Modomics - A Database of RNA Modifications

General Data

RNA Type rRNA
Original Source RIBOMAP_AT18S
Sequence (UNICHARACTER ENCODING) UACCUGGUUGAUCCUGCCAGUAGUCAUʍUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGUAAGUAUGAACGAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAGPUAUAGUUUGUUUGAUGGUAACUACUACUCGGAUAACCGUAGUAAUUCUAGʍGCUAAUACGUGCAACAAACCCCGACUUAUGGAAGGGACGCAUUUAUUAGAUAAAAGGUCGACGCGGGCUCUGGCUUGCUCUGAUGAUUCAUGAUAACUCGACGGAUCGCAUGGCCUCUGUGCUGGCGACGCAUCAUUCAAAUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUAACGGGPGACGGAGAAUUAGGGUUCGAUUCCGGAGA##GAGCCUGAGAAACGGCUACCACAUBCAAGGAAGGCAGCAGGCGCGCʍAAUUACCCAAUCCUGACACGGGGAGGUʍGUGABAAUAAAUAACAAUACCGGGCUCUUUCGAGUCUGGUAAUUGGAAUGAGUACAAUCUAAAUCCCUUAACGAGGʍUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGJAAUUCCAGCUCCAAUA#CGUAUAPUUAA#UUGUUGCAGUUʍAAAAGCUCGUAGPUGAACCUUGGGAUGGGUCGGCCGGUCCGCCUUUGGUGUGCAUUGGUCGGCUUGUCCCUUCGGUCGGCGAUACGCUCCUGGUCUUAAUUGGCCGGGUCGUGCCUCCGGCGCUGUUACUUUGAAGAAAPUAGAGUGCUCAAAGCAAGCCUACGCUCUGGAUACAUUʍGCAUGGGAUAACAUCAUAGGAUUUCGAUCCUAUUGUGUUGGCUUCGGGAUCGGAGUAAUGAUUAACAGGGACAGUCGGGGGCAUUCGUAUUUCAUAGUCAGAGGUGAAAUUCUUGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUUPGCCAAGGAUGUUUUCAUUAAUCAAGAʍCGAAAGUUGGGGGCUCGAAGACGAPCAGAUACCGJBCUAGUCUCAACCAUAAACGAUGCCGACCAGGGAUCAGCGGAUGUUGCUUAUAGGACUCCGCUGGCACCUUAUGAGAAAUCAAAGUUUUUGGGUUCCGGG#GGAGUAPGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUUACCAGGUCCAGACAUAGUAAGGAJUGACAGACUGAGAGCUCUUUCUUGAUUCUAJGGGUGGJ##UGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGUUAACGAʍCGAGACCUCAGCCUGCUAACUAGCUACGUGGAGGCAUCCCUUCACGGCCGGCUJCUUAGAGGGACUAUGGCCGUUUAGGCCAAGGAAGUUUGAGGCAAUAACA#GUCUGUGAUGCCCJUAGAUGUUCUGGGCCGCACGCGCGCUACACUGAUGUAUUCAACGAGUUCACACCUUGCCGACAGGCCCGGGUAAUCUUUGAAAUUUCAUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUCAACGAGGAAUUCCUAGUAAGCGCGAGUCAUCAGCUCGCGUUGACUACGUCCCUGCBCUUUGUACACACCGBCCGUCGCUCCUACCGAUUGAAUGAUCCGGUGAAGUGUUCGGAUCGCGGCGACGUGGGUGGUUCGCCGCCCGCGACGUCGCGAGAAGUCCACUAAACCUUAUCAUUUAGAGGAʍGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUG
Sequence (SHORT NAMES ENCODING) UACCUGGUUGAUCCUGCCAGUAGUCAUpAmUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGUAAGUAUGAACGAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAGpYUAUAGUUUGUUUGAUGGUAACUACUACUCGGAUAACCGUAGUAAUUCUAGpAmGCUAAUACGUGCAACAAACCCCGACUUAUGGAAGGGACGCAUUUAUUAGAUAAAAGGUCGACGCGGGCUCUGGCUUGCUCUGAUGAUUCAUGAUAACUCGACGGAUCGCAUGGCCUCUGUGCUGGCGACGCAUCAUUCAAAUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUAACGGGpYGACGGAGAAUUAGGGUUCGAUUCCGGAGApGmpGmGAGCCUGAGAAACGGCUACCACAUpCmCAAGGAAGGCAGCAGGCGCGCpAmAAUUACCCAAUCCUGACACGGGGAGGUpAmGUGApCmAAUAAAUAACAAUACCGGGCUCUUUCGAGUCUGGUAAUUGGAAUGAGUACAAUCUAAAUCCCUUAACGAGGpAmUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGpUmAAUUCCAGCUCCAAUApGmCGUAUApYUUAApGmUUGUUGCAGUUpAmAAAAGCUCGUAGpYUGAACCUUGGGAUGGGUCGGCCGGUCCGCCUUUGGUGUGCAUUGGUCGGCUUGUCCCUUCGGUCGGCGAUACGCUCCUGGUCUUAAUUGGCCGGGUCGUGCCUCCGGCGCUGUUACUUUGAAGAAApYUAGAGUGCUCAAAGCAAGCCUACGCUCUGGAUACAUUpAmGCAUGGGAUAACAUCAUAGGAUUUCGAUCCUAUUGUGUUGGCUUCGGGAUCGGAGUAAUGAUUAACAGGGACAGUCGGGGGCAUUCGUAUUUCAUAGUCAGAGGUGAAAUUCUUGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUUpYGCCAAGGAUGUUUUCAUUAAUCAAGApAmCGAAAGUUGGGGGCUCGAAGACGApYCAGAUACCGpUmpCmCUAGUCUCAACCAUAAACGAUGCCGACCAGGGAUCAGCGGAUGUUGCUUAUAGGACUCCGCUGGCACCUUAUGAGAAAUCAAAGUUUUUGGGUUCCGGGpGmGGAGUApYGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUUACCAGGUCCAGACAUAGUAAGGApUmUGACAGACUGAGAGCUCUUUCUUGAUUCUApUmGGGUGGpUmpGmpGmUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGUUAACGApAmCGAGACCUCAGCCUGCUAACUAGCUACGUGGAGGCAUCCCUUCACGGCCGGCUpUmCUUAGAGGGACUAUGGCCGUUUAGGCCAAGGAAGUUUGAGGCAAUAACApGmGUCUGUGAUGCCCpUmUAGAUGUUCUGGGCCGCACGCGCGCUACACUGAUGUAUUCAACGAGUUCACACCUUGCCGACAGGCCCGGGUAAUCUUUGAAAUUUCAUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUCAACGAGGAAUUCCUAGUAAGCGCGAGUCAUCAGCUCGCGUUGACUACGUCCCUGCpCmCUUUGUACACACCGpCmCCGUCGCUCCUACCGAUUGAAUGAUCCGGUGAAGUGUUCGGAUCGCGGCGACGUGGGUGGUUCGCCGCCCGCGACGUCGCGAGAAGUCCACUAAACCUUAUCAUUUAGAGGApAmGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUG
Sequence (MODOMICS CODE ENCODING) UACCUGGUUGAUCCUGCCAGUAGUCAU2000090551AUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUGUAAGUAUGAACGAAUUCAGACUGUGAAACUGCGAAUGGCUCAUUAAAUCAG2000009551UUAUAGUUUGUUUGAUGGUAACUACUACUCGGAUAACCGUAGUAAUUCUAG2000090551AGCUAAUACGUGCAACAAACCCCGACUUAUGGAAGGGACGCAUUUAUUAGAUAAAAGGUCGACGCGGGCUCUGGCUUGCUCUGAUGAUUCAUGAUAACUCGACGGAUCGCAUGGCCUCUGUGCUGGCGACGCAUCAUUCAAAUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUGGUAACGGG2000009551UGACGGAGAAUUAGGGUUCGAUUCCGGAGA2000090551G2000090551GGAGCCUGAGAAACGGCUACCACAU2000090551CCAAGGAAGGCAGCAGGCGCGC2000090551AAAUUACCCAAUCCUGACACGGGGAGGU2000090551AGUGA2000090551CAAUAAAUAACAAUACCGGGCUCUUUCGAGUCUGGUAAUUGGAAUGAGUACAAUCUAAAUCCCUUAACGAGG2000090551AUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGG2000090551UAAUUCCAGCUCCAAUA2000090551GCGUAUA2000009551UUUAA2000090551GUUGUUGCAGUU2000090551AAAAAGCUCGUAG2000009551UUGAACCUUGGGAUGGGUCGGCCGGUCCGCCUUUGGUGUGCAUUGGUCGGCUUGUCCCUUCGGUCGGCGAUACGCUCCUGGUCUUAAUUGGCCGGGUCGUGCCUCCGGCGCUGUUACUUUGAAGAAA2000009551UUAGAGUGCUCAAAGCAAGCCUACGCUCUGGAUACAUU2000090551AGCAUGGGAUAACAUCAUAGGAUUUCGAUCCUAUUGUGUUGGCUUCGGGAUCGGAGUAAUGAUUAACAGGGACAGUCGGGGGCAUUCGUAUUUCAUAGUCAGAGGUGAAAUUCUUGGAUUUAUGAAAGACGAACAACUGCGAAAGCAUU2000009551UGCCAAGGAUGUUUUCAUUAAUCAAGA2000090551ACGAAAGUUGGGGGCUCGAAGACGA2000009551UCAGAUACCG2000090551U2000090551CCUAGUCUCAACCAUAAACGAUGCCGACCAGGGAUCAGCGGAUGUUGCUUAUAGGACUCCGCUGGCACCUUAUGAGAAAUCAAAGUUUUUGGGUUCCGGG2000090551GGGAGUA2000009551UGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUUACCAGGUCCAGACAUAGUAAGGA2000090551UUGACAGACUGAGAGCUCUUUCUUGAUUCUA2000090551UGGGUGG2000090551U2000090551G2000090551GUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGUUAACGA2000090551ACGAGACCUCAGCCUGCUAACUAGCUACGUGGAGGCAUCCCUUCACGGCCGGCU2000090551UCUUAGAGGGACUAUGGCCGUUUAGGCCAAGGAAGUUUGAGGCAAUAACA2000090551GGUCUGUGAUGCCC2000090551UUAGAUGUUCUGGGCCGCACGCGCGCUACACUGAUGUAUUCAACGAGUUCACACCUUGCCGACAGGCCCGGGUAAUCUUUGAAAUUUCAUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUCAACGAGGAAUUCCUAGUAAGCGCGAGUCAUCAGCUCGCGUUGACUACGUCCCUGC2000090551CCUUUGUACACACCG2000090551CCCGUCGCUCCUACCGAUUGAAUGAUCCGGUGAAGUGUUCGGAUCGCGGCGACGUGGGUGGUUCGCCGCCCGCGACGUCGCGAGAAGUCCACUAAACCUUAUCAUUUAGAGGA2000090551AGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the sequence 27 110 161 359 389 390 415 437 465 470 542 579 596 603 608 620 633 760 798 947 974 999 1009 1010 1110 1117 1231 1262 1269 1270 1271 1326 1380 1430 1444 1625 1640 1753
Modification positions pAm pY pAm pY pGm pGm pCm pAm pAm pCm pAm pUm pGm pY pGm pAm pY pY pAm pY pAm pY pUm pCm pGm pY pUm pUm pUm pGm pGm pAm pUm pGm pUm pCm pCm pAm
Level of Experimental Evidence 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Level of Experimental Reliability 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5
Source MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS MODOMICS