCGCCUGAGCCGCCAUGUCGGAGGCGCGUGGAGAGCCAGGGUCCGGGCCUGAGGCUGGCGCCCGAUUCUUCUGCACUGCGGGUCGCGGCCUGGAGCCGUUCGUAAUGCGAGAGGUGCGGGCGCGGCUGGCGGCCACGCAGGUUGAAUAUAUUUCAGGAAAGGUUUUUUUCACCACCUGUUCUGAUUUGAAUAUGUUGAAGAAAUUAAAAUCUGCAGAAAGAUUAUUUUUGCUGAUUAAAAAGCAGUUUCCACUUAUUAUUUCUUCUGUAAGUAAAGGAAAAAUAUUUAAUGAAAUGCAAAGACUUAUAAAUGAAGAUCCAGGAAGUUGGUUGAAUGCCAUUUCAAUUUGGAAAAAUCUUCUUGAACUUGAUGCAAAAAAGGAAAAACUUUCUCAGAGAGAUGAUAACCAACUAAAAAGAAAAGUGGGAGAAAAUGAAAUCAUUGCAAAGAAAUUAAAAAUAGAACAAAUGCAAAAGAUAGAAGAGAAUAGGGACUGCCAGCUGGAAAAACAAAUAAAAGAAGAAACUCUGGAGCAAAGAGAUUUUACCACUAAAAGCGAAAAGUUUCAAGAAGAAGAAUUUCAGAAUGACAUAGAGAAAGCAAUUGAUACUCAUAAUCAGAAUGm6ACUUGACUUUCAGAGUAUCUUGUCGCUGCAGUGGAACUAUUGGAAAGGCCUUCACUGCACAGGAGGUAGGAAAAGUAAUUGGAAUUGCUAUUAUGAAACACUUUGGAUGGAAAGCAGACUUGAGGAAUCCACAAUUAGAGAUCUYUAUACAUCUAAAUGACAUUUACUCUGUGGUGGGGAUUCCUGUGUUCAGGGUUUCCCUAGCCAGCAGAGCUUACAUCAAGACAGCUGGACUGCGAUCUACAAUAGCGUGGGCAAUGGCAUCUCUGGCUGACAUUAAGGUACCAUAUGGCUCUGACUGAAACCUGGCUGUGCACUGAGGACUCUGCUUCCUCUGUAGACAUAUCAAGUGGUGGAUGUCUUUUCUCCCCUAUCUCGAGCACGACUGGGCCUGACAGUGGGGCUGGUGCAUUUGUUUUAGAUCCAAUGUGUGGACUUGGAACAAUACUUUUGGAAGCUGCUAAAGAAUGGCCAGAUGUGUAUUAUGUAGGUGCUGAUGUCAGCGACUCACAGUUACUAGGUACUUGGGACAAUCUGAAAGCUGCAGGCCUUGAGGAUAAAAUUGAAUUACUUAAAAUCUCUGUUAUAGAAUUGCCAUUGCCUUCAGAAAGUGUUGAUAUUAUUAUUUCUGACAUUCCAUUUGGGAAAAAGUUUAAGUUAGGAAAAGACAUCAAAAGCAUUCUACAAGAAAUGGAAAGAGUGCUUCAUGUUGGCGGAACCAUUGUAUUGUUGCUUAGUGAAGAUCACCACAGGCGCCUUACAGAUUGUAAAGAGAGCAACAYCCCUUUCAAUUCCAAGGm6ACAGUCACACAGAUGAACCUGGAAUUAAAAAGUGCUUGAAUCCUGAAGAAAAAACUGGUGCAUUCAAGACAGCGUCAACUUCAUUCGAAGCCAGUAACCACAAAUUCUUAGACAGAAUGUCACCAUUUGGCUCCUUGGUACCAGUGGAAUGCUACAAAGUUAGCCUUGGAAAGm6ACAGAUGCGUUCAUAUGUAAAUAUAAGAAGUCGCACUCUUCUGGm6ACUGUAGCAGGCUUGCUGCCAUCAGCCGGGUUCAGGCCCUUGUAAGUUAGCUGUACAGCAGAAGUUUGCUGUCUCUAGGAUUCAUAUAGCACCCACAGAGCUCCAAGUAACCAAAUUCCCCCAAAGACAGGAGGUGUGGCUGAUGGGUACACAUGCUUGGUAAGAGUUUCUGCUYUAUAUUCUAAAGUACUUAAUGUUUUUGAGAAAAAAGUUAUCGAAUAUUUUUUAGACUUAAGUUUUAUCUUCUGUCAGAAUGUGAAAAGUUCUGCCCAGUUUCUGAGCAAAAACUUCAAUUUCAAAAUAAAGGUUUUCAGGGGUUCACUUAAGUGUAUCACAAUCAACACCAGACGGGAUAUUUUAACUAUCAGAUUUUCGGAAAUGUAAAAACCUYUAUGUGUAm6ACUUCUUUUGAUAUUAAm6ACUUGAUUUUUGAGCCUGU
Sequence (MODOMICS CODE ENCODING)	GAAGGCGCGAGGGCGCGCCUGAGCCGCCAUGUCGGAGGCGCGUGGAGAGCCAGGGUCCGGGCCUGAGGCUGGCGCCCGAUUCUUCUGCACUGCGGGUCGCGGCCUGGAGCCGUUCGUAAUGCGAGAGGUGCGGGCGCGGCUGGCGGCCACGCAGGUUGAAUAUAUUUCAGGAAAGGUUUUUUUCACCACCUGUUCUGAUUUGAAUAUGUUGAAGAAAUUAAAAUCUGCAGAAAGAUUAUUUUUGCUGAUUAAAAAGCAGUUUCCACUUAUUAUUUCUUCUGUAAGUAAAGGAAAAAUAUUUAAUGAAAUGCAAAGACUUAUAAAUGAAGAUCCAGGAAGUUGGUUGAAUGCCAUUUCAAUUUGGAAAAAUCUUCUUGAACUUGAUGCAAAAAAGGAAAAACUUUCUCAGAGAGAUGAUAACCAACUAAAAAGAAAAGUGGGAGAAAAUGAAAUCAUUGCAAAGAAAUUAAAAAUAGAACAAAUGCAAAAGAUAGAAGAGAAUAGGGACUGCCAGCUGGAAAAACAAAUAAAAGAAGAAACUCUGGAGCAAAGAGAUUUUACCACUAAAAGCGAAAAGUUUCAAGAAGAAGAAUUUCAGAAUGACAUAGAGAAAGCAAUUGAUACUCAUAAUCAGAAUG2000000006ACUUGACUUUCAGAGUAUCUUGUCGCUGCAGUGGAACUAUUGGAAAGGCCUUCACUGCACAGGAGGUAGGAAAAGUAAUUGGAAUUGCUAUUAUGAAACACUUUGGAUGGAAAGCAGACUUGAGGAAUCCACAAUUAGAGAUCU2000000009UUAUACAUCUAAAUGACAUUUACUCUGUGGUGGGGAUUCCUGUGUUCAGGGUUUCCCUAGCCAGCAGAGCUUACAUCAAGACAGCUGGACUGCGAUCUACAAUAGCGUGGGCAAUGGCAUCUCUGGCUGACAUUAAGGUACCAUAUGGCUCUGACUGAAACCUGGCUGUGCACUGAGGACUCUGCUUCCUCUGUAGACAUAUCAAGUGGUGGAUGUCUUUUCUCCCCUAUCUCGAGCACGACUGGGCCUGACAGUGGGGCUGGUGCAUUUGUUUUAGAUCCAAUGUGUGGACUUGGAACAAUACUUUUGGAAGCUGCUAAAGAAUGGCCAGAUGUGUAUUAUGUAGGUGCUGAUGUCAGCGACUCACAGUUACUAGGUACUUGGGACAAUCUGAAAGCUGCAGGCCUUGAGGAUAAAAUUGAAUUACUUAAAAUCUCUGUUAUAGAAUUGCCAUUGCCUUCAGAAAGUGUUGAUAUUAUUAUUUCUGACAUUCCAUUUGGGAAAAAGUUUAAGUUAGGAAAAGACAUCAAAAGCAUUCUACAAGAAAUGGAAAGAGUGCUUCAUGUUGGCGGAACCAUUGUAUUGUUGCUUAGUGAAGAUCACCACAGGCGCCUUACAGAUUGUAAAGAGAGCAACA2000000009UCCCUUUCAAUUCCAAGG2000000006ACAGUCACACAGAUGAACCUGGAAUUAAAAAGUGCUUGAAUCCUGAAGAAAAAACUGGUGCAUUCAAGACAGCGUCAACUUCAUUCGAAGCCAGUAACCACAAAUUCUUAGACAGAAUGUCACCAUUUGGCUCCUUGGUACCAGUGGAAUGCUACAAAGUUAGCCUUGGAAAG2000000006ACAGAUGCGUUCAUAUGUAAAUAUAAGAAGUCGCACUCUUCUGG2000000006ACUGUAGCAGGCUUGCUGCCAUCAGCCGGGUUCAGGCCCUUGUAAGUUAGCUGUACAGCAGAAGUUUGCUGUCUCUAGGAUUCAUAUAGCACCCACAGAGCUCCAAGUAACCAAAUUCCCCCAAAGACAGGAGGUGUGGCUGAUGGGUACACAUGCUUGGUAAGAGUUUCUGCU2000000009UUAUAUUCUAAAGUACUUAAUGUUUUUGAGAAAAAAGUUAUCGAAUAUUUUUUAGACUUAAGUUUUAUCUUCUGUCAGAAUGUGAAAAGUUCUGCCCAGUUUCUGAGCAAAAACUUCAAUUUCAAAAUAAAGGUUUUCAGGGGUUCACUUAAGUGUAUCACAAUCAACACCAGACGGGAUAUUUUAACUAUCAGAUUUUCGGAAAUGUAAAAACCU2000000009UUAUGUGUA2000000006ACUUCUUUUGAUAUUAA2000000006ACUUGAUUUUUGAGCCUGU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	639	783	1420	1438	1611	1655	1829	2045	2054	2071
Modification Positions	m6A	Y	Y	m6A	m6A	m6A	Y	Y	m6A	m6A
Genomic Coordinates	2:39769771:-	2:39766105:-	2:39736976:-	2:39736958:-	2:39736785:-	2:39736741:-	2:39736567:-	2:39736351:-	2:39736342:-	2:39736325:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 5aTkEfEpX8Xm msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8