General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000644193
Gene ID:	ENSG00000115355
Gene Name:	CCDC88A
Sequence (UNICHARACTER ENCODING)	GCCGAGGUCGAGUCUGGUGGCGCCUCGGUAUCCUUAACGUGGUCUCUGUUUAACGUAUUUCAUUUAGCCCCCGUUGGGAUUGAUUCAUUGGGAGCAGUUUCGCUGGUCUGGAUCCUCCAGGAGCUGGACAACCUUGACGGGCUUUUUGUCUUGGGUUCCAGCCCCCUUUCCCUUCCUCCUCCUCCAGAUGCCUUUUCUCUGCCCCUCCUCGCCCGGUACAGЖCAUUUCCAGCGCAGGCUGCUGCUCGUGGUGUCCGUCGUCGAAGCCACUUCUUGGGAUUUCGGCUCGUUUCACUCUGGGGUGUUUUUUGAGGAGGGAGAGUGCCCCCCUCCUCCACGAUGGGAUUUUUCUCCCUUGCCGAAAUGGЖCUUUCAUUGAUUUCUACUUACUUCCACGUUUAGUGЖCCAAUUCCCUAGGCGUAUUUUUGUGGUAGUUCCUUUUUUCAAAUACAUACUCUGUAAAAUGGAGAACGAAAUUUUUACUCCCCUUCUGGAGCAGUUCAUGACCAGCCCUUUGGUCACUUGGGUUAAAACGUUUGGACCUCUGGCCGCAGGAAAUGGGACCAACCUUGAUGAAUAUGUGGCUUUGGUGGAUGGGGUAUUCUUGAACCAGGUCAUGCUCCAAAUUAAUCCUAAAUUGGAGAGUCAGAGAGUAAAUAAAAAAGUCAAUAAUGAUGCCUCACUUAGAAUGCACAAUCUAUCCAUUUUGGUGAGACAGAUAAAAUUUUAUUACCAGGAGACUUUGCAGCAAUUGAUCAUGAUGUCGUUGCCAAAUGUCUUAAUCAUUGGCAAAAAUCCCUUUUCUGGGAGGAAAAGACUGAGCAGUUGUUGGAUUGUAAACAAGAACUUGAGCAAAUGGAAAUAGAACUCAAAAGGCUGCAACAAGAGAACAUGAAUUUGCUUUCGGAUGCUCGCUCUGCCAGAAUGUACCGAGAUGAAUUAGAUGCACUUCGAGAGAAAGCAGUCAGAGUCGAUAAGCUUGAAAGUGAAGUCAGCAGAUAUAAAGAGAGACUACAUGAUAUUGAAUUUUAUAAGGCAAGAGUUGAGGAAUUAAAAGAAGACAAUCAAGUUUUAUUAGAAACAAAAACCAUGUUGGAAGACCAACUAGAGGGAACUCGUGCUCGUUCUGAUAAAUUACAUGAAUUAGAAAAAGAGAACUUACAACUGAAAGCUAAACUUCAUGAUAUGGAAAUGGAACGAGAUAUGGAUAGAAAAAAGAUUGAAGAAUUAAUGGAAGAAAAUAUGACUUUGGAAAUGGCACAGAAACAAAGUAUGGAUGAAUCAUUACAUCUUGGCUGGGAACUGGAACAGAUAUCCAGAACUAGUGAACUUUCCGAAGCACCCCAGAAAUCCCUGGGCCAUGAGGUGAAUGAGUUGACAUCAAGUAGAUUAUUGAAGCUAGAGAUGGAAAAUCAAAGUUUGACAAAAACCGUAGAAGAGCUUCGGACUACUGUGGAUUCUGUAGAAGGCAAUGCUUCCAAAAUCCUGAAAAUGGAAAAAGAAAAUCAAAGGCUCAGUAAAAAGGUUGAGAUUCUUGAAAAUGAGAUUGUUCAAGAAAAGCAAAGUCUUCAGAAUUGUCAGAAUUUAAGCAAGGAUCUAAUGAAGGAGAAAGCUCAGCUUGAAAAAACAAUAGAAACACUGAGAGAAAAUUCAGAGAGACAGAUUAAGAUACUGGAACAGGAAAAUGAACAUCUGAAUCAAACAGUGUCUUCCUUAAGGCAGCGGUCCCAGAUA
Sequence (SHORT NAMES ENCODING)	GCCGAGGUCGAGUCUGGUGGCGCCUCGGUAUCCUUAACGUGGUCUCUGUUUAACGUAUUUCAUUUAGCCCCCGUUGGGAUUGAUUCAUUGGGAGCAGUUUCGCUGGUCUGGAUCCUCCAGGAGCUGGACAACCUUGACGGGCUUUUUGUCUUGGGUUCCAGCCCCCUUUCCCUUCCUCCUCCUCCAGAUGCCUUUUCUCUGCCCCUCCUCGCCCGGUACAGm6ACAUUUCCAGCGCAGGCUGCUGCUCGUGGUGUCCGUCGUCGAAGCCACUUCUUGGGAUUUCGGCUCGUUUCACUCUGGGGUGUUUUUUGAGGAGGGAGAGUGCCCCCCUCCUCCACGAUGGGAUUUUUCUCCCUUGCCGAAAUGGm6ACUUUCAUUGAUUUCUACUUACUUCCACGUUUAGUGm6ACCAAUUCCCUAGGCGUAUUUUUGUGGUAGUUCCUUUUUUCAAAUACAUACUCUGUAAAAUGGAGAACGAAAUUUUUACUCCCCUUCUGGAGCAGUUCAUGACCAGCCCUUUGGUCACUUGGGUUAAAACGUUUGGACCUCUGGCCGCAGGAAAUGGGACCAACCUUGAUGAAUAUGUGGCUUUGGUGGAUGGGGUAUUCUUGAACCAGGUCAUGCUCCAAAUUAAUCCUAAAUUGGAGAGUCAGAGAGUAAAUAAAAAAGUCAAUAAUGAUGCCUCACUUAGAAUGCACAAUCUAUCCAUUUUGGUGAGACAGAUAAAAUUUUAUUACCAGGAGACUUUGCAGCAAUUGAUCAUGAUGUCGUUGCCAAAUGUCUUAAUCAUUGGCAAAAAUCCCUUUUCUGGGAGGAAAAGACUGAGCAGUUGUUGGAUUGUAAACAAGAACUUGAGCAAAUGGAAAUAGAACUCAAAAGGCUGCAACAAGAGAACAUGAAUUUGCUUUCGGAUGCUCGCUCUGCCAGAAUGUACCGAGAUGAAUUAGAUGCACUUCGAGAGAAAGCAGUCAGAGUCGAUAAGCUUGAAAGUGAAGUCAGCAGAUAUAAAGAGAGACUACAUGAUAUUGAAUUUUAUAAGGCAAGAGUUGAGGAAUUAAAAGAAGACAAUCAAGUUUUAUUAGAAACAAAAACCAUGUUGGAAGACCAACUAGAGGGAACUCGUGCUCGUUCUGAUAAAUUACAUGAAUUAGAAAAAGAGAACUUACAACUGAAAGCUAAACUUCAUGAUAUGGAAAUGGAACGAGAUAUGGAUAGAAAAAAGAUUGAAGAAUUAAUGGAAGAAAAUAUGACUUUGGAAAUGGCACAGAAACAAAGUAUGGAUGAAUCAUUACAUCUUGGCUGGGAACUGGAACAGAUAUCCAGAACUAGUGAACUUUCCGAAGCACCCCAGAAAUCCCUGGGCCAUGAGGUGAAUGAGUUGACAUCAAGUAGAUUAUUGAAGCUAGAGAUGGAAAAUCAAAGUUUGACAAAAACCGUAGAAGAGCUUCGGACUACUGUGGAUUCUGUAGAAGGCAAUGCUUCCAAAAUCCUGAAAAUGGAAAAAGAAAAUCAAAGGCUCAGUAAAAAGGUUGAGAUUCUUGAAAAUGAGAUUGUUCAAGAAAAGCAAAGUCUUCAGAAUUGUCAGAAUUUAAGCAAGGAUCUAAUGAAGGAGAAAGCUCAGCUUGAAAAAACAAUAGAAACACUGAGAGAAAAUUCAGAGAGACAGAUUAAGAUACUGGAACAGGAAAAUGAACAUCUGAAUCAAACAGUGUCUUCCUUAAGGCAGCGGUCCCAGAUA
Sequence (MODOMICS CODE ENCODING)	GCCGAGGUCGAGUCUGGUGGCGCCUCGGUAUCCUUAACGUGGUCUCUGUUUAACGUAUUUCAUUUAGCCCCCGUUGGGAUUGAUUCAUUGGGAGCAGUUUCGCUGGUCUGGAUCCUCCAGGAGCUGGACAACCUUGACGGGCUUUUUGUCUUGGGUUCCAGCCCCCUUUCCCUUCCUCCUCCUCCAGAUGCCUUUUCUCUGCCCCUCCUCGCCCGGUACAG2000000006ACAUUUCCAGCGCAGGCUGCUGCUCGUGGUGUCCGUCGUCGAAGCCACUUCUUGGGAUUUCGGCUCGUUUCACUCUGGGGUGUUUUUUGAGGAGGGAGAGUGCCCCCCUCCUCCACGAUGGGAUUUUUCUCCCUUGCCGAAAUGG2000000006ACUUUCAUUGAUUUCUACUUACUUCCACGUUUAGUG2000000006ACCAAUUCCCUAGGCGUAUUUUUGUGGUAGUUCCUUUUUUCAAAUACAUACUCUGUAAAAUGGAGAACGAAAUUUUUACUCCCCUUCUGGAGCAGUUCAUGACCAGCCCUUUGGUCACUUGGGUUAAAACGUUUGGACCUCUGGCCGCAGGAAAUGGGACCAACCUUGAUGAAUAUGUGGCUUUGGUGGAUGGGGUAUUCUUGAACCAGGUCAUGCUCCAAAUUAAUCCUAAAUUGGAGAGUCAGAGAGUAAAUAAAAAAGUCAAUAAUGAUGCCUCACUUAGAAUGCACAAUCUAUCCAUUUUGGUGAGACAGAUAAAAUUUUAUUACCAGGAGACUUUGCAGCAAUUGAUCAUGAUGUCGUUGCCAAAUGUCUUAAUCAUUGGCAAAAAUCCCUUUUCUGGGAGGAAAAGACUGAGCAGUUGUUGGAUUGUAAACAAGAACUUGAGCAAAUGGAAAUAGAACUCAAAAGGCUGCAACAAGAGAACAUGAAUUUGCUUUCGGAUGCUCGCUCUGCCAGAAUGUACCGAGAUGAAUUAGAUGCACUUCGAGAGAAAGCAGUCAGAGUCGAUAAGCUUGAAAGUGAAGUCAGCAGAUAUAAAGAGAGACUACAUGAUAUUGAAUUUUAUAAGGCAAGAGUUGAGGAAUUAAAAGAAGACAAUCAAGUUUUAUUAGAAACAAAAACCAUGUUGGAAGACCAACUAGAGGGAACUCGUGCUCGUUCUGAUAAAUUACAUGAAUUAGAAAAAGAGAACUUACAACUGAAAGCUAAACUUCAUGAUAUGGAAAUGGAACGAGAUAUGGAUAGAAAAAAGAUUGAAGAAUUAAUGGAAGAAAAUAUGACUUUGGAAAUGGCACAGAAACAAAGUAUGGAUGAAUCAUUACAUCUUGGCUGGGAACUGGAACAGAUAUCCAGAACUAGUGAACUUUCCGAAGCACCCCAGAAAUCCCUGGGCCAUGAGGUGAAUGAGUUGACAUCAAGUAGAUUAUUGAAGCUAGAGAUGGAAAAUCAAAGUUUGACAAAAACCGUAGAAGAGCUUCGGACUACUGUGGAUUCUGUAGAAGGCAAUGCUUCCAAAAUCCUGAAAAUGGAAAAAGAAAAUCAAAGGCUCAGUAAAAAGGUUGAGAUUCUUGAAAAUGAGAUUGUUCAAGAAAAGCAAAGUCUUCAGAAUUGUCAGAAUUUAAGCAAGGAUCUAAUGAAGGAGAAAGCUCAGCUUGAAAAAACAAUAGAAACACUGAGAGAAAAUUCAGAGAGACAGAUUAAGAUACUGGAACAGGAAAAUGAACAUCUGAAUCAAACAGUGUCUUCCUUAAGGCAGCGGUCCCAGAUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	222	367	403
Modification Positions	m6A	m6A	m6A
Genomic Coordinates	2:55419319:-	2:55419174:-	2:55419138:-
Level of Experimental Evidence	3	3	3
Level of Experimental Reliability	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC Lny8GcCeVGc9 PF5iqBNSbHaa	5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC